Wall clock time and date at job start Mon Mar 30 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30502 * 125.64537 * 2 1 4 4 C 1.34132 * 109.25002 * 180.02562 * 3 2 1 5 5 C 1.34666 * 108.02253 * 0.02562 * 4 3 2 6 6 S 1.76197 * 126.59051 * 179.97438 * 5 4 3 7 7 O 1.42103 * 106.40595 * 156.48495 * 6 5 4 8 8 O 1.42103 * 106.40282 * 23.56061 * 6 5 4 9 9 N 1.65601 * 107.21917 * 270.02524 * 6 5 4 10 10 C 1.36940 * 119.99925 * 97.56090 * 9 6 5 11 11 H 1.08011 * 119.99489 * 234.10837 * 10 9 6 12 12 C 1.38803 * 120.00487 * 54.11037 * 10 9 6 13 13 N 1.31623 * 120.00416 * 203.34725 * 12 10 9 14 14 Si 1.86801 * 119.99900 * 23.34185 * 12 10 9 15 15 H 1.48499 * 109.47295 * 263.88815 * 14 12 10 16 16 H 1.48499 * 109.47078 * 23.88801 * 14 12 10 17 17 H 1.48501 * 109.47045 * 143.88862 * 14 12 10 18 18 C 1.46499 * 120.00273 * 277.55647 * 9 6 5 19 19 C 1.52995 * 117.50340 * 189.65475 * 18 9 6 20 20 C 1.52998 * 60.00117 * 252.51200 * 19 18 9 21 21 N 1.35041 * 125.65304 * 180.31485 * 2 1 3 22 22 H 0.97005 * 126.39692 * 359.97438 * 21 2 1 23 23 H 1.09004 * 109.47107 * 89.97316 * 1 2 3 24 24 H 1.09004 * 109.47321 * 209.96933 * 1 2 3 25 25 H 1.08992 * 109.47536 * 329.97434 * 1 2 3 26 26 H 1.08007 * 125.98470 * 180.02562 * 4 3 2 27 27 H 0.97001 * 120.00217 * 179.97438 * 13 12 10 28 28 H 1.09003 * 115.55001 * 335.36376 * 18 9 6 29 29 H 1.09000 * 117.49816 * 359.97438 * 19 18 9 30 30 H 1.08997 * 117.50369 * 145.02054 * 19 18 9 31 31 H 1.09005 * 117.50042 * 252.50888 * 20 19 18 32 32 H 1.09004 * 117.50075 * 107.48884 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5925 -0.6642 -0.0015 6 16 5.0365 -1.6739 -0.0032 7 8 4.6495 -2.9287 0.5401 8 8 6.0818 -0.8802 0.5415 9 7 5.4376 -1.9532 -1.5854 10 6 6.3993 -1.1907 -2.1929 11 1 6.1785 -0.6799 -3.1186 12 6 7.6577 -1.0741 -1.6190 13 7 8.4157 -0.0355 -1.9002 14 14 8.2756 -2.3914 -0.4474 15 1 8.0136 -1.9711 0.9526 16 1 7.5689 -3.6684 -0.7213 17 1 9.7354 -2.5817 -0.6421 18 6 4.7637 -3.0161 -2.3354 19 6 5.3276 -3.3768 -3.7110 20 6 4.0052 -2.6151 -3.6022 21 7 2.2941 -1.0973 -0.0060 22 1 1.9952 -2.0201 -0.0108 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3634 -0.8903 0.5134 25 1 -0.3634 0.8897 0.5142 26 1 4.4098 1.3412 -0.0003 27 1 9.2950 0.0462 -1.4988 28 1 4.3472 -3.8243 -1.7341 29 1 6.1999 -2.8231 -4.0584 30 1 5.2825 -4.4226 -4.0151 31 1 3.0900 -3.1597 -3.8346 32 1 4.0077 -1.5604 -3.8777 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706817907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:15 Heat of formation + Delta-G solvation = -1.923324 kcal Electronic energy + Delta-G solvation = -19679.113529 eV Core-core repulsion = 16575.249829 eV Total energy + Delta-G solvation = -3103.863700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.09358 -38.98341 -38.08037 -36.68717 -35.24583 -33.68159 -33.14140 -32.80007 -28.14647 -26.81165 -23.26609 -23.02553 -22.28466 -21.91984 -21.07682 -20.11175 -18.65677 -17.87226 -17.47298 -16.67104 -16.45632 -16.32479 -15.56413 -15.37243 -15.03927 -14.93925 -14.42077 -13.66399 -13.62603 -13.56974 -13.36845 -13.31523 -12.94020 -12.84416 -12.73166 -12.21029 -12.18920 -11.97882 -11.68282 -11.27168 -11.21096 -11.06062 -10.83213 -9.87766 -9.52912 -8.70358 -6.36485 -0.40940 0.49295 1.22530 1.32981 1.41459 1.82963 2.00710 2.20296 2.38066 2.75932 2.94279 3.16107 3.40427 3.62178 4.05352 4.12233 4.23782 4.27999 4.30218 4.58216 4.68999 4.71022 4.83867 4.92938 5.03257 5.18656 5.37909 5.43576 5.54612 5.81799 6.04636 6.31554 6.76564 6.83667 7.04544 8.36230 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.009027 C = 0.007957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.353737 B = 3100.915604 C = 3517.896282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.241 3.759 3 N -0.531 5.531 4 C 0.067 3.933 5 C -0.579 4.579 6 S 2.562 3.438 7 O -1.012 7.012 8 O -0.980 6.980 9 N -0.806 5.806 10 C -0.264 4.264 11 H 0.084 0.916 12 C 0.076 3.924 13 N -0.838 5.838 14 Si 0.851 3.149 15 H -0.266 1.266 16 H -0.241 1.241 17 H -0.256 1.256 18 C 0.046 3.954 19 C -0.155 4.155 20 C -0.180 4.180 21 N -0.512 5.512 22 H 0.435 0.565 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.170 0.830 27 H 0.289 0.711 28 H 0.134 0.866 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 -5.800 -1.749 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.026 4.026 3 N -0.252 5.252 4 C -0.086 4.086 5 C -0.774 4.774 6 S 2.664 3.336 7 O -1.002 7.002 8 O -0.968 6.968 9 N -0.629 5.629 10 C -0.411 4.411 11 H 0.102 0.898 12 C -0.140 4.140 13 N -0.474 5.474 14 Si 0.674 3.326 15 H -0.192 1.192 16 H -0.164 1.164 17 H -0.180 1.180 18 C -0.061 4.061 19 C -0.194 4.194 20 C -0.220 4.220 21 N -0.116 5.116 22 H 0.277 0.723 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.187 0.813 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.111 0.889 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.139 -5.222 -0.754 14.158 hybrid contribution 0.708 -0.641 0.571 1.113 sum -12.431 -5.863 -0.183 13.745 Atomic orbital electron populations 1.20573 0.80045 1.06208 1.05861 1.24877 0.97967 0.81230 0.98486 1.70286 1.01752 1.30120 1.23064 1.22337 0.95566 0.91942 0.98759 1.34559 1.05929 1.11316 1.25560 1.09525 0.73389 0.72897 0.77743 1.93325 1.84330 1.42407 1.80121 1.93443 1.53469 1.71760 1.78174 1.52530 1.42302 1.37715 1.30390 1.18547 0.88222 1.26161 1.08197 0.89848 1.26108 0.96021 0.96145 0.95742 1.69822 1.11687 1.25312 1.40579 0.87105 0.81242 0.82173 0.82081 1.19198 1.16400 1.18037 1.21900 1.02880 0.92320 0.89026 1.23244 0.97815 1.01830 0.96473 1.23327 0.96470 1.00982 1.01180 1.42814 1.03525 1.10850 1.54404 0.72315 0.87499 0.87453 0.88046 0.81256 0.90096 0.84817 0.88912 0.85889 0.85798 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.51 71.24 0.75 -0.35 16 2 C 0.24 7.21 8.15 138.13 1.13 8.33 16 3 N -0.53 -20.28 11.25 -188.12 -2.12 -22.39 16 4 C 0.07 2.90 11.64 83.52 0.97 3.87 16 5 C -0.58 -24.06 7.27 83.09 0.60 -23.45 16 6 S 2.56 121.81 4.59 -56.49 -0.26 121.55 16 7 O -1.01 -48.14 16.98 -128.00 -2.17 -50.31 16 8 O -0.98 -53.94 12.76 -128.00 -1.63 -55.58 16 9 N -0.81 -36.44 2.42 -322.94 -0.78 -37.22 16 10 C -0.26 -13.33 7.87 84.03 0.66 -12.67 16 11 H 0.08 4.36 8.05 -2.90 -0.02 4.34 16 12 C 0.08 4.08 4.53 84.86 0.38 4.47 16 13 N -0.84 -46.39 13.97 21.65 0.30 -46.09 16 14 Si 0.85 42.69 25.39 68.60 1.74 44.43 16 15 H -0.27 -14.49 6.32 99.48 0.63 -13.86 16 16 H -0.24 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 C 0.05 1.65 6.42 44.99 0.29 1.94 16 19 C -0.15 -4.77 9.85 30.59 0.30 -4.47 16 20 C -0.18 -5.25 10.25 30.59 0.31 -4.94 16 21 N -0.51 -16.46 6.15 -183.81 -1.13 -17.59 16 22 H 0.44 11.00 8.96 -92.70 -0.83 10.17 16 23 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.17 7.46 8.06 -2.91 -0.02 7.43 16 27 H 0.29 14.96 8.31 -92.71 -0.77 14.19 16 28 H 0.13 4.39 7.47 -2.39 -0.02 4.37 16 29 H 0.09 3.30 7.11 -2.39 -0.02 3.28 16 30 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -70.04 287.36 -0.41 -70.45 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.24 Total: 20.04 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 5.40 Total: -27.28 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -3.73 Total: -123.30 kcal Atomic # 8 Polarization: -102.08 SS G_CDS: -3.81 Total: -105.88 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.74 Total: 44.43 kcal Atomic # 16 Polarization: 121.81 SS G_CDS: -0.26 Total: 121.55 kcal Total: -70.04 -0.41 -70.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706817907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.522 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds