Wall clock time and date at job start Mon Mar 30 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.53000 * 109.46992 * 90.00137 * 3 2 1 5 5 C 1.50696 * 109.47110 * 179.97438 * 4 3 2 6 6 N 1.33313 * 126.54932 * 269.68920 * 5 4 3 7 7 N 1.29005 * 107.35427 * 179.83880 * 6 5 4 8 8 N 1.28786 * 108.72212 * 0.42666 * 7 6 5 9 9 H 0.96997 * 125.44872 * 179.72709 * 8 7 6 10 10 N 1.28886 * 109.09960 * 359.73453 * 8 7 6 11 11 C 1.34773 * 120.00036 * 180.28035 * 2 1 3 12 12 O 1.21281 * 120.00220 * 179.72597 * 11 2 1 13 13 C 1.50706 * 120.00080 * 359.72107 * 11 2 1 14 14 S 1.80989 * 109.47203 * 180.02562 * 13 11 2 15 15 C 1.76206 * 100.00010 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99621 * 359.97438 * 15 14 13 17 17 C 1.38794 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00193 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99992 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46975 * 89.99621 * 19 17 15 21 21 H 1.48497 * 109.47172 * 209.99845 * 19 17 15 22 22 H 1.48497 * 109.46742 * 329.99999 * 19 17 15 23 23 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 25 25 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 26 26 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 27 27 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 28 28 H 1.09000 * 109.47214 * 300.00285 * 4 3 2 29 29 H 1.09008 * 109.47142 * 59.99450 * 4 3 2 30 30 H 1.09004 * 109.46762 * 300.00389 * 13 11 2 31 31 H 1.08998 * 109.46924 * 59.99727 * 13 11 2 32 32 H 0.97004 * 119.99966 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.2065 3.0152 1.4425 6 7 4.5310 3.1667 1.4485 7 7 4.7734 4.4338 1.4427 8 7 3.6531 5.0689 1.4425 9 1 3.5534 6.0338 1.4425 10 7 2.6855 4.2175 1.4425 11 6 2.1389 -1.1671 -0.0057 12 8 3.3517 -1.1672 -0.0107 13 6 1.3854 -2.4723 -0.0057 14 16 2.5615 -3.8480 -0.0133 15 6 1.4414 -5.2082 -0.0128 16 1 0.3761 -5.0304 -0.0083 17 6 1.9281 -6.5080 -0.0173 18 7 3.2265 -6.7246 -0.0224 19 14 0.7407 -7.9500 -0.0161 20 1 0.4210 -8.3292 -1.4159 21 1 1.3645 -9.1044 0.6793 22 1 -0.5074 -7.5628 0.6892 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 3.1499 1.1384 -0.5138 27 1 1.6084 2.0285 -0.5138 28 1 1.5001 1.8407 1.9564 29 1 3.0416 0.9507 1.9564 30 1 0.7624 -2.5322 0.8867 31 1 0.7550 -2.5278 -0.8932 32 1 3.5666 -7.6330 -0.0259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707518678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:41 Heat of formation + Delta-G solvation = 60.958338 kcal Electronic energy + Delta-G solvation = -17662.444571 eV Core-core repulsion = 14593.600376 eV Total energy + Delta-G solvation = -3068.844195 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.50444 -40.83166 -37.12336 -35.50500 -34.80558 -34.55438 -32.28491 -30.16354 -27.66398 -27.63682 -25.65083 -25.31085 -22.85724 -20.63135 -20.15215 -19.50685 -18.21659 -17.93989 -17.21549 -16.85461 -16.78569 -15.98225 -15.64670 -15.11570 -14.74436 -14.46160 -14.35153 -14.06682 -13.56010 -13.40136 -13.20223 -13.14221 -13.05404 -12.86563 -12.58186 -12.35128 -12.21821 -11.96496 -11.68215 -11.44562 -11.11425 -10.86326 -10.21727 -9.71434 -8.63804 -8.31503 -6.09589 0.10151 0.95733 1.29091 1.44820 1.46099 1.51248 1.59557 1.63446 2.12708 2.30612 2.89647 3.02639 3.26390 3.31385 3.75350 4.01315 4.13120 4.21510 4.29793 4.40865 4.48713 4.54088 4.59965 4.77290 4.85484 4.99345 5.05013 5.44842 5.55813 5.65833 6.22746 6.29043 7.09708 7.18135 7.18697 8.77696 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.048450 B = 0.003280 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.780365 B = 8534.639229 C = 8952.054313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.609 5.609 3 C 0.129 3.871 4 C -0.034 4.034 5 C 0.176 3.824 6 N -0.311 5.311 7 N -0.064 5.064 8 N -0.202 5.202 9 H 0.493 0.507 10 N -0.291 5.291 11 C 0.529 3.471 12 O -0.561 6.561 13 C -0.123 4.123 14 S -0.158 6.158 15 C -0.543 4.543 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.256 1.256 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 23.727 2.189 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C 0.004 3.996 4 C -0.075 4.075 5 C -0.107 4.107 6 N -0.183 5.183 7 N -0.059 5.059 8 N -0.053 5.053 9 H 0.352 0.648 10 N -0.144 5.144 11 C 0.316 3.684 12 O -0.439 6.439 13 C -0.274 4.274 14 S 0.070 5.930 15 C -0.691 4.691 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.180 1.180 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.143 0.857 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.399 23.974 2.188 25.185 hybrid contribution -1.781 -0.684 0.003 1.908 sum -9.180 23.290 2.191 25.130 Atomic orbital electron populations 1.22176 0.76295 1.05228 1.03595 1.47795 1.08696 1.04119 1.73664 1.21327 0.98003 0.85075 0.95176 1.20321 1.00390 0.87285 0.99544 1.25615 0.88518 0.95220 1.01374 1.76005 1.16043 1.07402 1.18834 1.78955 1.11723 0.99797 1.15458 1.47877 1.00340 1.13281 1.43833 0.64788 1.74669 1.18374 0.99601 1.21761 1.20222 0.87305 0.85596 0.75227 1.90713 1.15762 1.87440 1.50014 1.23382 1.02638 0.94741 1.06626 1.85656 1.12843 0.97515 1.97031 1.23196 0.94656 0.92565 1.58659 0.89744 1.26142 0.97564 1.01756 0.93822 1.70195 1.14171 1.22405 1.48133 0.84948 0.77938 0.76296 0.78755 1.19374 1.20488 1.17983 0.91063 0.90408 0.87519 0.92232 0.86824 0.85660 0.90224 0.86988 0.87349 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.24 127.77 1.31 2.32 16 2 N -0.61 -14.97 2.87 -846.74 -2.43 -17.40 16 3 C 0.13 2.80 5.39 86.38 0.47 3.27 16 4 C -0.03 -0.69 6.17 29.85 0.18 -0.51 16 5 C 0.18 3.86 7.62 138.55 1.06 4.91 16 6 N -0.31 -8.38 12.50 -51.27 -0.64 -9.02 16 7 N -0.06 -1.36 13.48 37.02 0.50 -0.86 16 8 N -0.20 -2.65 7.91 37.00 0.29 -2.35 16 9 H 0.49 1.23 8.96 -347.67 -3.12 -1.88 16 10 N -0.29 -4.89 12.36 -51.21 -0.63 -5.52 16 11 C 0.53 19.48 7.69 87.66 0.67 20.15 16 12 O -0.56 -26.34 15.44 -3.03 -0.05 -26.39 16 13 C -0.12 -4.80 4.71 71.24 0.34 -4.46 16 14 S -0.16 -8.79 20.57 -56.49 -1.16 -9.95 16 15 C -0.54 -30.84 9.50 67.95 0.65 -30.19 16 16 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 17 C 0.01 0.67 5.49 84.86 0.47 1.13 16 18 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 19 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 1.19 6.45 -2.39 -0.02 1.17 16 25 H 0.11 0.85 8.07 -2.38 -0.02 0.83 16 26 H 0.06 1.72 7.41 -2.39 -0.02 1.70 16 27 H 0.11 1.69 8.07 -2.39 -0.02 1.67 16 28 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.09 8.14 -2.38 -0.02 2.08 16 30 H 0.11 3.87 7.41 -2.39 -0.02 3.86 16 31 H 0.11 3.81 8.10 -2.40 -0.02 3.79 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -83.27 301.07 1.37 -81.90 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -1.96 Total: 3.63 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.14 Total: -3.38 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -2.63 Total: -91.26 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.16 Total: -9.95 kcal Total: -83.27 1.37 -81.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707518678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.858 kcal (2) G-P(sol) polarization free energy of solvation -83.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds