Wall clock time and date at job start Mon Mar 30 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30502 * 125.64537 * 2 1 4 4 C 1.34132 * 109.25002 * 180.02562 * 3 2 1 5 5 C 1.34666 * 108.02253 * 0.02562 * 4 3 2 6 6 S 1.76197 * 126.59051 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40595 * 156.48495 * 6 5 4 8 8 O 1.42103 * 106.40282 * 23.56061 * 6 5 4 9 9 N 1.65601 * 107.21917 * 270.02524 * 6 5 4 10 10 C 1.36940 * 119.99925 * 97.56090 * 9 6 5 11 11 H 1.08011 * 119.99489 * 234.10837 * 10 9 6 12 12 C 1.38803 * 120.00487 * 54.11037 * 10 9 6 13 13 N 1.31623 * 120.00416 * 203.34725 * 12 10 9 14 14 Si 1.86801 * 119.99900 * 23.34185 * 12 10 9 15 15 H 1.48499 * 109.47295 * 263.88815 * 14 12 10 16 16 H 1.48499 * 109.47078 * 23.88801 * 14 12 10 17 17 H 1.48501 * 109.47045 * 143.88862 * 14 12 10 18 18 C 1.46499 * 120.00273 * 277.55647 * 9 6 5 19 19 C 1.52995 * 117.50340 * 189.65475 * 18 9 6 20 20 C 1.52998 * 60.00117 * 252.51200 * 19 18 9 21 21 N 1.35041 * 125.65304 * 180.31485 * 2 1 3 22 22 H 0.97005 * 126.39692 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.47107 * 89.97316 * 1 2 3 24 24 H 1.09004 * 109.47321 * 209.96933 * 1 2 3 25 25 H 1.08992 * 109.47536 * 329.97434 * 1 2 3 26 26 H 1.08007 * 125.98470 * 180.02562 * 4 3 2 27 27 H 0.97001 * 120.00217 * 179.97438 * 13 12 10 28 28 H 1.09003 * 115.55001 * 335.36376 * 18 9 6 29 29 H 1.09000 * 117.49816 * 359.97438 * 19 18 9 30 30 H 1.08997 * 117.50369 * 145.02054 * 19 18 9 31 31 H 1.09005 * 117.50042 * 252.50888 * 20 19 18 32 32 H 1.09004 * 117.50075 * 107.48884 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5925 -0.6642 -0.0015 6 16 5.0365 -1.6739 -0.0032 7 8 4.6495 -2.9287 0.5401 8 8 6.0818 -0.8802 0.5415 9 7 5.4376 -1.9532 -1.5854 10 6 6.3993 -1.1907 -2.1929 11 1 6.1785 -0.6799 -3.1186 12 6 7.6577 -1.0741 -1.6190 13 7 8.4157 -0.0355 -1.9002 14 14 8.2756 -2.3914 -0.4474 15 1 8.0136 -1.9711 0.9526 16 1 7.5689 -3.6684 -0.7213 17 1 9.7354 -2.5817 -0.6421 18 6 4.7637 -3.0161 -2.3354 19 6 5.3276 -3.3768 -3.7110 20 6 4.0052 -2.6151 -3.6022 21 7 2.2941 -1.0973 -0.0060 22 1 1.9952 -2.0201 -0.0108 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3634 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 4.4098 1.3412 -0.0003 27 1 9.2950 0.0462 -1.4988 28 1 4.3472 -3.8243 -1.7341 29 1 6.1999 -2.8231 -4.0584 30 1 5.2825 -4.4226 -4.0151 31 1 3.0900 -3.1597 -3.8346 32 1 4.0077 -1.5604 -3.8777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706817907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:16 Heat of formation + Delta-G solvation = 21.596871 kcal Electronic energy + Delta-G solvation = -19678.093617 eV Core-core repulsion = 16575.249829 eV Total energy + Delta-G solvation = -3102.843788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60588 -37.45723 -36.09470 -34.69263 -33.46379 -32.18315 -31.59999 -31.34960 -26.83669 -24.96588 -21.80223 -21.59213 -20.69926 -20.48040 -19.21492 -18.52802 -16.84054 -16.20007 -15.66266 -15.06528 -14.94902 -14.48993 -14.05161 -13.72678 -13.41459 -13.16346 -13.03419 -12.70122 -12.43222 -11.86692 -11.63160 -11.61439 -11.16437 -10.98727 -10.87525 -10.81829 -10.39176 -10.16242 -9.93526 -9.73761 -9.68623 -9.52047 -8.89122 -8.33079 -7.83792 -6.73896 -4.41265 1.42617 2.05649 3.20052 3.31787 3.34976 3.39931 3.43688 4.04589 4.22291 4.47557 4.59744 4.72371 4.84456 5.13096 5.38577 5.43912 5.50096 5.59286 5.61303 5.65407 5.80804 6.03557 6.07992 6.15219 6.39336 6.54437 6.82954 7.00870 7.03523 7.55174 7.60776 8.01181 8.24427 8.76623 8.90902 10.27676 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.009027 C = 0.007957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.353737 B = 3100.915604 C = 3517.896282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.216 3.784 3 N -0.502 5.502 4 C 0.078 3.922 5 C -0.556 4.556 6 S 2.533 3.467 7 O -1.006 7.006 8 O -0.944 6.944 9 N -0.798 5.798 10 C -0.259 4.259 11 H 0.097 0.903 12 C 0.102 3.898 13 N -0.799 5.799 14 Si 0.839 3.161 15 H -0.239 1.239 16 H -0.252 1.252 17 H -0.276 1.276 18 C 0.084 3.916 19 C -0.162 4.162 20 C -0.205 4.205 21 N -0.519 5.519 22 H 0.420 0.580 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.182 0.818 27 H 0.286 0.714 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -4.261 -1.323 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.050 4.050 3 N -0.224 5.224 4 C -0.074 4.074 5 C -0.747 4.747 6 S 2.635 3.365 7 O -0.996 6.996 8 O -0.932 6.932 9 N -0.619 5.619 10 C -0.410 4.410 11 H 0.114 0.886 12 C -0.118 4.118 13 N -0.433 5.433 14 Si 0.662 3.338 15 H -0.163 1.163 16 H -0.176 1.176 17 H -0.202 1.202 18 C -0.024 4.024 19 C -0.201 4.201 20 C -0.244 4.244 21 N -0.121 5.121 22 H 0.258 0.742 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.199 0.801 27 H 0.097 0.903 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.046 -3.629 -0.265 10.685 hybrid contribution 0.053 -1.124 0.368 1.184 sum -9.994 -4.753 0.103 11.067 Atomic orbital electron populations 1.20200 0.84863 1.03976 1.03612 1.23691 0.95746 0.82598 1.02965 1.70250 1.02410 1.28499 1.21208 1.22305 0.94641 0.91752 0.98742 1.35386 1.04940 1.11911 1.22434 1.11603 0.73432 0.73298 0.78167 1.93330 1.84041 1.42182 1.80031 1.93471 1.51589 1.70888 1.77242 1.52628 1.41709 1.36674 1.30929 1.18791 0.87904 1.25964 1.08335 0.88571 1.25775 0.95397 0.95560 0.95093 1.69797 1.10900 1.24166 1.38432 0.87313 0.79848 0.82347 0.84252 1.16303 1.17555 1.20187 1.21490 1.00622 0.92344 0.87966 1.23164 0.98155 0.99973 0.98771 1.23310 0.95191 1.01453 1.04479 1.42839 1.04981 1.09604 1.54681 0.74174 0.89973 0.90788 0.89140 0.80136 0.90308 0.86167 0.86799 0.89401 0.89683 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.51 36.01 0.38 -0.34 16 2 C 0.22 3.58 8.15 -155.42 -1.27 2.31 16 3 N -0.50 -9.99 11.25 -10.81 -0.12 -10.11 16 4 C 0.08 1.68 11.64 -17.81 -0.21 1.47 16 5 C -0.56 -11.78 7.27 -16.57 -0.12 -11.90 16 6 S 2.53 60.28 4.59 -107.50 -0.49 59.79 16 7 O -1.01 -24.49 16.98 -57.17 -0.97 -25.46 16 8 O -0.94 -25.30 12.76 -57.17 -0.73 -26.03 16 9 N -0.80 -18.09 2.42 -53.43 -0.13 -18.22 16 10 C -0.26 -6.39 7.87 -15.06 -0.12 -6.51 16 11 H 0.10 2.42 8.05 -52.48 -0.42 1.99 16 12 C 0.10 2.65 4.53 -17.43 -0.08 2.58 16 13 N -0.80 -21.28 13.97 55.49 0.78 -20.50 16 14 Si 0.84 20.84 25.39 -169.99 -4.32 16.52 16 15 H -0.24 -6.30 6.32 56.52 0.36 -5.94 16 16 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.08 1.59 6.42 -67.93 -0.44 1.16 16 19 C -0.16 -2.67 9.85 -26.73 -0.26 -2.93 16 20 C -0.20 -3.26 10.25 -26.73 -0.27 -3.54 16 21 N -0.52 -9.05 6.15 -9.45 -0.06 -9.10 16 22 H 0.42 6.05 8.96 -40.82 -0.37 5.68 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.18 3.81 8.06 -52.48 -0.42 3.38 16 27 H 0.29 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.12 2.13 7.47 -51.93 -0.39 1.74 16 29 H 0.11 2.05 7.11 -51.93 -0.37 1.68 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -31.42 287.36 -7.79 -39.21 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.68 Total: 7.28 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -2.39 Total: -17.71 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.47 Total: -57.94 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -1.70 Total: -51.48 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.32 Total: 16.52 kcal Atomic # 16 Polarization: 60.28 SS G_CDS: -0.49 Total: 59.79 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.42 -7.79 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706817907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.803 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds