Wall clock time and date at job start Mon Mar 30 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48500 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46925 * 299.99899 * 3 2 1 6 6 H 1.48496 * 109.47085 * 60.00015 * 3 2 1 7 7 C 1.37875 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.46492 * 109.47173 * 180.02562 * 10 9 7 12 12 C 1.34780 * 120.00042 * 179.97438 * 11 10 9 13 13 O 1.21622 * 120.00150 * 0.02562 * 12 11 10 14 14 C 1.47277 * 120.00034 * 179.97438 * 12 11 10 15 15 C 1.40303 * 120.18978 * 270.00096 * 14 12 11 16 16 O 1.35655 * 120.12269 * 359.97438 * 15 14 12 17 17 C 1.38463 * 119.75178 * 179.70522 * 15 14 12 18 18 C 1.38470 * 120.13400 * 0.27844 * 17 15 14 19 19 F 1.35102 * 119.80965 * 179.97438 * 18 17 15 20 20 C 1.38669 * 120.38041 * 359.97438 * 18 17 15 21 21 C 1.38055 * 120.24239 * 0.02869 * 20 18 17 22 22 F 1.35100 * 120.06697 * 179.97438 * 21 20 18 23 23 H 0.96999 * 119.99510 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46791 * 60.00246 * 9 7 2 25 25 H 1.08994 * 109.47382 * 300.00396 * 9 7 2 26 26 H 1.09002 * 109.47102 * 59.99688 * 10 9 7 27 27 H 1.09007 * 109.46861 * 300.00244 * 10 9 7 28 28 H 0.97001 * 120.00177 * 359.97438 * 11 10 9 29 29 H 0.96700 * 114.00230 * 269.72625 * 16 15 14 30 30 H 1.08001 * 119.92789 * 180.25746 * 17 15 14 31 31 H 1.07996 * 119.87622 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9307 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.4029 -6.0980 -0.0014 14 6 1.4503 -7.3734 -0.0018 15 6 1.0980 -7.9848 1.2109 16 8 1.4349 -7.4035 2.3894 17 6 0.4004 -9.1807 1.2002 18 6 0.0566 -9.7743 -0.0026 19 9 -0.6237 -10.9415 -0.0053 20 6 0.4065 -9.1776 -1.2044 21 6 1.1022 -7.9851 -1.2121 22 9 1.4418 -7.4071 -2.3850 23 1 -0.4849 0.8401 -0.0004 24 1 0.6241 -2.5566 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.5428 -4.9307 -0.0011 29 1 2.2956 -7.6801 2.7325 30 1 0.1241 -9.6517 2.1321 31 1 0.1346 -9.6478 -2.1378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612335512.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:42 Heat of formation + Delta-G solvation = -175.606925 kcal Electronic energy + Delta-G solvation = -19863.192407 eV Core-core repulsion = 16165.664083 eV Total energy + Delta-G solvation = -3697.528324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.29963 -50.17185 -41.46315 -39.84602 -37.63556 -36.67844 -34.87024 -32.49168 -31.33662 -30.95131 -26.99245 -24.95277 -24.24656 -22.97267 -21.92113 -20.18677 -19.10355 -18.79988 -18.48221 -18.13719 -17.34289 -17.03159 -16.85880 -16.51821 -16.47030 -16.27271 -15.94127 -15.84708 -15.28340 -14.90202 -14.59104 -14.33054 -13.68233 -13.25805 -13.09475 -12.96368 -12.81223 -12.52899 -12.31639 -12.24333 -11.74526 -11.50291 -11.12193 -10.62758 -10.16745 -10.07233 -10.04234 -8.25110 -6.36036 -0.53622 -0.28879 1.29892 1.41281 1.42025 1.55353 1.85699 2.12809 2.38154 2.43286 3.00885 3.09808 3.09837 3.43540 3.67256 3.72637 4.26711 4.38072 4.43505 4.50440 4.55338 4.70579 4.79889 4.83854 5.14992 5.40296 5.42971 5.53892 5.75606 6.12914 6.38659 6.50948 6.76924 6.99844 7.33575 8.87154 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.003694 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.614226 B = 7577.670534 C = 7697.129336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.702 5.702 12 C 0.566 3.434 13 O -0.574 6.574 14 C -0.219 4.219 15 C 0.208 3.792 16 O -0.492 6.492 17 C -0.177 4.177 18 C 0.172 3.828 19 F -0.118 7.118 20 C -0.189 4.189 21 C 0.167 3.833 22 F -0.131 7.131 23 H 0.266 0.734 24 H 0.007 0.993 25 H 0.009 0.991 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.409 0.591 29 H 0.423 0.577 30 H 0.184 0.816 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 -21.893 1.685 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.351 5.351 12 C 0.352 3.648 13 O -0.455 6.455 14 C -0.224 4.224 15 C 0.161 3.839 16 O -0.307 6.307 17 C -0.196 4.196 18 C 0.152 3.848 19 F -0.096 7.096 20 C -0.209 4.209 21 C 0.147 3.853 22 F -0.109 7.109 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.245 0.755 29 H 0.285 0.715 30 H 0.201 0.799 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.272 -21.490 1.601 21.587 hybrid contribution 0.268 0.874 -0.272 0.954 sum -1.004 -20.616 1.328 20.683 Atomic orbital electron populations 1.70075 1.07617 1.27988 1.50995 1.25893 0.95792 1.03182 0.94329 0.85365 0.78982 0.78609 0.77900 1.18841 1.20261 1.20151 1.21479 0.93647 0.91743 1.51577 0.92094 1.19145 0.94224 0.91799 0.96379 1.21345 0.95125 0.81590 1.00310 1.46179 1.11113 1.05595 1.72187 1.18125 0.86860 0.84066 0.75768 1.90778 1.14733 1.88111 1.51843 1.20369 1.08482 0.98851 0.94683 1.17669 0.93302 0.89442 0.83499 1.84714 1.43436 1.69008 1.33524 1.21505 1.03069 0.95298 0.99698 1.17035 0.92449 0.82479 0.92860 1.91593 1.76503 1.44262 1.97265 1.21093 1.03416 0.95542 1.00821 1.17093 0.96502 0.92225 0.79487 1.91572 1.90043 1.84007 1.45259 0.92515 0.97446 0.97248 0.92719 0.93182 0.75533 0.71505 0.79880 0.80120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.55 -30.72 9.11 25.60 0.23 -30.48 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C 0.14 6.14 5.61 86.38 0.48 6.62 16 11 N -0.70 -26.06 5.55 -466.52 -2.59 -28.65 16 12 C 0.57 20.14 6.42 86.62 0.56 20.70 16 13 O -0.57 -24.32 17.11 -4.10 -0.07 -24.39 16 14 C -0.22 -5.84 5.64 -19.97 -0.11 -5.95 16 15 C 0.21 4.24 6.71 22.83 0.15 4.39 16 16 O -0.49 -9.81 12.95 -89.70 -1.16 -10.97 16 17 C -0.18 -2.57 9.95 22.38 0.22 -2.34 16 18 C 0.17 2.55 7.30 22.43 0.16 2.71 16 19 F -0.12 -1.67 17.26 44.97 0.78 -0.90 16 20 C -0.19 -3.14 9.98 22.33 0.22 -2.91 16 21 C 0.17 3.98 7.28 22.65 0.17 4.14 16 22 F -0.13 -3.66 16.83 44.97 0.76 -2.91 16 23 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 2.45 8.14 -2.39 -0.02 2.44 16 27 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.41 13.69 8.46 -92.71 -0.78 12.91 16 29 H 0.42 4.92 9.06 -74.06 -0.67 4.25 16 30 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -70.10 294.65 2.47 -67.63 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -0.25 Total: 9.90 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 2.70 Total: -1.00 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -2.31 Total: -83.12 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.23 Total: -35.36 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.53 Total: -3.81 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.10 2.47 -67.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612335512.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.976 kcal (2) G-P(sol) polarization free energy of solvation -70.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds