Wall clock time and date at job start Mon Mar 30 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48500 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46925 * 299.99899 * 3 2 1 6 6 H 1.48496 * 109.47085 * 60.00015 * 3 2 1 7 7 C 1.37875 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47173 * 180.02562 * 10 9 7 12 12 C 1.34780 * 120.00042 * 179.97438 * 11 10 9 13 13 O 1.21622 * 120.00150 * 0.02562 * 12 11 10 14 14 C 1.47277 * 120.00034 * 179.97438 * 12 11 10 15 15 C 1.40303 * 120.18978 * 270.00096 * 14 12 11 16 16 O 1.35655 * 120.12269 * 359.97438 * 15 14 12 17 17 C 1.38463 * 119.75178 * 179.70522 * 15 14 12 18 18 C 1.38470 * 120.13400 * 0.27844 * 17 15 14 19 19 F 1.35102 * 119.80965 * 179.97438 * 18 17 15 20 20 C 1.38669 * 120.38041 * 359.97438 * 18 17 15 21 21 C 1.38055 * 120.24239 * 0.02869 * 20 18 17 22 22 F 1.35100 * 120.06697 * 179.97438 * 21 20 18 23 23 H 0.96999 * 119.99510 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46791 * 60.00246 * 9 7 2 25 25 H 1.08994 * 109.47382 * 300.00396 * 9 7 2 26 26 H 1.09002 * 109.47102 * 59.99688 * 10 9 7 27 27 H 1.09007 * 109.46861 * 300.00244 * 10 9 7 28 28 H 0.97001 * 120.00177 * 359.97438 * 11 10 9 29 29 H 0.96700 * 114.00230 * 269.72625 * 16 15 14 30 30 H 1.08001 * 119.92789 * 180.25746 * 17 15 14 31 31 H 1.07996 * 119.87622 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9307 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.4029 -6.0980 -0.0014 14 6 1.4503 -7.3734 -0.0018 15 6 1.0980 -7.9848 1.2109 16 8 1.4349 -7.4035 2.3894 17 6 0.4004 -9.1807 1.2002 18 6 0.0566 -9.7743 -0.0026 19 9 -0.6237 -10.9415 -0.0053 20 6 0.4065 -9.1776 -1.2044 21 6 1.1022 -7.9851 -1.2121 22 9 1.4418 -7.4071 -2.3850 23 1 -0.4849 0.8401 -0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.5428 -4.9307 -0.0011 29 1 2.2956 -7.6801 2.7325 30 1 0.1241 -9.6517 2.1321 31 1 0.1346 -9.6478 -2.1378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612335512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:42 Heat of formation + Delta-G solvation = -151.669919 kcal Electronic energy + Delta-G solvation = -19862.154420 eV Core-core repulsion = 16165.664083 eV Total energy + Delta-G solvation = -3696.490337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.44126 -49.30142 -40.38137 -38.60454 -36.81345 -34.93350 -32.89502 -31.25677 -30.45901 -29.34513 -25.20797 -23.71111 -23.41253 -21.16057 -20.56376 -19.33615 -17.93904 -17.77199 -17.28627 -16.52895 -16.30982 -16.17686 -15.70707 -15.36895 -15.05535 -14.91818 -14.68975 -14.50593 -14.29524 -13.53154 -12.98362 -12.64706 -12.36019 -12.29312 -11.95391 -11.40860 -11.22961 -11.06163 -10.65229 -10.37492 -10.03965 -9.56855 -9.27883 -9.25092 -9.14027 -8.62438 -8.40013 -6.10161 -4.13220 0.33486 0.50444 2.65935 2.71339 3.17005 3.28146 3.35519 3.39928 3.50607 3.80596 3.93720 4.39142 4.41117 4.49739 4.69380 5.05831 5.27038 5.31492 5.40736 5.49109 5.60191 6.16731 6.27580 6.29866 6.67586 6.78211 7.16390 7.49038 7.59496 7.83899 7.88661 8.23913 8.43980 8.92749 9.51756 11.01494 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.003694 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.614226 B = 7577.670534 C = 7697.129336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.702 5.702 12 C 0.562 3.438 13 O -0.538 6.538 14 C -0.195 4.195 15 C 0.205 3.795 16 O -0.480 6.480 17 C -0.195 4.195 18 C 0.160 3.840 19 F -0.125 7.125 20 C -0.203 4.203 21 C 0.182 3.818 22 F -0.114 7.114 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.401 0.599 29 H 0.406 0.594 30 H 0.155 0.845 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -20.642 1.226 20.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.351 5.351 12 C 0.345 3.655 13 O -0.416 6.416 14 C -0.200 4.200 15 C 0.158 3.842 16 O -0.292 6.292 17 C -0.214 4.214 18 C 0.140 3.860 19 F -0.103 7.103 20 C -0.223 4.223 21 C 0.161 3.839 22 F -0.092 7.092 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.266 0.734 30 H 0.173 0.827 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.962 -20.209 1.135 20.264 hybrid contribution 0.222 0.589 -0.163 0.650 sum -0.740 -19.620 0.972 19.658 Atomic orbital electron populations 1.69970 1.06102 1.26796 1.50362 1.25000 0.94892 0.99436 0.94956 0.86451 0.80156 0.83301 0.77627 1.19565 1.20924 1.20916 1.21071 0.93280 0.90291 1.51362 0.92144 1.19343 0.94201 0.91018 0.98018 1.21833 0.96170 0.81038 1.01081 1.46320 1.10764 1.06179 1.71797 1.17618 0.87168 0.83192 0.77524 1.90812 1.12926 1.87390 1.50452 1.20588 1.06390 1.00187 0.92836 1.17652 0.93211 0.89020 0.84320 1.84753 1.42109 1.68492 1.33810 1.21328 1.04917 0.96646 0.98516 1.17047 0.93272 0.82647 0.93021 1.91563 1.76788 1.44648 1.97309 1.20940 1.04997 0.96953 0.99412 1.16946 0.95249 0.91197 0.80468 1.91615 1.89645 1.83522 1.44462 0.92872 0.95840 0.95774 0.92150 0.92221 0.76556 0.73440 0.82723 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.58 5.61 -4.05 -0.02 2.56 16 11 N -0.70 -12.75 5.55 -61.43 -0.34 -13.09 16 12 C 0.56 9.85 6.42 -12.58 -0.08 9.77 16 13 O -0.54 -11.14 17.11 5.26 0.09 -11.05 16 14 C -0.20 -2.66 5.64 -104.79 -0.59 -3.25 16 15 C 0.20 2.27 6.71 -38.72 -0.26 2.01 16 16 O -0.48 -5.13 12.95 -18.66 -0.24 -5.37 16 17 C -0.19 -1.73 9.95 -39.41 -0.39 -2.12 16 18 C 0.16 1.45 7.30 -39.34 -0.29 1.17 16 19 F -0.12 -1.12 17.26 2.25 0.04 -1.08 16 20 C -0.20 -1.94 9.98 -39.49 -0.39 -2.33 16 21 C 0.18 2.25 7.28 -38.99 -0.28 1.96 16 22 F -0.11 -1.60 16.83 2.25 0.04 -1.57 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.40 6.56 8.46 -40.82 -0.35 6.21 16 29 H 0.41 2.64 9.06 45.56 0.41 3.05 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -32.56 294.65 -5.14 -37.69 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.01 Total: 2.41 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.86 Total: -3.30 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.40 Total: -38.50 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.15 Total: -16.43 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.56 -5.14 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612335512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.975 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds