Wall clock time and date at job start Mon Mar 30 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00546 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00354 * 3 2 1 5 5 H 1.48502 * 109.47139 * 29.99854 * 3 2 1 6 6 H 1.48502 * 109.47455 * 149.99694 * 3 2 1 7 7 C 1.37879 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00133 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40033 * 66.46083 * 9 7 2 11 11 O 1.42097 * 106.40240 * 293.54112 * 9 7 2 12 12 N 1.65597 * 107.21772 * 179.97438 * 9 7 2 13 13 C 1.46502 * 119.99721 * 65.00250 * 12 9 7 14 14 C 1.50702 * 109.47109 * 164.99710 * 13 12 9 15 15 C 1.34564 * 126.58406 * 95.02397 * 14 13 12 16 16 N 1.34005 * 108.03308 * 179.77327 * 15 14 13 17 17 C 1.30912 * 109.30162 * 0.09870 * 16 15 14 18 18 N 1.34814 * 108.60788 * 359.80826 * 17 16 15 19 19 C 1.47010 * 111.17740 * 180.29258 * 18 17 16 20 20 C 1.54389 * 105.52637 * 342.86364 * 19 18 17 21 21 C 1.51562 * 141.44570 * 179.77947 * 17 16 15 22 22 H 0.97002 * 119.99275 * 0.02562 * 1 2 3 23 23 H 0.96991 * 120.00265 * 244.99758 * 12 9 7 24 24 H 1.09003 * 109.47109 * 45.00162 * 13 12 9 25 25 H 1.09000 * 109.47353 * 284.99784 * 13 12 9 26 26 H 1.08001 * 125.98226 * 359.79776 * 15 14 13 27 27 H 1.08997 * 110.23147 * 223.85015 * 19 18 17 28 28 H 1.08998 * 110.23536 * 101.87987 * 19 18 17 29 29 H 1.09000 * 110.96733 * 267.60540 * 20 19 18 30 30 H 1.09006 * 110.99713 * 143.86294 * 20 19 18 31 31 H 1.09002 * 110.47688 * 315.24669 * 21 17 16 32 32 H 1.09002 * 110.47368 * 77.72549 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2495 11 8 0.4507 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 3.1391 -4.1089 1.1505 14 6 3.7943 -5.4641 1.0783 15 6 5.0019 -5.7442 0.5547 16 7 5.2176 -7.0599 0.6898 17 6 4.1851 -7.6095 1.2777 18 7 3.2768 -6.6482 1.5392 19 6 2.0921 -7.2047 2.2085 20 6 2.1552 -8.7275 1.9617 21 6 3.6707 -8.9514 1.7591 22 1 -0.4849 0.8401 -0.0004 23 1 2.3169 -4.5326 -0.7607 24 1 2.5619 -4.0331 2.0720 25 1 3.9052 -3.3337 1.1367 26 1 5.6788 -5.0331 0.1047 27 1 1.1832 -6.7896 1.7730 28 1 2.1291 -6.9941 3.2773 29 1 1.5973 -9.0009 1.0661 30 1 1.7918 -9.2791 2.8289 31 1 3.8454 -9.7194 1.0055 32 1 4.1468 -9.2269 2.7002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719384416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:05 Heat of formation + Delta-G solvation = -24.879466 kcal Electronic energy + Delta-G solvation = -18704.575229 eV Core-core repulsion = 15599.716076 eV Total energy + Delta-G solvation = -3104.859153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.40338 -36.53495 -35.32406 -34.67455 -34.00482 -33.10168 -31.59890 -28.85426 -27.56948 -26.15957 -24.57806 -22.25902 -20.53312 -19.71044 -19.02586 -17.53451 -16.81195 -16.38414 -15.94703 -14.98328 -14.74972 -14.39207 -14.30016 -13.94864 -13.88052 -13.45871 -13.31207 -12.85149 -12.50217 -12.19123 -12.01223 -11.80693 -11.34602 -11.27050 -11.22502 -10.61959 -10.57404 -10.34945 -10.25673 -9.79935 -9.48405 -9.26873 -9.09712 -8.57643 -8.16773 -6.72798 -5.35079 1.92380 2.41089 2.76212 3.06197 3.12764 3.17800 3.21742 3.78536 4.05385 4.25211 4.48878 4.57145 4.62065 4.76720 4.92739 5.18791 5.26107 5.36205 5.42017 5.45218 5.63810 5.67903 5.74631 5.88726 5.96099 6.40056 6.54040 6.75253 6.92393 7.09914 7.29745 7.82220 7.94835 8.17249 8.86552 10.21485 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.005072 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.598926 B = 5518.648422 C = 5975.260876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.020 5.020 8 H 0.104 0.896 9 S 2.714 3.286 10 O -1.005 7.005 11 O -1.008 7.008 12 N -1.135 6.135 13 C 0.201 3.799 14 C -0.004 4.004 15 C -0.008 4.008 16 N -0.483 5.483 17 C 0.178 3.822 18 N -0.468 5.468 19 C 0.096 3.904 20 C -0.129 4.129 21 C -0.038 4.038 22 H 0.291 0.709 23 H 0.404 0.596 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.177 0.823 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 -13.659 5.113 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.154 5.154 8 H 0.122 0.878 9 S 2.814 3.186 10 O -0.995 6.995 11 O -0.998 6.998 12 N -0.890 5.890 13 C 0.074 3.926 14 C -0.119 4.119 15 C -0.157 4.157 16 N -0.202 5.202 17 C -0.085 4.085 18 N -0.152 5.152 19 C -0.026 4.026 20 C -0.167 4.167 21 C -0.077 4.077 22 H 0.101 0.899 23 H 0.234 0.766 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.194 0.806 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.219 -13.865 5.118 15.673 hybrid contribution 0.316 1.548 -0.114 1.584 sum 5.535 -12.316 5.003 14.400 Atomic orbital electron populations 1.69897 1.06818 1.30769 1.40061 1.24756 0.94472 1.00888 0.88433 0.86144 0.80153 0.79940 0.79219 1.19166 1.20000 1.18587 1.30530 1.06175 1.11712 1.66954 0.87795 1.00438 0.72072 0.73267 0.72826 1.93380 1.73057 1.87587 1.45516 1.93350 1.72877 1.87554 1.46046 1.56116 1.55482 1.51251 1.26123 1.19388 0.93366 0.89884 0.90004 1.21168 0.96648 0.87550 1.06574 1.22156 0.95774 0.92296 1.05490 1.69863 1.24400 1.07533 1.18438 1.24264 0.88463 0.92682 1.03083 1.46304 1.17246 1.07822 1.43874 1.22441 0.87631 0.94057 0.98424 1.22742 0.95994 0.93749 1.04248 1.20608 0.93995 0.90808 1.02286 0.89868 0.76552 0.90211 0.89511 0.80551 0.88656 0.89034 0.89396 0.88088 0.88664 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.67 13.19 55.43 0.73 -23.94 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -1.02 -27.59 9.72 30.60 0.30 -27.29 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.71 70.71 5.02 -107.50 -0.54 70.17 16 10 O -1.01 -29.31 18.02 -57.17 -1.03 -30.35 16 11 O -1.01 -28.66 17.49 -57.17 -1.00 -29.66 16 12 N -1.13 -22.46 5.99 -11.65 -0.07 -22.53 16 13 C 0.20 3.47 6.77 -5.19 -0.04 3.44 16 14 C 0.00 -0.07 6.64 -81.49 -0.54 -0.61 16 15 C -0.01 -0.12 11.78 -17.90 -0.21 -0.33 16 16 N -0.48 -7.81 11.26 -10.56 -0.12 -7.93 16 17 C 0.18 2.45 8.58 -154.86 -1.33 1.12 16 18 N -0.47 -6.63 3.61 -107.74 -0.39 -7.01 16 19 C 0.10 1.00 7.78 -3.04 -0.02 0.98 16 20 C -0.13 -0.90 7.17 -25.20 -0.18 -1.08 16 21 C -0.04 -0.32 6.86 -26.66 -0.18 -0.50 16 22 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.40 7.32 8.64 -34.47 -0.30 7.02 16 24 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 293.77 15.07 4.43 4.43 Total: -1.00 -37.16 293.77 -8.94 -46.10 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.63 Total: 6.11 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.30 Total: -20.72 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.15 Total: -61.42 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -2.03 Total: -60.01 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 70.71 SS G_CDS: -0.54 Total: 70.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -37.16 -8.94 -46.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719384416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.220 kcal (2) G-P(sol) polarization free energy of solvation -37.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds