Wall clock time and date at job start Mon Mar 30 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47372 * 2 1 4 4 C 1.46505 * 119.99818 * 274.99913 * 3 2 1 5 5 C 1.50689 * 109.47081 * 274.99988 * 4 3 2 6 6 H 1.07996 * 120.00576 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00129 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46837 * 89.99997 * 9 7 5 11 11 H 1.48499 * 109.46974 * 209.99378 * 9 7 5 12 12 H 1.48491 * 109.47282 * 329.99970 * 9 7 5 13 13 S 1.65598 * 120.00287 * 94.99805 * 3 2 1 14 14 O 1.42095 * 106.40318 * 156.46300 * 13 3 2 15 15 O 1.42097 * 106.39954 * 23.54040 * 13 3 2 16 16 C 1.76205 * 107.21511 * 270.00183 * 13 3 2 17 17 C 1.38615 * 120.07182 * 150.26169 * 16 13 3 18 18 C 1.38880 * 117.96717 * 180.28771 * 17 16 13 19 19 C 1.38611 * 117.96736 * 359.45738 * 18 17 16 20 20 N 1.31938 * 119.84568 * 0.28403 * 19 18 17 21 21 N 1.28349 * 122.18457 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47151 * 300.00467 * 1 2 3 24 24 H 1.08994 * 109.47166 * 60.00060 * 1 2 3 25 25 H 1.08997 * 109.47521 * 239.99758 * 2 1 3 26 26 H 1.09001 * 109.46940 * 119.99608 * 2 1 3 27 27 H 1.09006 * 109.46753 * 34.99888 * 4 3 2 28 28 H 1.09000 * 109.47220 * 154.99764 * 4 3 2 29 29 H 0.97000 * 119.99654 * 180.02562 * 8 7 5 30 30 H 1.08005 * 121.02224 * 0.02562 * 17 16 13 31 31 H 1.08002 * 121.02028 * 179.74070 * 18 17 16 32 32 H 1.08000 * 120.08030 * 180.29881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2640 5 6 3.4947 1.7887 -1.8823 6 1 4.1724 1.1117 -1.3836 7 6 3.8530 2.3613 -3.0844 8 7 3.0281 3.1862 -3.6916 9 14 5.5100 1.9652 -3.8506 10 1 5.3748 0.7823 -4.7381 11 1 5.9788 3.1290 -4.6450 12 1 6.4933 1.6695 -2.7779 13 16 2.4122 2.1203 1.4286 14 8 3.3284 3.1571 1.1049 15 8 2.7095 1.0800 2.3498 16 6 0.9554 2.9119 2.0252 17 6 0.7600 3.0712 3.3882 18 6 -0.4064 3.6958 3.8104 19 6 -1.2974 4.1315 2.8422 20 7 -1.0246 3.9412 1.5654 21 7 0.0509 3.3594 1.1755 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3618 1.8096 -1.9453 28 1 2.0923 3.1803 -1.0757 29 1 3.2799 3.5887 -4.5374 30 1 1.4904 2.7165 4.1004 31 1 -0.6107 3.8417 4.8608 32 1 -2.2128 4.6259 3.1322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712797743.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:21 Heat of formation + Delta-G solvation = -37.040791 kcal Electronic energy + Delta-G solvation = -19243.942760 eV Core-core repulsion = 16138.556253 eV Total energy + Delta-G solvation = -3105.386507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.08653 -38.43042 -37.74794 -37.07711 -34.70756 -34.40731 -33.85632 -31.57197 -28.54633 -26.18668 -25.90044 -24.94017 -23.27302 -20.55165 -19.36682 -18.76941 -18.35205 -18.06746 -17.76074 -17.36007 -16.51184 -16.04702 -15.60106 -15.38176 -14.82857 -14.65677 -14.36660 -13.88525 -13.65245 -13.53260 -13.40262 -13.31292 -13.13188 -12.73982 -12.69909 -12.27610 -12.15589 -11.85012 -11.73543 -11.66740 -11.59229 -11.39923 -11.02842 -10.55576 -9.83320 -8.15799 -6.28680 -0.78903 -0.64717 -0.36620 1.42084 1.44795 1.55319 1.73072 2.21742 2.43648 2.50758 3.01734 3.15030 3.40771 3.50987 3.56069 3.72242 3.91946 3.96712 4.40145 4.43731 4.54644 4.62591 4.63873 4.97967 5.04817 5.14370 5.24168 5.38510 5.51052 5.74360 5.91956 6.13074 6.80499 7.32601 7.39888 8.92315 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.006391 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.633078 B = 4380.335815 C = 4478.077348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 N -0.973 5.973 4 C 0.280 3.720 5 C -0.549 4.549 6 H 0.060 0.940 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.961 3.039 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.270 1.270 13 S 2.706 3.294 14 O -0.976 6.976 15 O -0.963 6.963 16 C -0.513 4.513 17 C -0.062 4.062 18 C -0.101 4.101 19 C 0.077 3.923 20 N -0.289 5.289 21 N -0.179 5.179 22 H 0.093 0.907 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.027 0.973 28 H 0.013 0.987 29 H 0.266 0.734 30 H 0.188 0.812 31 H 0.220 0.780 32 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 -2.430 16.693 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.813 5.813 4 C 0.157 3.843 5 C -0.588 4.588 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.195 1.195 13 S 2.791 3.209 14 O -0.966 6.966 15 O -0.952 6.952 16 C -0.741 4.741 17 C -0.091 4.091 18 C -0.130 4.130 19 C -0.085 4.085 20 N -0.133 5.133 21 N -0.024 5.024 22 H 0.112 0.888 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.205 0.795 31 H 0.237 0.763 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.093 -2.123 15.361 17.976 hybrid contribution 0.495 0.283 0.592 0.822 sum -8.597 -1.841 15.953 18.215 Atomic orbital electron populations 1.22132 0.95376 1.03124 1.01250 1.21510 0.94767 0.80898 1.04557 1.57091 1.81153 1.22312 1.20764 1.18568 0.95890 0.90227 0.79651 1.21868 1.03087 1.27776 1.06058 0.92213 1.25819 1.01075 0.94643 0.97479 1.70060 1.37969 1.31034 1.17585 0.85510 0.79378 0.78129 0.78412 1.18961 1.20663 1.19486 1.01714 0.73513 0.73098 0.72582 1.93592 1.60092 1.59317 1.83599 1.93525 1.83065 1.55327 1.63291 1.35261 1.21196 1.14572 1.03026 1.22587 0.99862 0.93142 0.93470 1.23140 0.91650 0.93422 1.04820 1.25457 1.01312 0.92420 0.89320 1.73033 1.10971 1.10131 1.19178 1.73280 0.96772 1.01362 1.30993 0.88788 0.94098 0.93260 0.89351 0.88603 0.95523 0.96948 0.92462 0.79463 0.76337 0.75599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 10.24 71.98 0.74 -4.07 16 2 C 0.11 3.77 6.40 86.38 0.55 4.32 16 3 N -0.97 -42.50 2.72 -519.85 -1.42 -43.92 16 4 C 0.28 15.03 5.10 85.63 0.44 15.47 16 5 C -0.55 -31.79 9.38 25.60 0.24 -31.55 16 6 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 7 C 0.01 0.53 5.46 84.66 0.46 0.99 16 8 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 9 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 S 2.71 111.09 5.63 -56.49 -0.32 110.77 16 14 O -0.98 -48.96 16.99 -128.00 -2.17 -51.13 16 15 O -0.96 -36.91 16.28 -128.00 -2.08 -39.00 16 16 C -0.51 -17.53 6.85 84.77 0.58 -16.95 16 17 C -0.06 -1.42 9.70 22.51 0.22 -1.20 16 18 C -0.10 -1.45 10.21 22.51 0.23 -1.22 16 19 C 0.08 1.39 11.31 84.77 0.96 2.35 16 20 N -0.29 -9.03 11.50 -57.25 -0.66 -9.69 16 21 N -0.18 -6.74 11.40 -55.21 -0.63 -7.37 16 22 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 3.12 8.11 -2.39 -0.02 3.10 16 26 H 0.10 2.98 6.91 -2.39 -0.02 2.96 16 27 H 0.03 1.47 8.11 -2.38 -0.02 1.46 16 28 H 0.01 0.74 7.61 -2.39 -0.02 0.72 16 29 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.19 3.15 8.01 -2.91 -0.02 3.12 16 31 H 0.22 0.50 8.06 -2.91 -0.02 0.47 16 32 H 0.23 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -80.51 298.73 0.57 -79.93 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.13 Total: 1.08 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 4.42 Total: -31.86 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -2.42 Total: -117.20 kcal Atomic # 8 Polarization: -85.87 SS G_CDS: -4.26 Total: -90.13 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 111.09 SS G_CDS: -0.32 Total: 110.77 kcal Total: -80.51 0.57 -79.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712797743.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.893 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds