Wall clock time and date at job start Mon Mar 30 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00268 * 2 1 4 4 H 1.48504 * 109.47605 * 245.00284 * 3 2 1 5 5 H 1.48495 * 109.46906 * 5.00266 * 3 2 1 6 6 H 1.48501 * 109.47097 * 125.00337 * 3 2 1 7 7 C 1.37881 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00218 * 169.45858 * 7 2 1 9 9 C 1.50698 * 119.99949 * 349.45620 * 7 2 1 10 10 C 1.52997 * 115.55284 * 324.52534 * 9 7 2 11 11 N 1.46901 * 109.46839 * 292.02502 * 10 9 7 12 12 C 1.46869 * 110.91577 * 309.39751 * 11 10 9 13 13 C 1.53250 * 109.64223 * 162.35001 * 12 11 10 14 14 S 1.81899 * 108.67276 * 61.88435 * 13 12 11 15 15 C 1.81897 * 101.91345 * 308.59635 * 14 13 12 16 16 H 1.08996 * 109.63542 * 291.59955 * 15 14 13 17 17 C 1.50697 * 109.63095 * 171.20541 * 15 14 13 18 18 O 1.20824 * 120.00600 * 275.00151 * 17 15 14 19 19 O 1.34232 * 120.00176 * 95.00041 * 17 15 14 20 20 C 1.46472 * 110.99832 * 183.32675 * 11 10 9 21 21 C 1.53011 * 117.51649 * 110.23008 * 9 7 2 22 22 C 1.52998 * 59.99973 * 107.47674 * 21 9 7 23 23 H 0.96998 * 120.00322 * 5.00601 * 1 2 3 24 24 H 1.08999 * 109.47336 * 172.02621 * 10 9 7 25 25 H 1.08991 * 109.47172 * 52.02628 * 10 9 7 26 26 H 1.09000 * 109.69138 * 42.18281 * 12 11 10 27 27 H 1.09001 * 109.33807 * 282.28974 * 12 11 10 28 28 H 1.08997 * 109.62845 * 302.07623 * 13 12 11 29 29 H 1.08999 * 109.62725 * 181.69250 * 13 12 11 30 30 H 0.96698 * 117.00179 * 179.97438 * 19 17 15 31 31 H 1.08999 * 109.40732 * 77.64621 * 20 11 10 32 32 H 1.08997 * 109.40697 * 317.88611 * 20 11 10 33 33 H 1.09000 * 117.49425 * 214.97013 * 21 9 7 34 34 H 1.08999 * 117.49659 * 359.97438 * 21 9 7 35 35 H 1.08997 * 117.49661 * 252.50563 * 22 21 9 36 36 H 1.09003 * 117.49625 * 107.49156 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.0091 1.7506 -1.2689 5 1 1.2888 2.7437 0.1221 6 1 3.1922 1.6447 1.1468 7 6 2.0045 -1.1941 -0.0005 8 1 3.0708 -1.2020 -0.1716 9 6 1.2700 -2.4882 0.2377 10 6 0.1101 -2.4153 1.2327 11 7 0.6368 -2.1662 2.5812 12 6 1.7100 -3.1139 2.9083 13 6 2.5255 -2.5806 4.0912 14 16 1.4306 -2.4397 5.5369 15 6 0.0368 -1.4863 4.8609 16 1 0.3619 -0.4701 4.6380 17 6 -1.0861 -1.4497 5.8653 18 8 -1.8829 -2.3567 5.9141 19 8 -1.2011 -0.4095 6.7059 20 6 -0.4402 -2.1681 3.5740 21 6 1.1267 -3.4479 -0.9454 22 6 2.0867 -3.7815 0.1982 23 1 -0.4850 0.8368 -0.0733 24 1 -0.4357 -3.3587 1.2243 25 1 -0.5612 -1.6047 0.9493 26 1 2.3638 -3.2405 2.0454 27 1 1.2730 -4.0764 3.1744 28 1 2.9324 -1.6003 3.8431 29 1 3.3402 -3.2694 4.3145 30 1 -1.9376 -0.4305 7.3321 31 1 -0.7281 -3.1961 3.7940 32 1 -1.3004 -1.6296 3.1762 33 1 0.2059 -4.0271 -1.0149 34 1 1.5633 -3.1429 -1.8965 35 1 3.1550 -3.6963 -0.0005 36 1 1.7975 -4.5804 0.8811 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703797762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:55 Heat of formation + Delta-G solvation = -61.231686 kcal Electronic energy + Delta-G solvation = -19661.875844 eV Core-core repulsion = 16658.980684 eV Total energy + Delta-G solvation = -3002.895160 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44899 -39.88659 -37.43818 -36.97450 -34.12996 -32.92001 -31.56006 -27.67975 -26.67379 -25.48202 -23.25334 -22.50278 -21.81404 -20.81844 -19.30782 -18.47336 -18.00874 -17.58758 -16.72075 -16.54435 -16.04650 -15.90383 -15.46860 -15.16158 -14.64024 -14.45997 -14.25734 -14.19059 -13.34568 -13.27198 -12.98552 -12.84451 -12.77005 -12.68504 -12.35519 -12.20096 -12.13957 -11.91765 -11.68048 -11.20505 -10.99651 -10.93156 -10.31455 -9.90207 -9.10652 -8.79254 -7.92076 -6.03838 0.07235 1.26879 1.39720 1.46925 1.50974 1.55980 1.84324 2.49268 2.95129 3.22104 3.45607 3.71618 3.90648 4.03037 4.17604 4.28101 4.30294 4.46966 4.48557 4.52785 4.63786 4.74182 4.83016 4.91246 5.01968 5.04793 5.16420 5.40448 5.42938 5.55847 5.66980 6.14271 6.29351 6.33924 6.58245 6.83566 6.93939 7.58383 9.03716 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.007197 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.374741 B = 3889.788636 C = 4423.014158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.045 3.955 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.049 0.951 9 C 0.035 3.965 10 C 0.100 3.900 11 N -0.533 5.533 12 C 0.038 3.962 13 C -0.062 4.062 14 S -0.235 6.235 15 C -0.049 4.049 16 H 0.124 0.876 17 C 0.515 3.485 18 O -0.526 6.526 19 O -0.499 6.499 20 C 0.081 3.919 21 C -0.208 4.208 22 C -0.193 4.193 23 H 0.259 0.741 24 H -0.009 1.009 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.434 0.566 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.874 -2.640 10.073 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.155 4.155 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.026 4.026 11 N -0.257 5.257 12 C -0.091 4.091 13 C -0.211 4.211 14 S -0.009 6.009 15 C -0.178 4.178 16 H 0.142 0.858 17 C 0.355 3.645 18 O -0.416 6.416 19 O -0.313 6.313 20 C -0.049 4.049 21 C -0.247 4.247 22 C -0.230 4.230 23 H 0.069 0.931 24 H 0.009 0.991 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.153 0.847 30 H 0.296 0.704 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.182 -2.662 10.942 11.323 hybrid contribution -0.752 0.564 -1.111 1.456 sum 0.429 -2.098 9.830 10.061 Atomic orbital electron populations 1.69696 1.06836 1.26789 1.50234 1.25336 0.95223 1.01038 0.93931 0.85877 0.78640 0.80231 0.78330 1.20575 1.21487 1.19828 1.20533 0.93399 0.90364 1.48333 0.93284 1.19032 0.94877 0.88726 0.93899 1.21820 0.97069 0.98483 0.85263 1.60969 1.10469 1.52305 1.01908 1.22781 0.94836 0.92442 0.98994 1.23698 0.98413 1.06352 0.92601 1.86616 1.20175 1.72208 1.21899 1.22745 0.94650 1.05317 0.95132 0.85763 1.22154 0.83834 0.78998 0.79516 1.90707 1.43274 1.38240 1.69379 1.84491 1.55176 1.44414 1.47198 1.21823 0.94360 0.98950 0.89742 1.23032 1.00102 1.07048 0.94496 1.23002 0.96940 1.01004 1.02050 0.93134 0.99080 0.87077 0.86685 0.94625 0.89125 0.84708 0.70359 0.93776 0.90718 0.91036 0.91089 0.89789 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.28 10.57 21.45 0.23 -47.06 16 2 C 0.05 2.30 5.25 84.66 0.44 2.75 16 3 Si 0.94 41.55 29.55 68.60 2.03 43.58 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.49 -24.72 8.99 25.60 0.23 -24.49 16 8 H 0.05 2.49 7.84 -2.91 -0.02 2.47 16 9 C 0.04 1.60 1.31 -52.92 -0.07 1.53 16 10 C 0.10 4.45 4.53 86.30 0.39 4.84 16 11 N -0.53 -20.91 4.46 -896.46 -4.00 -24.92 16 12 C 0.04 1.29 4.45 86.39 0.38 1.68 16 13 C -0.06 -1.80 6.67 72.07 0.48 -1.32 16 14 S -0.23 -7.00 21.76 -56.49 -1.23 -8.23 16 15 C -0.05 -1.55 3.22 29.93 0.10 -1.45 16 16 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 17 C 0.52 15.10 7.37 71.23 0.52 15.63 16 18 O -0.53 -17.83 17.08 21.97 0.38 -17.45 16 19 O -0.50 -10.98 13.42 -51.44 -0.69 -11.67 16 20 C 0.08 2.93 4.35 86.47 0.38 3.30 16 21 C -0.21 -8.82 9.91 30.60 0.30 -8.51 16 22 C -0.19 -7.37 7.31 30.59 0.22 -7.15 16 23 H 0.26 13.26 8.32 -92.71 -0.77 12.49 16 24 H -0.01 -0.38 8.07 -2.39 -0.02 -0.40 16 25 H 0.11 5.64 5.26 -2.39 -0.01 5.62 16 26 H 0.12 4.10 3.92 -2.39 -0.01 4.09 16 27 H 0.04 1.17 7.92 -2.39 -0.02 1.16 16 28 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.43 4.98 9.10 -74.06 -0.67 4.31 16 31 H 0.04 1.63 7.71 -2.39 -0.02 1.61 16 32 H 0.07 2.81 7.95 -2.39 -0.02 2.80 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.09 3.00 7.22 -2.39 -0.02 2.99 16 Total: -1.00 -58.18 303.70 0.52 -57.66 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.42 Total: 21.29 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 3.39 Total: -13.20 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -3.78 Total: -71.97 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.32 Total: -29.12 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.23 Total: -8.23 kcal Total: -58.18 0.52 -57.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703797762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.567 kcal (2) G-P(sol) polarization free energy of solvation -58.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds