Wall clock time and date at job start Mon Mar 30 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32159 * 119.99554 * 2 1 4 4 C 1.32125 * 119.99629 * 180.27611 * 3 2 1 5 5 C 1.38392 * 119.99942 * 359.74170 * 4 3 2 6 6 N 1.32121 * 119.99519 * 359.97438 * 5 4 3 7 7 C 1.32147 * 120.00453 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00167 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47227 * 82.42262 * 8 7 6 10 10 C 1.46496 * 119.99778 * 85.48955 * 9 8 7 11 11 S 1.65594 * 119.99993 * 265.48745 * 9 8 7 12 12 O 1.42105 * 106.40131 * 203.54065 * 11 9 8 13 13 O 1.42102 * 106.40069 * 336.45930 * 11 9 8 14 14 C 1.76202 * 107.21883 * 90.00114 * 11 9 8 15 15 H 1.08000 * 120.00043 * 0.02562 * 14 11 9 16 16 C 1.37875 * 120.00053 * 180.02562 * 14 11 9 17 17 N 1.31519 * 120.00018 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 119.99967 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47334 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47378 * 209.99754 * 18 16 14 21 21 H 1.48500 * 109.47401 * 330.00008 * 18 16 14 22 22 H 1.09002 * 109.47149 * 264.46345 * 1 2 3 23 23 H 1.08995 * 109.47494 * 24.45984 * 1 2 3 24 24 H 1.08998 * 109.47359 * 144.46601 * 1 2 3 25 25 H 1.08004 * 120.00245 * 179.71251 * 4 3 2 26 26 H 1.07999 * 119.99960 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46597 * 202.42391 * 8 7 6 28 28 H 1.08999 * 109.46809 * 322.42090 * 8 7 6 29 29 H 1.09004 * 109.47238 * 85.58865 * 10 9 8 30 30 H 1.09006 * 109.47306 * 205.58621 * 10 9 8 31 31 H 1.08999 * 109.47785 * 325.58795 * 10 9 8 32 32 H 0.97004 * 119.99794 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1677 1.1446 0.0000 4 6 3.4889 1.1446 -0.0055 5 6 4.1809 -0.0539 -0.0059 6 7 3.5202 -1.1980 -0.0002 7 6 2.1988 -1.1981 0.0053 8 6 1.4452 -2.5032 0.0112 9 7 1.3645 -3.0143 1.3817 10 6 0.2900 -2.5632 2.2695 11 16 2.4877 -4.1019 1.9273 12 8 1.8769 -4.8054 3.0003 13 8 3.0148 -4.7462 0.7756 14 6 3.8122 -3.1759 2.6295 15 1 3.7716 -2.0967 2.6379 16 6 4.9004 -3.8291 3.1681 17 7 4.9500 -5.1433 3.1574 18 14 6.3042 -2.8475 3.9131 19 1 6.0389 -2.6216 5.3566 20 1 7.5738 -3.6014 3.7553 21 1 6.4160 -1.5391 3.2197 22 1 -0.3633 -0.0992 1.0229 23 1 -0.3634 0.9354 -0.4255 24 1 -0.3634 -0.8363 -0.5972 25 1 4.0289 2.0799 -0.0102 26 1 5.2609 -0.0539 -0.0108 27 1 0.4392 -2.3435 -0.3770 28 1 1.9663 -3.2263 -0.6162 29 1 -0.5959 -3.1778 2.1092 30 1 0.6130 -2.6550 3.3066 31 1 0.0534 -1.5214 2.0536 32 1 5.7155 -5.6028 3.5367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700089287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:39 Heat of formation + Delta-G solvation = -66.542891 kcal Electronic energy + Delta-G solvation = -19559.775694 eV Core-core repulsion = 16453.109880 eV Total energy + Delta-G solvation = -3106.665814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09073 -37.53029 -37.38117 -36.12199 -35.42292 -35.12959 -33.67227 -29.69051 -28.40774 -28.20117 -26.15445 -23.95930 -23.30852 -20.70338 -19.23970 -18.78495 -18.19404 -17.46473 -17.00742 -16.93546 -16.59572 -15.88499 -15.82338 -15.00634 -14.87321 -14.22294 -13.99165 -13.90450 -13.80588 -13.47852 -13.25884 -13.03847 -12.97161 -12.77130 -12.48172 -12.44196 -12.34431 -12.18846 -12.01294 -11.86944 -11.23927 -11.00210 -10.23712 -9.96792 -9.66415 -8.71853 -7.39976 -0.20049 0.21216 0.39356 1.28933 1.29816 1.45182 2.19049 2.60038 2.65270 2.96502 3.17935 3.28561 3.56486 3.76298 3.87553 4.06604 4.16530 4.31353 4.42066 4.50412 4.56938 4.62815 4.68606 4.83437 4.91269 4.98363 5.08639 5.22674 5.31602 5.55073 5.90761 5.93706 6.42600 6.82315 6.94568 8.23964 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.009473 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.490791 B = 2955.168264 C = 3937.783257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.088 3.912 3 N -0.457 5.457 4 C 0.058 3.942 5 C 0.028 3.972 6 N -0.449 5.449 7 C 0.042 3.958 8 C 0.166 3.834 9 N -1.003 6.003 10 C 0.085 3.915 11 S 2.715 3.285 12 O -1.041 7.041 13 O -1.034 7.034 14 C -1.010 5.010 15 H 0.102 0.898 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.982 3.018 19 H -0.257 1.257 20 H -0.262 1.262 21 H -0.250 1.250 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.206 0.794 26 H 0.183 0.817 27 H 0.143 0.857 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 14.120 -5.680 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.053 4.053 3 N -0.173 5.173 4 C -0.102 4.102 5 C -0.132 4.132 6 N -0.164 5.164 7 C -0.101 4.101 8 C 0.039 3.961 9 N -0.841 5.841 10 C -0.060 4.060 11 S 2.817 3.183 12 O -1.032 7.032 13 O -1.025 7.025 14 C -1.144 5.144 15 H 0.121 0.879 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.801 3.199 19 H -0.181 1.181 20 H -0.186 1.186 21 H -0.173 1.173 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.222 0.778 26 H 0.200 0.800 27 H 0.161 0.839 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.691 12.971 -5.720 15.676 hybrid contribution 1.485 0.469 0.643 1.685 sum -5.206 13.441 -5.078 15.282 Atomic orbital electron populations 1.21020 0.85221 1.05422 1.04714 1.22534 0.99957 0.88102 0.94678 1.68402 1.09542 1.28934 1.10400 1.24279 0.90679 1.00527 0.94709 1.24205 1.03067 0.88650 0.97254 1.68353 1.09446 1.31683 1.06923 1.22767 0.90910 0.97900 0.98480 1.20324 1.02015 0.90531 0.83204 1.57414 1.43511 1.62824 1.20316 1.21742 0.89659 1.01875 0.92698 1.00135 0.73206 0.72984 0.71989 1.93301 1.78962 1.73437 1.57468 1.93288 1.80200 1.75587 1.53376 1.30649 1.22926 1.06499 1.54301 0.87928 1.25886 1.01010 0.95582 0.91402 1.69989 1.33055 1.09661 1.40276 0.85244 0.76261 0.79246 0.79123 1.18125 1.18642 1.17328 0.88556 0.88933 0.87924 0.77763 0.80017 0.83908 0.89784 0.90608 0.92669 0.88560 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.11 71.24 0.65 -1.18 16 2 C 0.09 2.36 6.78 42.53 0.29 2.65 16 3 N -0.46 -12.24 10.42 -183.29 -1.91 -14.15 16 4 C 0.06 1.42 11.23 84.69 0.95 2.37 16 5 C 0.03 0.85 11.23 84.69 0.95 1.80 16 6 N -0.45 -17.25 10.42 -183.29 -1.91 -19.16 16 7 C 0.04 1.40 6.37 42.54 0.27 1.67 16 8 C 0.17 5.56 5.73 85.63 0.49 6.05 16 9 N -1.00 -40.11 3.17 -543.22 -1.72 -41.83 16 10 C 0.08 2.62 10.36 127.77 1.32 3.94 16 11 S 2.72 150.57 4.93 -56.49 -0.28 150.29 16 12 O -1.04 -63.40 17.00 -128.00 -2.18 -65.57 16 13 O -1.03 -63.38 16.58 -128.00 -2.12 -65.51 16 14 C -1.01 -57.39 9.75 67.73 0.66 -56.73 16 15 H 0.10 5.51 7.81 -2.91 -0.02 5.48 16 16 C 0.07 4.20 5.46 84.65 0.46 4.66 16 17 N -0.90 -55.05 13.19 21.45 0.28 -54.77 16 18 Si 0.98 42.86 29.54 68.60 2.03 44.89 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 22 H 0.10 1.47 6.21 -2.39 -0.01 1.45 16 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.10 1.34 6.17 -2.39 -0.01 1.33 16 25 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 26 H 0.18 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.14 3.17 5.74 -2.39 -0.01 3.15 16 28 H 0.08 3.26 6.92 -2.39 -0.02 3.24 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.05 1.93 7.63 -2.38 -0.02 1.91 16 31 H 0.10 2.18 5.53 -2.39 -0.01 2.17 16 32 H 0.30 16.38 8.31 -92.71 -0.77 15.61 16 Total: -1.00 -84.25 289.30 -0.61 -84.86 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.15 Total: 15.71 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 6.05 Total: -34.77 kcal Atomic # 7 Polarization: -124.64 SS G_CDS: -5.26 Total: -129.90 kcal Atomic # 8 Polarization: -126.78 SS G_CDS: -4.30 Total: -131.08 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 150.57 SS G_CDS: -0.28 Total: 150.29 kcal Total: -84.25 -0.61 -84.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700089287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.315 kcal (2) G-P(sol) polarization free energy of solvation -84.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds