Wall clock time and date at job start Mon Mar 30 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32159 * 119.99554 * 2 1 4 4 C 1.32125 * 119.99629 * 180.27611 * 3 2 1 5 5 C 1.38392 * 119.99942 * 359.74170 * 4 3 2 6 6 N 1.32121 * 119.99519 * 359.97438 * 5 4 3 7 7 C 1.32147 * 120.00453 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00167 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47227 * 82.42262 * 8 7 6 10 10 C 1.46496 * 119.99778 * 85.48955 * 9 8 7 11 11 S 1.65594 * 119.99993 * 265.48745 * 9 8 7 12 12 O 1.42105 * 106.40131 * 203.54065 * 11 9 8 13 13 O 1.42102 * 106.40069 * 336.45930 * 11 9 8 14 14 C 1.76202 * 107.21883 * 90.00114 * 11 9 8 15 15 H 1.08000 * 120.00043 * 0.02562 * 14 11 9 16 16 C 1.37875 * 120.00053 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00018 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 119.99967 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47334 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47378 * 209.99754 * 18 16 14 21 21 H 1.48500 * 109.47401 * 330.00008 * 18 16 14 22 22 H 1.09002 * 109.47149 * 264.46345 * 1 2 3 23 23 H 1.08995 * 109.47494 * 24.45984 * 1 2 3 24 24 H 1.08998 * 109.47359 * 144.46601 * 1 2 3 25 25 H 1.08004 * 120.00245 * 179.71251 * 4 3 2 26 26 H 1.07999 * 119.99960 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46597 * 202.42391 * 8 7 6 28 28 H 1.08999 * 109.46809 * 322.42090 * 8 7 6 29 29 H 1.09004 * 109.47238 * 85.58865 * 10 9 8 30 30 H 1.09006 * 109.47306 * 205.58621 * 10 9 8 31 31 H 1.08999 * 109.47785 * 325.58795 * 10 9 8 32 32 H 0.97004 * 119.99794 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4889 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0059 6 7 3.5202 -1.1980 -0.0002 7 6 2.1988 -1.1981 0.0053 8 6 1.4452 -2.5032 0.0112 9 7 1.3645 -3.0143 1.3817 10 6 0.2900 -2.5632 2.2695 11 16 2.4877 -4.1019 1.9273 12 8 1.8769 -4.8054 3.0003 13 8 3.0148 -4.7462 0.7756 14 6 3.8122 -3.1759 2.6295 15 1 3.7716 -2.0967 2.6379 16 6 4.9004 -3.8291 3.1681 17 7 4.9500 -5.1433 3.1574 18 14 6.3042 -2.8475 3.9131 19 1 6.0389 -2.6216 5.3566 20 1 7.5738 -3.6014 3.7553 21 1 6.4160 -1.5391 3.2197 22 1 -0.3633 -0.0992 1.0229 23 1 -0.3634 0.9354 -0.4255 24 1 -0.3634 -0.8363 -0.5972 25 1 4.0289 2.0799 -0.0102 26 1 5.2609 -0.0539 -0.0108 27 1 0.4392 -2.3435 -0.3770 28 1 1.9663 -3.2263 -0.6162 29 1 -0.5959 -3.1778 2.1092 30 1 0.6130 -2.6550 3.3066 31 1 0.0534 -1.5214 2.0536 32 1 5.7155 -5.6028 3.5367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700089287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:40 Heat of formation + Delta-G solvation = -35.609345 kcal Electronic energy + Delta-G solvation = -19558.434315 eV Core-core repulsion = 16453.109880 eV Total energy + Delta-G solvation = -3105.324435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94037 -36.06313 -35.24485 -34.26064 -33.91597 -33.02161 -32.45036 -28.57439 -27.24304 -26.04177 -24.77817 -22.81550 -22.04936 -18.66750 -17.66318 -17.28406 -16.36751 -16.09889 -15.53984 -15.47265 -14.92389 -14.36562 -14.14207 -13.53909 -13.19927 -13.07287 -12.88032 -12.69896 -12.19041 -11.95021 -11.72672 -11.49137 -11.26800 -11.17887 -11.05661 -10.76585 -10.56576 -10.25737 -10.24182 -10.08196 -9.17713 -9.11895 -8.84071 -8.72330 -8.22384 -6.62497 -5.20074 0.95464 1.40951 2.30715 3.08970 3.15354 3.21703 3.87334 4.11640 4.19621 4.39216 4.55714 4.72215 4.72222 4.88629 5.24521 5.33493 5.42640 5.52565 5.59386 5.67151 5.80627 5.81800 5.89925 6.05347 6.16852 6.24692 6.42330 6.58120 6.68162 7.39986 7.51908 7.55383 8.06823 8.09595 8.97735 10.31808 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.009473 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.490791 B = 2955.168264 C = 3937.783257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.080 3.920 3 N -0.446 5.446 4 C 0.042 3.958 5 C 0.048 3.952 6 N -0.397 5.397 7 C 0.070 3.930 8 C 0.170 3.830 9 N -1.007 6.007 10 C 0.094 3.906 11 S 2.711 3.289 12 O -1.004 7.004 13 O -0.997 6.997 14 C -0.998 4.998 15 H 0.096 0.904 16 C 0.135 3.865 17 N -0.849 5.849 18 Si 0.917 3.083 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.264 1.264 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.165 0.835 26 H 0.167 0.833 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 11.206 -5.634 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.061 4.061 3 N -0.161 5.161 4 C -0.118 4.118 5 C -0.112 4.112 6 N -0.111 5.111 7 C -0.074 4.074 8 C 0.042 3.958 9 N -0.841 5.841 10 C -0.052 4.052 11 S 2.812 3.188 12 O -0.995 6.995 13 O -0.987 6.987 14 C -1.132 5.132 15 H 0.114 0.886 16 C -0.082 4.082 17 N -0.480 5.480 18 Si 0.742 3.258 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.188 1.188 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.101 0.899 25 H 0.182 0.818 26 H 0.184 0.816 27 H 0.110 0.890 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.032 10.063 -5.667 13.029 hybrid contribution 1.357 1.285 0.705 1.997 sum -4.674 11.348 -4.962 13.238 Atomic orbital electron populations 1.20842 0.88223 1.03652 1.03507 1.22037 0.98111 0.89172 0.96761 1.68232 1.08995 1.29139 1.09754 1.23674 0.90849 0.99723 0.97573 1.23815 1.02062 0.88685 0.96597 1.68486 1.07851 1.29307 1.05495 1.22782 0.91173 0.97210 0.96185 1.20051 0.99370 0.90927 0.85443 1.58012 1.44084 1.63432 1.18579 1.21418 0.90310 0.98998 0.94442 1.00677 0.72783 0.72378 0.72935 1.93362 1.78348 1.71627 1.56133 1.93347 1.78967 1.73853 1.52519 1.30390 1.22198 1.06166 1.54414 0.88580 1.24684 0.97857 0.94525 0.91130 1.69898 1.31615 1.07695 1.38784 0.86218 0.79704 0.80377 0.79517 1.19475 1.20028 1.18822 0.89757 0.90460 0.89908 0.81804 0.81620 0.88997 0.87095 0.93179 0.90682 0.92468 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 9.11 36.00 0.33 -0.79 16 2 C 0.08 1.19 6.78 -82.41 -0.56 0.63 16 3 N -0.45 -6.65 10.42 -9.28 -0.10 -6.75 16 4 C 0.04 0.57 11.23 -17.37 -0.19 0.38 16 5 C 0.05 0.76 11.23 -17.37 -0.20 0.56 16 6 N -0.40 -7.67 10.42 -9.29 -0.10 -7.77 16 7 C 0.07 1.21 6.37 -82.42 -0.52 0.69 16 8 C 0.17 2.93 5.73 -5.19 -0.03 2.90 16 9 N -1.01 -20.37 3.17 -123.05 -0.39 -20.76 16 10 C 0.09 1.54 10.36 59.84 0.62 2.16 16 11 S 2.71 73.17 4.93 -107.50 -0.53 72.64 16 12 O -1.00 -29.60 17.00 -57.17 -0.97 -30.58 16 13 O -1.00 -29.27 16.58 -57.17 -0.95 -30.22 16 14 C -1.00 -27.89 9.75 30.60 0.30 -27.59 16 15 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 16 C 0.14 3.83 5.46 -17.82 -0.10 3.73 16 17 N -0.85 -25.36 13.19 55.43 0.73 -24.63 16 18 Si 0.92 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 22 H 0.08 0.84 6.21 -51.93 -0.32 0.52 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.73 6.17 -51.93 -0.32 0.41 16 25 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 26 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 27 H 0.09 1.15 5.74 -51.93 -0.30 0.85 16 28 H 0.11 2.09 6.92 -51.93 -0.36 1.73 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.33 7.63 -51.93 -0.40 0.93 16 31 H 0.06 0.75 5.53 -51.93 -0.29 0.46 16 32 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -37.15 289.30 -6.54 -43.68 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -3.22 Total: 1.26 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.35 Total: -17.33 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.15 Total: -59.90 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.92 Total: -60.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 73.17 SS G_CDS: -0.53 Total: 72.64 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -37.15 -6.54 -43.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700089287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.075 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds