Wall clock time and date at job start Mon Mar 30 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47223 * 269.99904 * 3 2 1 5 5 H 1.48505 * 109.47235 * 29.99561 * 3 2 1 6 6 H 1.48504 * 109.47335 * 149.99358 * 3 2 1 7 7 C 1.38796 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00138 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99823 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46829 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00292 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 N 1.33309 * 126.54982 * 269.68790 * 17 16 15 19 19 N 1.29002 * 107.35464 * 179.83401 * 18 17 16 20 20 N 1.28786 * 108.72526 * 0.43219 * 19 18 17 21 21 H 0.96997 * 125.44735 * 179.72062 * 20 19 18 22 22 N 1.28884 * 109.09854 * 359.72584 * 20 19 18 23 23 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47247 * 60.00315 * 10 9 7 25 25 H 1.08992 * 109.47234 * 299.99341 * 10 9 7 26 26 H 0.97004 * 120.00228 * 0.02562 * 13 11 10 27 27 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 28 28 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 30 30 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 31 31 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 32 32 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0030 13 7 2.8442 -6.3431 0.0037 14 6 2.3305 -7.7151 0.0040 15 6 3.5025 -8.6985 0.0054 16 6 2.9659 -10.1314 0.0051 17 6 4.1204 -11.1000 0.0059 18 7 4.7256 -11.6148 -1.0646 19 7 5.6623 -12.3934 -0.6398 20 7 5.6534 -12.3866 0.6480 21 1 6.2547 -12.8916 1.2174 22 7 4.7175 -11.6016 1.0591 23 1 -0.4850 0.8400 -0.0004 24 1 3.1238 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8874 26 1 3.8010 -6.1835 0.0040 27 1 1.7222 -7.8755 -0.8862 28 1 1.7215 -7.8748 0.8937 29 1 4.1104 -8.5380 0.8958 30 1 4.1118 -8.5389 -0.8841 31 1 2.3564 -10.2913 0.8944 32 1 2.3583 -10.2916 -0.8855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708287741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:51 Heat of formation + Delta-G solvation = 72.004599 kcal Electronic energy + Delta-G solvation = -16951.924809 eV Core-core repulsion = 13883.559616 eV Total energy + Delta-G solvation = -3068.365193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.85942 -39.17289 -36.35622 -34.64074 -34.01564 -32.41794 -31.97096 -29.43015 -26.72169 -25.44767 -24.92671 -22.98447 -21.74810 -20.31025 -19.51976 -17.84216 -17.43596 -16.23413 -16.19838 -15.92031 -14.97499 -14.79357 -14.56722 -14.21161 -13.87538 -13.12860 -13.08114 -13.01741 -12.53293 -12.45577 -11.86358 -11.74035 -11.67191 -11.44922 -11.12472 -11.05158 -11.01303 -10.77432 -10.68885 -9.80492 -9.39456 -9.05990 -8.87673 -8.22292 -6.48660 -6.20572 -3.91003 0.73649 1.68731 1.92094 3.03676 3.11813 3.23278 3.28386 3.32040 3.47412 3.76827 3.91006 4.21546 4.62152 4.69481 4.76415 5.07602 5.14536 5.16687 5.23467 5.34047 5.35033 5.54772 5.66601 5.82712 5.92489 5.95237 6.01920 6.15751 6.62045 7.60685 7.71467 7.83400 8.36365 8.62771 9.24744 10.86857 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056421 B = 0.002487 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.153636 B =11257.981790 C =11574.822488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.740 5.740 14 C 0.123 3.877 15 C -0.126 4.126 16 C -0.022 4.022 17 C 0.179 3.821 18 N -0.274 5.274 19 N -0.053 5.053 20 N -0.232 5.232 21 H 0.474 0.526 22 N -0.299 5.299 23 H 0.268 0.732 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.398 0.602 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 -23.076 2.097 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.165 4.165 16 C -0.062 4.062 17 C -0.104 4.104 18 N -0.147 5.147 19 N -0.049 5.049 20 N -0.078 5.078 21 H 0.328 0.672 22 N -0.151 5.151 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.232 0.768 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.188 -23.670 1.810 25.833 hybrid contribution 2.616 1.221 0.602 2.949 sum 12.803 -22.450 2.413 25.956 Atomic orbital electron populations 1.70020 1.05941 1.27441 1.46886 1.24996 0.95037 0.99035 0.94566 0.86165 0.79392 0.81570 0.78343 1.20272 1.20764 1.19721 1.22868 0.94905 0.91667 1.58900 0.90937 1.85395 1.04968 0.96327 1.96715 1.23531 1.06555 0.95410 1.04931 1.20302 0.86518 0.86278 0.75135 1.90705 1.15346 1.85614 1.47469 1.45973 1.09972 1.05474 1.78047 1.21210 0.95501 0.80605 1.02861 1.21751 0.98654 0.92421 1.03676 1.19913 0.90844 0.89654 1.05836 1.25740 1.00436 1.00225 0.83968 1.75926 1.04180 1.08292 1.26322 1.78984 1.16049 1.15891 0.93952 1.47822 1.23647 1.30352 1.05940 0.67209 1.74750 1.03633 1.08908 1.27799 0.92190 0.89237 0.89201 0.76826 0.91138 0.91244 0.90746 0.90502 0.88127 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.77 7.85 -10.98 -0.09 9.69 16 12 O -0.52 -11.62 15.86 5.55 0.09 -11.53 16 13 N -0.74 -9.45 5.56 -60.29 -0.33 -9.79 16 14 C 0.12 1.27 5.67 -4.04 -0.02 1.25 16 15 C -0.13 -0.93 5.31 -26.73 -0.14 -1.07 16 16 C -0.02 -0.14 5.84 -27.88 -0.16 -0.31 16 17 C 0.18 1.55 7.62 -156.63 -1.19 0.36 16 18 N -0.27 -2.79 12.50 32.45 0.41 -2.39 16 19 N -0.05 -0.47 13.48 60.35 0.81 0.35 16 20 N -0.23 -1.38 7.91 60.34 0.48 -0.90 16 21 H 0.47 0.61 8.96 -340.52 -3.05 -2.44 16 22 N -0.30 -2.39 12.36 32.47 0.40 -1.98 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 25 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 26 H 0.40 3.94 8.47 -40.82 -0.35 3.60 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -37.02 304.47 -7.57 -44.60 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -6.32 Total: -4.12 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.19 Total: -5.91 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 2.50 Total: -40.16 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.02 -7.57 -44.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708287741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.604 kcal (2) G-P(sol) polarization free energy of solvation -37.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds