Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00268 * 2 1 4 4 H 1.48504 * 109.47605 * 245.00284 * 3 2 1 5 5 H 1.48495 * 109.46906 * 5.00266 * 3 2 1 6 6 H 1.48501 * 109.47097 * 125.00337 * 3 2 1 7 7 C 1.37881 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00218 * 169.45858 * 7 2 1 9 9 C 1.50698 * 119.99949 * 349.45620 * 7 2 1 10 10 C 1.52997 * 115.55284 * 324.52534 * 9 7 2 11 11 N 1.46901 * 109.46839 * 292.02502 * 10 9 7 12 12 C 1.46869 * 110.91577 * 309.39751 * 11 10 9 13 13 C 1.53250 * 109.64223 * 162.35001 * 12 11 10 14 14 S 1.81899 * 108.67276 * 61.88435 * 13 12 11 15 15 C 1.81897 * 101.91345 * 308.59635 * 14 13 12 16 16 H 1.08996 * 109.63542 * 291.59955 * 15 14 13 17 17 C 1.50697 * 109.63095 * 171.20541 * 15 14 13 18 18 O 1.20824 * 120.00600 * 275.00151 * 17 15 14 19 19 O 1.34232 * 120.00176 * 95.00041 * 17 15 14 20 20 C 1.46472 * 110.99832 * 183.32675 * 11 10 9 21 21 C 1.53011 * 117.51649 * 110.23008 * 9 7 2 22 22 C 1.52998 * 59.99973 * 107.47674 * 21 9 7 23 23 H 0.96998 * 120.00322 * 5.00601 * 1 2 3 24 24 H 1.08999 * 109.47336 * 172.02621 * 10 9 7 25 25 H 1.08991 * 109.47172 * 52.02628 * 10 9 7 26 26 H 1.09000 * 109.69138 * 42.18281 * 12 11 10 27 27 H 1.09001 * 109.33807 * 282.28974 * 12 11 10 28 28 H 1.08997 * 109.62845 * 302.07623 * 13 12 11 29 29 H 1.08999 * 109.62725 * 181.69250 * 13 12 11 30 30 H 0.96698 * 117.00179 * 179.97438 * 19 17 15 31 31 H 1.08999 * 109.40732 * 77.64621 * 20 11 10 32 32 H 1.08997 * 109.40697 * 317.88611 * 20 11 10 33 33 H 1.09000 * 117.49425 * 214.97013 * 21 9 7 34 34 H 1.08999 * 117.49659 * 359.97438 * 21 9 7 35 35 H 1.08997 * 117.49661 * 252.50563 * 22 21 9 36 36 H 1.09003 * 117.49625 * 107.49156 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.0091 1.7506 -1.2689 5 1 1.2888 2.7437 0.1221 6 1 3.1922 1.6447 1.1468 7 6 2.0045 -1.1941 -0.0005 8 1 3.0708 -1.2020 -0.1716 9 6 1.2700 -2.4882 0.2377 10 6 0.1101 -2.4153 1.2327 11 7 0.6368 -2.1662 2.5812 12 6 1.7100 -3.1139 2.9083 13 6 2.5255 -2.5806 4.0912 14 16 1.4306 -2.4397 5.5369 15 6 0.0368 -1.4863 4.8609 16 1 0.3619 -0.4701 4.6380 17 6 -1.0861 -1.4497 5.8653 18 8 -1.8829 -2.3567 5.9141 19 8 -1.2011 -0.4095 6.7059 20 6 -0.4402 -2.1681 3.5740 21 6 1.1267 -3.4479 -0.9454 22 6 2.0867 -3.7815 0.1982 23 1 -0.4850 0.8368 -0.0733 24 1 -0.4357 -3.3587 1.2243 25 1 -0.5612 -1.6047 0.9493 26 1 2.3638 -3.2405 2.0454 27 1 1.2730 -4.0764 3.1744 28 1 2.9324 -1.6003 3.8431 29 1 3.3402 -3.2694 4.3145 30 1 -1.9376 -0.4305 7.3321 31 1 -0.7281 -3.1961 3.7940 32 1 -1.3004 -1.6296 3.1762 33 1 0.2059 -4.0271 -1.0149 34 1 1.5633 -3.1429 -1.8965 35 1 3.1550 -3.6963 -0.0005 36 1 1.7975 -4.5804 0.8811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703797762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = -44.104811 kcal Electronic energy + Delta-G solvation = -19661.133167 eV Core-core repulsion = 16658.980684 eV Total energy + Delta-G solvation = -3002.152483 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24593 -38.30311 -36.22311 -35.46716 -32.23061 -31.56528 -30.11357 -25.87728 -25.05807 -24.03632 -21.74831 -21.11162 -20.37454 -19.03333 -18.13392 -17.13674 -16.41832 -16.17561 -15.40371 -14.74710 -14.56751 -14.39965 -13.85450 -13.67849 -13.25857 -13.11387 -12.89611 -12.68847 -11.81696 -11.57099 -11.52147 -11.48875 -11.25520 -10.96239 -10.79634 -10.56482 -10.50006 -10.40096 -10.10050 -9.65937 -9.35393 -9.12664 -8.63674 -8.08580 -7.64004 -7.43750 -6.01114 -4.07371 1.32161 2.50449 2.64905 2.99834 3.28486 3.34483 3.38014 4.36309 4.46829 4.79144 5.00768 5.25169 5.34192 5.39189 5.48112 5.60909 5.70809 5.84627 6.03637 6.05811 6.22492 6.32960 6.36059 6.42489 6.54387 6.56306 6.63681 6.86736 7.07670 7.24409 7.54209 7.82904 7.85806 7.94211 8.06822 8.42230 8.86754 9.53620 10.97641 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.007197 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.374741 B = 3889.788636 C = 4423.014158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.082 3.918 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.477 4.477 8 H 0.057 0.943 9 C 0.062 3.938 10 C 0.090 3.910 11 N -0.521 5.521 12 C 0.036 3.964 13 C -0.067 4.067 14 S -0.246 6.246 15 C -0.046 4.046 16 H 0.128 0.872 17 C 0.506 3.494 18 O -0.502 6.502 19 O -0.508 6.508 20 C 0.075 3.925 21 C -0.202 4.202 22 C -0.223 4.223 23 H 0.262 0.738 24 H -0.008 1.008 25 H 0.140 0.860 26 H 0.124 0.876 27 H 0.031 0.969 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.410 0.590 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -2.346 8.865 9.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.120 4.120 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.062 3.938 10 C -0.036 4.036 11 N -0.245 5.245 12 C -0.093 4.093 13 C -0.215 4.215 14 S -0.020 6.020 15 C -0.176 4.176 16 H 0.146 0.854 17 C 0.345 3.655 18 O -0.389 6.389 19 O -0.320 6.320 20 C -0.055 4.055 21 C -0.241 4.241 22 C -0.261 4.261 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.157 0.843 26 H 0.142 0.858 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.268 0.732 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.316 -2.379 9.710 10.002 hybrid contribution -0.479 0.471 -0.756 1.011 sum -0.163 -1.908 8.954 9.157 Atomic orbital electron populations 1.69541 1.06061 1.26646 1.49417 1.24803 0.94637 0.98805 0.93776 0.86636 0.79712 0.82963 0.78511 1.20645 1.21325 1.19999 1.20332 0.93637 0.89008 1.48458 0.92484 1.18991 0.93650 0.88418 0.92766 1.22143 0.97705 0.99760 0.83992 1.61023 1.09672 1.51297 1.02495 1.22806 0.95513 0.92533 0.98420 1.23705 0.98127 1.06114 0.93578 1.86646 1.20755 1.72449 1.22156 1.22831 0.93731 1.05635 0.95360 0.85437 1.22463 0.84637 0.78838 0.79524 1.90709 1.42522 1.37135 1.68533 1.84553 1.54006 1.46108 1.47313 1.21929 0.95013 0.99241 0.89341 1.23026 0.99088 1.07199 0.94738 1.23041 0.97057 1.02552 1.03413 0.92784 0.99029 0.84280 0.85822 0.95116 0.88289 0.87724 0.73163 0.93258 0.89568 0.91816 0.90284 0.90429 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.88 10.57 55.43 0.59 -22.29 16 2 C 0.08 2.10 5.25 -17.82 -0.09 2.01 16 3 Si 0.89 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.48 -12.10 8.99 -34.44 -0.31 -12.41 16 8 H 0.06 1.46 7.84 -52.49 -0.41 1.05 16 9 C 0.06 1.43 1.31 -155.66 -0.20 1.23 16 10 C 0.09 1.99 4.53 -3.82 -0.02 1.97 16 11 N -0.52 -10.36 4.46 -234.70 -1.05 -11.40 16 12 C 0.04 0.65 4.45 -3.71 -0.02 0.63 16 13 C -0.07 -1.04 6.67 37.29 0.25 -0.79 16 14 S -0.25 -3.92 21.76 -107.50 -2.34 -6.26 16 15 C -0.05 -0.75 3.22 -27.76 -0.09 -0.84 16 16 H 0.13 2.12 8.14 -51.93 -0.42 1.70 16 17 C 0.51 7.78 7.37 36.00 0.27 8.05 16 18 O -0.50 -8.77 17.08 -18.75 -0.32 -9.09 16 19 O -0.51 -6.16 13.42 -39.26 -0.53 -6.69 16 20 C 0.07 1.36 4.35 -3.93 -0.02 1.34 16 21 C -0.20 -4.35 9.91 -26.73 -0.26 -4.62 16 22 C -0.22 -4.46 7.31 -26.73 -0.20 -4.66 16 23 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 24 H -0.01 -0.18 8.07 -51.93 -0.42 -0.60 16 25 H 0.14 3.45 5.26 -51.93 -0.27 3.18 16 26 H 0.12 2.32 3.92 -51.93 -0.20 2.11 16 27 H 0.03 0.54 7.92 -51.93 -0.41 0.13 16 28 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.41 2.90 9.10 45.56 0.41 3.31 16 31 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 32 H 0.09 1.59 7.95 -51.93 -0.41 1.18 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.07 1.26 7.22 -51.93 -0.38 0.89 16 LS Contribution 303.70 15.07 4.58 4.58 Total: -1.00 -27.83 303.70 -8.95 -36.78 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.16 Total: 7.21 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.69 Total: -8.10 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: -0.46 Total: -33.69 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.85 Total: -15.78 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.34 Total: -6.26 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.83 -8.95 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703797762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.324 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds