Wall clock time and date at job start Mon Mar 30 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00546 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00354 * 3 2 1 5 5 H 1.48502 * 109.47139 * 29.99854 * 3 2 1 6 6 H 1.48502 * 109.47455 * 149.99694 * 3 2 1 7 7 C 1.37879 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00133 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40033 * 66.46083 * 9 7 2 11 11 O 1.42097 * 106.40240 * 293.54112 * 9 7 2 12 12 N 1.65597 * 107.21772 * 179.97438 * 9 7 2 13 13 C 1.46502 * 119.99721 * 65.00250 * 12 9 7 14 14 C 1.50702 * 109.47109 * 164.99710 * 13 12 9 15 15 C 1.34564 * 126.58406 * 95.02397 * 14 13 12 16 16 N 1.34005 * 108.03308 * 179.77327 * 15 14 13 17 17 C 1.30912 * 109.30162 * 0.09870 * 16 15 14 18 18 N 1.34814 * 108.60788 * 359.80826 * 17 16 15 19 19 C 1.47010 * 111.17740 * 180.29258 * 18 17 16 20 20 C 1.54389 * 105.52637 * 342.86364 * 19 18 17 21 21 C 1.51562 * 141.44570 * 179.77947 * 17 16 15 22 22 H 0.97002 * 119.99275 * 0.02562 * 1 2 3 23 23 H 0.96991 * 120.00265 * 244.99758 * 12 9 7 24 24 H 1.09003 * 109.47109 * 45.00162 * 13 12 9 25 25 H 1.09000 * 109.47353 * 284.99784 * 13 12 9 26 26 H 1.08001 * 125.98226 * 359.79776 * 15 14 13 27 27 H 1.08997 * 110.23147 * 223.85015 * 19 18 17 28 28 H 1.08998 * 110.23536 * 101.87987 * 19 18 17 29 29 H 1.09000 * 110.96733 * 267.60540 * 20 19 18 30 30 H 1.09006 * 110.99713 * 143.86294 * 20 19 18 31 31 H 1.09002 * 110.47688 * 315.24669 * 21 17 16 32 32 H 1.09002 * 110.47368 * 77.72549 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2495 11 8 0.4507 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 3.1391 -4.1089 1.1505 14 6 3.7943 -5.4641 1.0783 15 6 5.0019 -5.7442 0.5547 16 7 5.2176 -7.0599 0.6898 17 6 4.1851 -7.6095 1.2777 18 7 3.2768 -6.6482 1.5392 19 6 2.0921 -7.2047 2.2085 20 6 2.1552 -8.7275 1.9617 21 6 3.6707 -8.9514 1.7591 22 1 -0.4849 0.8401 -0.0004 23 1 2.3169 -4.5326 -0.7607 24 1 2.5619 -4.0331 2.0720 25 1 3.9052 -3.3337 1.1367 26 1 5.6788 -5.0331 0.1047 27 1 1.1832 -6.7896 1.7730 28 1 2.1291 -6.9941 3.2773 29 1 1.5973 -9.0009 1.0661 30 1 1.7918 -9.2791 2.8289 31 1 3.8454 -9.7194 1.0055 32 1 4.1468 -9.2269 2.7002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719384416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:05 Heat of formation + Delta-G solvation = -54.295531 kcal Electronic energy + Delta-G solvation = -18705.850805 eV Core-core repulsion = 15599.716076 eV Total energy + Delta-G solvation = -3106.134729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.45842 -37.54236 -37.36993 -36.23399 -36.15984 -35.17268 -32.64113 -29.98121 -28.49285 -28.27058 -25.87241 -23.06342 -21.56933 -21.10303 -20.71528 -19.42380 -18.38408 -17.64117 -17.50258 -16.84099 -16.19423 -16.00743 -15.42666 -15.31356 -15.22364 -14.73164 -14.26234 -14.10622 -13.96645 -13.67268 -13.28771 -13.09135 -13.01314 -12.57430 -12.53173 -12.48547 -12.47570 -12.29261 -11.94204 -11.25258 -11.11202 -10.92707 -10.55725 -10.33025 -9.31055 -8.76723 -7.49944 0.22229 1.00018 1.35755 1.36358 1.52348 1.79403 2.05710 2.21879 2.57638 2.94607 2.99420 3.43804 3.64481 3.70750 3.85419 3.95271 4.14281 4.38829 4.47017 4.50751 4.55957 4.60354 4.72350 4.89144 4.98307 4.99711 5.12776 5.28324 5.40385 5.81017 5.89158 6.07872 6.21905 6.77539 7.06831 8.19962 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034155 B = 0.005072 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.598926 B = 5518.648422 C = 5975.260876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.245 1.245 7 C -1.039 5.039 8 H 0.125 0.875 9 S 2.722 3.278 10 O -1.045 7.045 11 O -1.040 7.040 12 N -1.119 6.119 13 C 0.201 3.799 14 C -0.028 4.028 15 C -0.010 4.010 16 N -0.519 5.519 17 C 0.180 3.820 18 N -0.477 5.477 19 C 0.080 3.920 20 C -0.113 4.113 21 C -0.036 4.036 22 H 0.299 0.701 23 H 0.412 0.588 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.190 0.810 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.111 0.889 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -14.435 5.860 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.168 1.168 7 C -1.173 5.173 8 H 0.143 0.857 9 S 2.823 3.177 10 O -1.035 7.035 11 O -1.030 7.030 12 N -0.878 5.878 13 C 0.074 3.926 14 C -0.143 4.143 15 C -0.160 4.160 16 N -0.239 5.239 17 C -0.083 4.083 18 N -0.161 5.161 19 C -0.040 4.040 20 C -0.151 4.151 21 C -0.075 4.075 22 H 0.109 0.891 23 H 0.245 0.755 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.207 0.793 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.157 0.843 31 H 0.129 0.871 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.554 -14.670 5.869 17.106 hybrid contribution -0.090 1.654 -0.318 1.686 sum 6.464 -13.017 5.552 15.557 Atomic orbital electron populations 1.69990 1.08814 1.32381 1.41390 1.26031 0.95376 1.05438 0.87473 0.85102 0.79230 0.74685 0.80000 1.18064 1.18784 1.16805 1.30888 1.07417 1.12250 1.66756 0.85717 0.99858 0.72466 0.73894 0.71484 1.93317 1.74866 1.88372 1.46935 1.93299 1.74415 1.88228 1.47074 1.55530 1.54942 1.49891 1.27412 1.19482 0.93022 0.91742 0.88309 1.20919 0.97154 0.87586 1.08669 1.22475 0.95886 0.92725 1.04897 1.69877 1.25967 1.07798 1.20265 1.25343 0.87465 0.94614 1.00889 1.46619 1.18384 1.07362 1.43717 1.22836 0.85877 0.96439 0.98858 1.22815 0.95081 0.91060 1.06121 1.20920 0.94664 0.88305 1.03624 0.89084 0.75480 0.91126 0.88005 0.79274 0.90093 0.87624 0.89066 0.84343 0.87079 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.96 13.19 21.45 0.28 -52.67 16 2 C 0.07 3.83 5.46 84.66 0.46 4.29 16 3 Si 0.99 40.71 29.54 68.60 2.03 42.73 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -1.04 -56.19 9.72 67.73 0.66 -55.53 16 8 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 9 S 2.72 144.80 5.02 -56.49 -0.28 144.52 16 10 O -1.04 -62.68 18.02 -128.00 -2.31 -64.99 16 11 O -1.04 -60.80 17.49 -128.00 -2.24 -63.04 16 12 N -1.12 -44.74 5.99 -190.78 -1.14 -45.88 16 13 C 0.20 6.93 6.77 85.63 0.58 7.51 16 14 C -0.03 -0.88 6.64 40.88 0.27 -0.61 16 15 C -0.01 -0.31 11.78 83.52 0.98 0.67 16 16 N -0.52 -16.30 11.26 -187.33 -2.11 -18.41 16 17 C 0.18 4.68 8.58 138.36 1.19 5.87 16 18 N -0.48 -13.04 3.61 -494.77 -1.79 -14.82 16 19 C 0.08 1.56 7.78 86.75 0.67 2.23 16 20 C -0.11 -1.20 7.17 31.59 0.23 -0.97 16 21 C -0.04 -0.50 6.86 30.64 0.21 -0.29 16 22 H 0.30 15.88 8.31 -92.71 -0.77 15.11 16 23 H 0.41 15.12 8.64 -96.76 -0.84 14.28 16 24 H 0.07 2.54 7.75 -2.39 -0.02 2.52 16 25 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 26 H 0.19 4.94 8.06 -2.91 -0.02 4.91 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.14 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -81.70 293.77 -1.99 -83.68 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.31 Total: 25.70 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 5.25 Total: -36.82 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -4.75 Total: -131.79 kcal Atomic # 8 Polarization: -123.48 SS G_CDS: -4.55 Total: -128.02 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 144.80 SS G_CDS: -0.28 Total: 144.52 kcal Total: -81.70 -1.99 -83.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719384416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.389 kcal (2) G-P(sol) polarization free energy of solvation -81.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds