Wall clock time and date at job start Mon Mar 30 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.50696 * 109.47110 * 179.97438 * 4 3 2 6 6 N 1.33313 * 126.54932 * 269.68920 * 5 4 3 7 7 N 1.29005 * 107.35427 * 179.83880 * 6 5 4 8 8 N 1.28786 * 108.72212 * 0.42666 * 7 6 5 9 9 H 0.96997 * 125.44872 * 179.72709 * 8 7 6 10 10 N 1.28886 * 109.09960 * 359.73453 * 8 7 6 11 11 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 12 12 O 1.21281 * 120.00220 * 179.72597 * 11 2 1 13 13 C 1.50706 * 120.00080 * 359.72107 * 11 2 1 14 14 S 1.80989 * 109.47203 * 180.02562 * 13 11 2 15 15 C 1.76206 * 100.00010 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99621 * 359.97438 * 15 14 13 17 17 C 1.38794 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00193 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99992 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46975 * 89.99621 * 19 17 15 21 21 H 1.48497 * 109.47172 * 209.99845 * 19 17 15 22 22 H 1.48497 * 109.46742 * 329.99999 * 19 17 15 23 23 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 25 25 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 26 26 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 27 27 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 28 28 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 29 29 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 30 30 H 1.09004 * 109.46762 * 300.00389 * 13 11 2 31 31 H 1.08998 * 109.46924 * 59.99727 * 13 11 2 32 32 H 0.97004 * 119.99966 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 7 4.5310 3.1667 1.4485 7 7 4.7734 4.4338 1.4427 8 7 3.6531 5.0689 1.4425 9 1 3.5534 6.0338 1.4425 10 7 2.6855 4.2175 1.4425 11 6 2.1389 -1.1671 -0.0057 12 8 3.3517 -1.1672 -0.0107 13 6 1.3854 -2.4723 -0.0057 14 16 2.5615 -3.8480 -0.0133 15 6 1.4414 -5.2082 -0.0128 16 1 0.3761 -5.0304 -0.0083 17 6 1.9281 -6.5080 -0.0173 18 7 3.2265 -6.7246 -0.0224 19 14 0.7407 -7.9500 -0.0161 20 1 0.4210 -8.3292 -1.4159 21 1 1.3645 -9.1044 0.6793 22 1 -0.5074 -7.5628 0.6892 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 3.1499 1.1384 -0.5138 27 1 1.6084 2.0285 -0.5138 28 1 1.5001 1.8407 1.9564 29 1 3.0416 0.9507 1.9564 30 1 0.7624 -2.5322 0.8867 31 1 0.7550 -2.5278 -0.8932 32 1 3.5666 -7.6330 -0.0259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707518678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:41 Heat of formation + Delta-G solvation = 88.829307 kcal Electronic energy + Delta-G solvation = -17661.235995 eV Core-core repulsion = 14593.600376 eV Total energy + Delta-G solvation = -3067.635619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.68896 -39.50539 -35.94807 -34.59398 -33.91379 -32.41219 -31.22316 -28.80254 -26.75977 -25.50963 -24.79857 -24.26695 -21.95902 -19.41250 -19.21508 -17.67139 -17.31766 -16.63173 -16.05527 -15.52749 -14.84676 -14.78758 -14.17048 -13.84701 -13.67107 -13.31336 -12.91232 -12.71536 -12.55271 -12.33299 -12.29595 -11.87445 -11.49857 -11.35127 -11.07200 -11.04820 -11.00753 -10.74332 -10.61442 -9.79274 -9.37414 -9.05020 -8.60452 -8.20413 -6.48209 -6.19814 -3.90431 0.89438 1.85927 2.06826 2.90430 3.04853 3.23542 3.26250 3.31281 3.55766 3.80720 4.09926 4.21792 4.76193 4.92454 5.06419 5.11845 5.15059 5.15961 5.32550 5.42977 5.46116 5.58602 5.69625 5.82004 5.87838 5.95108 6.14632 6.17723 6.57882 7.49245 7.61163 8.01481 8.36755 8.54643 9.25373 10.87551 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.048450 B = 0.003280 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.780365 B = 8534.639229 C = 8952.054313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.625 5.625 3 C 0.126 3.874 4 C -0.042 4.042 5 C 0.185 3.815 6 N -0.266 5.266 7 N -0.054 5.054 8 N -0.234 5.234 9 H 0.473 0.527 10 N -0.303 5.303 11 C 0.531 3.469 12 O -0.508 6.508 13 C -0.150 4.150 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 22.204 2.073 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.361 5.361 3 C 0.001 3.999 4 C -0.084 4.084 5 C -0.099 4.099 6 N -0.139 5.139 7 N -0.049 5.049 8 N -0.080 5.080 9 H 0.326 0.674 10 N -0.155 5.155 11 C 0.319 3.681 12 O -0.382 6.382 13 C -0.301 4.301 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.102 22.381 2.072 22.848 hybrid contribution -2.729 -0.459 0.041 2.767 sum -6.830 21.922 2.113 23.058 Atomic orbital electron populations 1.21803 0.79392 1.03271 1.01942 1.47846 1.06919 1.05302 1.76060 1.21235 0.98845 0.85349 0.94438 1.20438 0.99563 0.88095 1.00304 1.25591 0.88966 0.94524 1.00770 1.76015 1.14619 1.06182 1.17062 1.79014 1.10848 1.00233 1.14814 1.47804 1.01370 1.12337 1.46453 0.67357 1.74704 1.18421 1.00148 1.22237 1.20417 0.88016 0.84562 0.75098 1.90726 1.13630 1.86684 1.47114 1.23562 1.04574 0.97150 1.04790 1.85437 1.07989 0.93331 1.96700 1.22855 0.94300 0.92217 1.58946 0.90943 1.24990 0.95655 0.98376 0.94570 1.70019 1.11732 1.21654 1.46826 0.86175 0.80270 0.80756 0.78331 1.20296 1.20774 1.19701 0.92616 0.90450 0.91253 0.89099 0.90441 0.88624 0.87538 0.89139 0.89220 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.24 59.85 0.61 1.36 16 2 N -0.62 -8.31 2.87 -181.57 -0.52 -8.83 16 3 C 0.13 1.48 5.39 -4.04 -0.02 1.46 16 4 C -0.04 -0.46 6.17 -27.89 -0.17 -0.63 16 5 C 0.18 2.14 7.62 -156.63 -1.19 0.94 16 6 N -0.27 -3.59 12.50 32.44 0.41 -3.18 16 7 N -0.05 -0.59 13.48 60.35 0.81 0.22 16 8 N -0.23 -1.78 7.91 60.34 0.48 -1.30 16 9 H 0.47 1.22 8.96 -340.52 -3.05 -1.83 16 10 N -0.30 -2.92 12.36 32.46 0.40 -2.52 16 11 C 0.53 9.81 7.69 -10.98 -0.08 9.73 16 12 O -0.51 -11.43 15.44 5.56 0.09 -11.34 16 13 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 15 C -0.53 -15.12 9.50 30.94 0.29 -14.83 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 19 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.74 6.45 -51.93 -0.33 0.40 16 25 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 26 H 0.09 1.29 7.41 -51.93 -0.38 0.90 16 27 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.11 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.09 1.64 7.41 -51.91 -0.38 1.25 16 31 H 0.09 1.65 8.10 -51.92 -0.42 1.23 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -36.44 301.07 -7.02 -43.46 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -6.23 Total: -5.24 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.49 Total: -2.80 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 2.31 Total: -41.02 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.44 -7.02 -43.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707518678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.290 kcal (2) G-P(sol) polarization free energy of solvation -36.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds