Wall clock time and date at job start Mon Mar 30 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47223 * 269.99904 * 3 2 1 5 5 H 1.48505 * 109.47235 * 29.99561 * 3 2 1 6 6 H 1.48504 * 109.47335 * 149.99358 * 3 2 1 7 7 C 1.38796 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00138 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99823 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46829 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00292 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 N 1.33309 * 126.54982 * 269.68790 * 17 16 15 19 19 N 1.29002 * 107.35464 * 179.83401 * 18 17 16 20 20 N 1.28786 * 108.72526 * 0.43219 * 19 18 17 21 21 H 0.96997 * 125.44735 * 179.72062 * 20 19 18 22 22 N 1.28884 * 109.09854 * 359.72584 * 20 19 18 23 23 H 0.96999 * 119.99948 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47247 * 60.00315 * 10 9 7 25 25 H 1.08992 * 109.47234 * 299.99341 * 10 9 7 26 26 H 0.97004 * 120.00228 * 0.02562 * 13 11 10 27 27 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 28 28 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 29 29 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 30 30 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 31 31 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 32 32 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0030 13 7 2.8442 -6.3431 0.0037 14 6 2.3305 -7.7151 0.0040 15 6 3.5025 -8.6985 0.0054 16 6 2.9659 -10.1314 0.0051 17 6 4.1204 -11.1000 0.0059 18 7 4.7256 -11.6148 -1.0646 19 7 5.6623 -12.3934 -0.6398 20 7 5.6534 -12.3866 0.6480 21 1 6.2547 -12.8916 1.2174 22 7 4.7175 -11.6016 1.0591 23 1 -0.4850 0.8400 -0.0004 24 1 3.1238 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8874 26 1 3.8010 -6.1835 0.0040 27 1 1.7222 -7.8755 -0.8862 28 1 1.7215 -7.8748 0.8937 29 1 4.1104 -8.5380 0.8958 30 1 4.1118 -8.5389 -0.8841 31 1 2.3564 -10.2913 0.8944 32 1 2.3583 -10.2916 -0.8855 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708287741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:51 Heat of formation + Delta-G solvation = 42.715676 kcal Electronic energy + Delta-G solvation = -16953.194872 eV Core-core repulsion = 13883.559616 eV Total energy + Delta-G solvation = -3069.635256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.45893 -40.55821 -37.20112 -35.41772 -34.81751 -34.56647 -32.86269 -30.80385 -27.83956 -27.38570 -25.54687 -23.74765 -22.43393 -21.63849 -20.09009 -19.79650 -18.09517 -17.67750 -17.31245 -16.87911 -16.86308 -16.04884 -15.84079 -15.37430 -14.92980 -14.60593 -14.33637 -13.94976 -13.69662 -13.35810 -13.14808 -13.01030 -12.87072 -12.60690 -12.45884 -12.30177 -12.11250 -11.76745 -11.71525 -11.33419 -11.12819 -10.89846 -10.25395 -10.05682 -8.64549 -8.33129 -6.10897 0.14310 1.03862 1.29477 1.43697 1.48679 1.52652 1.59888 1.66003 2.27996 2.34425 2.91299 3.00908 3.32936 3.34688 3.90135 4.04202 4.07621 4.19671 4.33750 4.49723 4.54715 4.57015 4.69298 4.71329 4.92614 5.16873 5.21777 5.43485 5.49970 5.66253 6.21467 6.54982 7.08204 7.22376 7.29127 8.76064 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056421 B = 0.002487 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.153636 B =11257.981790 C =11574.822488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.565 6.565 13 N -0.714 5.714 14 C 0.121 3.879 15 C -0.109 4.109 16 C -0.020 4.020 17 C 0.174 3.826 18 N -0.304 5.304 19 N -0.066 5.066 20 N -0.207 5.207 21 H 0.491 0.509 22 N -0.305 5.305 23 H 0.271 0.729 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.416 0.584 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 -23.559 2.502 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.368 5.368 14 C -0.003 4.003 15 C -0.149 4.149 16 C -0.061 4.061 17 C -0.109 4.109 18 N -0.176 5.176 19 N -0.061 5.061 20 N -0.058 5.058 21 H 0.349 0.651 22 N -0.157 5.157 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.253 0.747 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.614 -24.208 2.217 27.387 hybrid contribution 1.962 1.191 0.515 2.353 sum 14.576 -23.017 2.732 27.380 Atomic orbital electron populations 1.70185 1.07954 1.28585 1.48045 1.26136 0.95985 1.03343 0.93802 0.84948 0.78186 0.76031 0.78771 1.19339 1.20330 1.18205 1.23205 0.95341 0.92033 1.58772 0.89922 1.85569 1.10683 0.99257 1.97047 1.23382 1.03489 0.94507 1.06794 1.20028 0.86253 0.86669 0.75202 1.90695 1.17372 1.86110 1.50196 1.45741 1.10306 1.05309 1.75476 1.21367 0.96765 0.79507 1.02624 1.21586 0.97250 0.91861 1.04160 1.19959 0.90506 0.88718 1.06901 1.25982 1.00725 1.00487 0.83717 1.75910 1.05054 1.09300 1.27375 1.78929 1.16128 1.16128 0.94906 1.47883 1.23011 1.29336 1.05551 0.65053 1.74732 1.04010 1.09225 1.27768 0.92010 0.87214 0.87240 0.74746 0.91579 0.91428 0.89987 0.90260 0.86858 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.02 13.22 21.65 0.29 -55.74 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.54 29.55 68.60 2.03 45.56 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.10 7.85 87.66 0.69 19.79 16 12 O -0.57 -25.67 15.86 -3.05 -0.05 -25.72 16 13 N -0.71 -16.71 5.56 -463.06 -2.57 -19.28 16 14 C 0.12 2.28 5.67 86.38 0.49 2.77 16 15 C -0.11 -1.34 5.31 30.59 0.16 -1.18 16 16 C -0.02 -0.23 5.84 29.85 0.17 -0.05 16 17 C 0.17 2.69 7.62 138.55 1.06 3.75 16 18 N -0.30 -5.80 12.50 -51.26 -0.64 -6.44 16 19 N -0.07 -1.06 13.48 37.02 0.50 -0.56 16 20 N -0.21 -2.08 7.91 37.00 0.29 -1.79 16 21 H 0.49 0.28 8.96 -347.67 -3.12 -2.83 16 22 N -0.30 -4.24 12.36 -51.20 -0.63 -4.87 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 24 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 25 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 26 H 0.42 6.93 8.47 -92.71 -0.79 6.14 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -81.65 304.47 -0.56 -82.21 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -2.73 Total: 5.13 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.12 Total: -8.88 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -2.77 Total: -88.68 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -81.65 -0.56 -82.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708287741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.923 kcal (2) G-P(sol) polarization free energy of solvation -81.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds