Wall clock time and date at job start Mon Mar 30 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86796 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47436 * 299.99946 * 3 2 1 6 6 H 1.48508 * 109.47046 * 59.99797 * 3 2 1 7 7 C 1.38797 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00213 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.81006 * 100.00033 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99992 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99689 * 180.02562 * 11 10 9 14 14 C 1.44447 * 116.51728 * 358.49577 * 13 11 10 15 15 C 1.51551 * 113.07084 * 188.66570 * 14 13 11 16 16 C 1.52889 * 111.75434 * 320.33367 * 15 14 13 17 17 H 1.08998 * 113.21907 * 293.52773 * 16 15 14 18 18 C 1.54900 * 106.76640 * 169.26513 * 16 15 14 19 19 O 1.43600 * 106.76736 * 271.10696 * 18 16 15 20 20 C 1.44172 * 109.79093 * 358.96640 * 19 18 16 21 21 C 1.54103 * 104.09676 * 335.48535 * 20 19 18 22 22 H 1.09004 * 109.18244 * 284.86653 * 21 20 19 23 23 C 1.43966 * 116.46564 * 180.02562 * 13 11 10 24 24 H 0.97002 * 119.99754 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46804 * 60.00042 * 10 9 7 26 26 H 1.08997 * 109.47034 * 300.00317 * 10 9 7 27 27 H 1.09000 * 108.16662 * 68.12474 * 14 13 11 28 28 H 1.08999 * 109.19515 * 309.92671 * 14 13 11 29 29 H 1.09006 * 109.02609 * 199.75379 * 15 14 13 30 30 H 1.08992 * 109.02843 * 80.92137 * 15 14 13 31 31 H 1.09004 * 110.54703 * 151.58078 * 18 16 15 32 32 H 1.08995 * 109.58539 * 30.10834 * 18 16 15 33 33 H 1.09000 * 110.50414 * 216.82719 * 20 19 18 34 34 H 1.09007 * 110.62292 * 94.19360 * 20 19 18 35 35 H 1.09000 * 108.06030 * 61.26869 * 23 13 11 36 36 H 1.09005 * 108.05588 * 304.77832 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5022 -0.0010 13 7 2.8441 -6.3431 0.0003 14 6 4.2515 -6.0196 -0.0326 15 6 5.1352 -7.2332 -0.2400 16 6 4.6276 -8.4442 0.5432 17 1 4.6938 -8.3158 1.6236 18 6 5.4329 -9.6693 0.0430 19 8 4.7129 -10.2097 -1.0757 20 6 3.5141 -9.4414 -1.3018 21 6 3.2073 -8.8118 0.0708 22 1 2.7964 -9.5754 0.7314 23 6 2.2571 -7.6577 -0.0009 24 1 -0.4850 0.8401 -0.0004 25 1 3.1245 -3.7313 0.8906 26 1 3.1245 -3.7313 -0.8894 27 1 4.5149 -5.5516 0.9160 28 1 4.4371 -5.3086 -0.8376 29 1 6.1472 -6.9963 0.0888 30 1 5.1566 -7.4800 -1.3014 31 1 5.5153 -10.4199 0.8292 32 1 6.4256 -9.3494 -0.2738 33 1 2.6972 -10.0916 -1.6149 34 1 3.6902 -8.6655 -2.0470 35 1 1.6655 -7.7627 -0.9103 36 1 1.5787 -7.7256 0.8496 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598391662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:31 Heat of formation + Delta-G solvation = -79.236126 kcal Electronic energy + Delta-G solvation = -18806.789346 eV Core-core repulsion = 15803.113455 eV Total energy + Delta-G solvation = -3003.675891 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08378 -39.19212 -36.23172 -33.01129 -32.59130 -32.43630 -29.25279 -28.75950 -25.66050 -25.15843 -23.65119 -22.46552 -20.39146 -18.74732 -17.83307 -16.76357 -16.57474 -16.39215 -15.97928 -15.52758 -14.86057 -14.81471 -14.28815 -13.97001 -13.72784 -13.40349 -13.36194 -12.81460 -12.74420 -12.57326 -12.09366 -11.86546 -11.25591 -11.13170 -11.07666 -11.03418 -10.90926 -10.85274 -10.76374 -9.83662 -9.80424 -9.40748 -9.08398 -8.46003 -8.23611 -6.51578 -6.22899 -3.93598 2.91121 3.00830 3.20622 3.25137 3.30180 3.49790 3.58320 3.97019 4.19056 4.26578 4.41667 4.59220 4.70653 4.85464 4.95087 4.99923 5.12267 5.16995 5.22587 5.29382 5.38399 5.47067 5.53770 5.56104 5.58439 5.64559 5.70420 5.86339 5.89567 5.98316 6.11826 6.60009 6.81104 7.42661 7.58735 8.34194 8.51679 9.22556 10.84593 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.043710 B = 0.003841 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.433515 B = 7287.246398 C = 7747.659719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.063 6.063 10 C -0.150 4.150 11 C 0.524 3.476 12 O -0.513 6.513 13 N -0.608 5.608 14 C 0.116 3.884 15 C -0.124 4.124 16 C -0.115 4.115 17 H 0.103 0.897 18 C 0.053 3.947 19 O -0.386 6.386 20 C 0.056 3.944 21 C -0.125 4.125 22 H 0.094 0.906 23 C 0.137 3.863 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 -17.384 0.448 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.164 5.836 10 C -0.301 4.301 11 C 0.311 3.689 12 O -0.387 6.387 13 N -0.344 5.344 14 C -0.008 4.008 15 C -0.162 4.162 16 C -0.134 4.134 17 H 0.121 0.879 18 C -0.024 4.024 19 O -0.306 6.306 20 C -0.020 4.020 21 C -0.144 4.144 22 H 0.112 0.888 23 C 0.014 3.986 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.191 -17.807 0.330 20.520 hybrid contribution 1.984 1.471 0.141 2.474 sum 12.174 -16.336 0.471 20.379 Atomic orbital electron populations 1.70032 1.05957 1.27347 1.46922 1.24993 0.95024 0.99034 0.94529 0.86118 0.79579 0.81883 0.77916 1.19613 1.20555 1.20562 1.22895 0.94912 0.91593 1.58869 0.90886 1.85408 1.05083 0.96437 1.96702 1.23585 1.06433 0.95285 1.04751 1.20419 0.86336 0.86467 0.75641 1.90697 1.15254 1.85475 1.47278 1.46677 1.06339 1.05611 1.75811 1.20762 0.80348 0.97220 1.02457 1.21562 0.99480 0.93939 1.01224 1.22512 0.94197 0.95441 1.01237 0.87926 1.23418 0.95518 0.94475 0.88943 1.88557 1.36598 1.54993 1.50408 1.23473 0.87378 0.95127 0.96034 1.22033 0.95913 0.98128 0.98338 0.88789 1.19663 0.94436 0.81286 1.03199 0.92232 0.89191 0.89215 0.91814 0.90781 0.89838 0.90943 0.91197 0.90996 0.89256 0.91621 0.91772 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.02 4.79 36.01 0.17 -2.85 16 11 C 0.52 9.87 7.55 -10.98 -0.08 9.79 16 12 O -0.51 -11.64 15.50 5.56 0.09 -11.55 16 13 N -0.61 -8.49 3.20 -180.17 -0.58 -9.07 16 14 C 0.12 1.25 5.25 -5.87 -0.03 1.22 16 15 C -0.12 -1.02 4.77 -27.52 -0.13 -1.15 16 16 C -0.12 -0.92 3.66 -89.08 -0.33 -1.25 16 17 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 18 C 0.05 0.42 7.17 38.16 0.27 0.69 16 19 O -0.39 -4.01 11.40 -35.23 -0.40 -4.41 16 20 C 0.06 0.52 6.54 37.73 0.25 0.77 16 21 C -0.13 -1.14 2.90 -91.10 -0.26 -1.41 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 23 C 0.14 1.68 5.14 -7.04 -0.04 1.64 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.09 1.67 7.82 -51.92 -0.41 1.27 16 26 H 0.09 1.67 7.31 -51.92 -0.38 1.29 16 27 H 0.06 0.67 7.86 -51.93 -0.41 0.26 16 28 H 0.07 0.81 6.99 -51.93 -0.36 0.44 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.63 6.60 -51.93 -0.34 0.28 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.50 7.76 -51.93 -0.40 0.09 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.63 7.15 -51.92 -0.37 0.26 16 35 H 0.06 0.83 7.78 -51.93 -0.40 0.43 16 36 H 0.07 0.92 7.96 -51.93 -0.41 0.51 16 LS Contribution 301.60 15.07 4.54 4.54 Total: -1.00 -33.89 301.60 -7.98 -41.87 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.15 Total: -2.98 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 0.02 Total: -5.39 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.16 Total: -34.40 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.32 Total: -15.97 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.89 -7.98 -41.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598391662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.364 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds