Wall clock time and date at job start Mon Mar 30 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86796 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47436 * 299.99946 * 3 2 1 6 6 H 1.48508 * 109.47046 * 59.99797 * 3 2 1 7 7 C 1.38797 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00213 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.81006 * 100.00033 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99992 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99689 * 180.02562 * 11 10 9 14 14 C 1.44447 * 116.51728 * 358.49577 * 13 11 10 15 15 C 1.51551 * 113.07084 * 188.66570 * 14 13 11 16 16 C 1.52889 * 111.75434 * 320.33367 * 15 14 13 17 17 H 1.08998 * 113.21907 * 293.52773 * 16 15 14 18 18 C 1.54900 * 106.76640 * 169.26513 * 16 15 14 19 19 O 1.43600 * 106.76736 * 271.10696 * 18 16 15 20 20 C 1.44172 * 109.79093 * 358.96640 * 19 18 16 21 21 C 1.54103 * 104.09676 * 335.48535 * 20 19 18 22 22 H 1.09004 * 109.18244 * 284.86653 * 21 20 19 23 23 C 1.43966 * 116.46564 * 180.02562 * 13 11 10 24 24 H 0.97002 * 119.99754 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46804 * 60.00042 * 10 9 7 26 26 H 1.08997 * 109.47034 * 300.00317 * 10 9 7 27 27 H 1.09000 * 108.16662 * 68.12474 * 14 13 11 28 28 H 1.08999 * 109.19515 * 309.92671 * 14 13 11 29 29 H 1.09006 * 109.02609 * 199.75379 * 15 14 13 30 30 H 1.08992 * 109.02843 * 80.92137 * 15 14 13 31 31 H 1.09004 * 110.54703 * 151.58078 * 18 16 15 32 32 H 1.08995 * 109.58539 * 30.10834 * 18 16 15 33 33 H 1.09000 * 110.50414 * 216.82719 * 20 19 18 34 34 H 1.09007 * 110.62292 * 94.19360 * 20 19 18 35 35 H 1.09000 * 108.06030 * 61.26869 * 23 13 11 36 36 H 1.09005 * 108.05588 * 304.77832 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7911 -5.5022 -0.0010 13 7 2.8441 -6.3431 0.0003 14 6 4.2515 -6.0196 -0.0326 15 6 5.1352 -7.2332 -0.2400 16 6 4.6276 -8.4442 0.5432 17 1 4.6938 -8.3158 1.6236 18 6 5.4329 -9.6693 0.0430 19 8 4.7129 -10.2097 -1.0757 20 6 3.5141 -9.4414 -1.3018 21 6 3.2073 -8.8118 0.0708 22 1 2.7964 -9.5754 0.7314 23 6 2.2571 -7.6577 -0.0009 24 1 -0.4850 0.8401 -0.0004 25 1 3.1245 -3.7313 0.8906 26 1 3.1245 -3.7313 -0.8894 27 1 4.5149 -5.5516 0.9160 28 1 4.4371 -5.3086 -0.8376 29 1 6.1472 -6.9963 0.0888 30 1 5.1566 -7.4800 -1.3014 31 1 5.5153 -10.4199 0.8292 32 1 6.4256 -9.3494 -0.2738 33 1 2.6972 -10.0916 -1.6149 34 1 3.6902 -8.6655 -2.0470 35 1 1.6655 -7.7627 -0.9103 36 1 1.5787 -7.7256 0.8496 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598391662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:30 Heat of formation + Delta-G solvation = -102.759093 kcal Electronic energy + Delta-G solvation = -18807.809379 eV Core-core repulsion = 15803.113455 eV Total energy + Delta-G solvation = -3004.695923 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02463 -40.36202 -37.37472 -34.58579 -34.00638 -33.44203 -30.71970 -29.50107 -27.71249 -26.28783 -24.50200 -23.14253 -21.64871 -19.82001 -19.49916 -18.16659 -17.51041 -17.42093 -17.07830 -16.88163 -16.39188 -15.98529 -15.68230 -15.14774 -14.83615 -14.57883 -14.51396 -14.17739 -13.76351 -13.59676 -13.34867 -13.15068 -12.93472 -12.87058 -12.57523 -12.08187 -11.80624 -11.70774 -11.65350 -11.59243 -11.15596 -10.94240 -10.50475 -10.26554 -9.64501 -8.68003 -8.34725 -6.13271 1.25573 1.41966 1.46213 1.51248 1.57711 2.07933 2.27247 2.82222 2.99741 3.22116 3.28455 3.56411 3.67517 3.71928 3.85263 4.01971 4.20764 4.22013 4.28809 4.34270 4.44410 4.54699 4.57819 4.66676 4.74865 4.77863 4.88951 4.91250 4.97767 5.04175 5.26494 5.42216 5.67285 5.94192 6.16944 6.20500 7.06707 7.09902 8.74818 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.043710 B = 0.003841 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.433515 B = 7287.246398 C = 7747.659719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.123 4.123 11 C 0.521 3.479 12 O -0.562 6.562 13 N -0.590 5.590 14 C 0.103 3.897 15 C -0.118 4.118 16 C -0.111 4.111 17 H 0.116 0.884 18 C 0.052 3.948 19 O -0.405 6.405 20 C 0.058 3.942 21 C -0.120 4.120 22 H 0.107 0.893 23 C 0.138 3.862 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.095 -17.771 0.818 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.274 4.274 11 C 0.308 3.692 12 O -0.440 6.440 13 N -0.324 5.324 14 C -0.019 4.019 15 C -0.156 4.156 16 C -0.130 4.130 17 H 0.134 0.866 18 C -0.024 4.024 19 O -0.325 6.325 20 C -0.019 4.019 21 C -0.139 4.139 22 H 0.125 0.875 23 C 0.015 3.985 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.311 -18.234 0.700 22.587 hybrid contribution 1.081 1.462 0.023 1.818 sum 14.392 -16.772 0.723 22.112 Atomic orbital electron populations 1.70196 1.08016 1.28546 1.48074 1.26133 0.95952 1.03331 0.93709 0.84897 0.78668 0.76275 0.78049 1.17890 1.19985 1.19962 1.23223 0.95349 0.91836 1.58792 0.89812 1.85605 1.10728 0.99410 1.97035 1.23401 1.03350 0.94113 1.06498 1.20266 0.86119 0.86984 0.75795 1.90680 1.17309 1.86017 1.50030 1.46668 1.07227 1.05098 1.73390 1.21099 0.78591 0.98993 1.03222 1.21569 1.00106 0.92665 1.01231 1.22551 0.93007 0.95509 1.01949 0.86635 1.23552 0.95651 0.94558 0.88628 1.88544 1.36932 1.55540 1.51461 1.23449 0.87504 0.95096 0.95813 1.21964 0.96251 0.96822 0.98885 0.87490 1.19728 0.95195 0.81366 1.02176 0.92007 0.87249 0.87337 0.90647 0.90504 0.87054 0.91314 0.89907 0.89714 0.88632 0.92258 0.92852 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.88 9.50 67.95 0.65 -30.24 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.12 -4.87 4.79 71.24 0.34 -4.53 16 11 C 0.52 19.66 7.55 87.66 0.66 20.32 16 12 O -0.56 -26.39 15.50 -3.01 -0.05 -26.44 16 13 N -0.59 -15.81 3.20 -842.31 -2.69 -18.50 16 14 C 0.10 1.96 5.25 86.29 0.45 2.41 16 15 C -0.12 -1.54 4.77 30.08 0.14 -1.40 16 16 C -0.11 -1.42 3.66 -9.80 -0.04 -1.46 16 17 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 18 C 0.05 0.64 7.17 72.63 0.52 1.17 16 19 O -0.40 -7.47 11.40 -148.98 -1.70 -9.17 16 20 C 0.06 0.97 6.54 72.36 0.47 1.45 16 21 C -0.12 -1.96 2.90 -11.11 -0.03 -2.00 16 22 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 23 C 0.14 3.29 5.14 85.78 0.44 3.73 16 24 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.11 3.90 7.82 -2.39 -0.02 3.88 16 26 H 0.11 3.89 7.31 -2.40 -0.02 3.87 16 27 H 0.08 1.32 7.86 -2.39 -0.02 1.30 16 28 H 0.08 1.46 6.99 -2.39 -0.02 1.45 16 29 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 0.99 6.60 -2.39 -0.02 0.97 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.08 0.85 7.76 -2.39 -0.02 0.83 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.07 7.15 -2.38 -0.02 1.05 16 35 H 0.05 1.40 7.78 -2.39 -0.02 1.38 16 36 H 0.06 1.54 7.96 -2.38 -0.02 1.52 16 Total: -1.00 -75.55 301.60 1.86 -73.69 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.07 Total: 9.90 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.08 Total: -9.32 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.41 Total: -74.13 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.75 Total: -35.61 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -75.55 1.86 -73.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598391662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.069 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds