Wall clock time and date at job start Mon Mar 30 2020 05:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 N 1.30039 * 121.20631 * 90.02553 * 15 14 12 17 17 S 1.56596 * 108.33896 * 180.02562 * 16 15 14 18 18 C 1.72066 * 95.79233 * 359.97438 * 17 16 15 19 19 C 1.47526 * 127.64859 * 179.97438 * 18 17 16 20 20 O 1.21488 * 120.00075 * 180.02562 * 19 18 17 21 21 O 1.34759 * 120.00336 * 0.02735 * 19 18 17 22 22 N 1.30891 * 121.20511 * 269.74550 * 15 14 12 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 28 28 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 29 29 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 30 30 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 31 31 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 32 32 H 0.96701 * 117.00567 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 7 1.9133 -1.4236 -4.3206 17 16 2.9260 -1.8471 -5.4374 18 6 4.1875 -0.7887 -4.9384 19 6 5.5207 -0.6252 -5.5485 20 8 6.3105 0.1692 -5.0784 21 8 5.8625 -1.3570 -6.6272 22 7 3.6956 -0.1513 -3.8898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.9026 -0.5283 4.4376 27 1 0.3491 -1.9549 -1.3693 28 1 1.8134 -2.5258 -2.2045 29 1 1.7059 -2.6221 -0.4301 30 1 0.6815 0.1053 -2.6087 31 1 2.1026 1.1189 -2.2604 32 1 6.7466 -1.2147 -6.9921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724328506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:21 Heat of formation + Delta-G solvation = -1.385463 kcal Electronic energy + Delta-G solvation = -18416.723264 eV Core-core repulsion = 15312.882887 eV Total energy + Delta-G solvation = -3103.840376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24627 -40.22350 -37.38270 -36.49842 -33.29570 -32.52730 -30.25175 -28.54489 -26.95692 -25.31884 -24.45525 -22.11056 -20.42783 -19.81934 -19.33754 -18.15117 -17.54885 -16.71923 -16.49231 -15.73435 -15.22265 -14.40347 -14.26300 -14.09272 -13.78738 -13.06629 -12.85575 -12.25134 -12.14977 -12.07122 -12.01504 -11.53223 -11.35957 -11.20431 -11.11706 -10.99596 -10.82477 -10.36407 -10.24011 -10.04353 -9.60522 -9.31898 -9.08626 -8.58505 -7.47606 -6.06334 -4.04834 -0.27541 0.80437 1.49267 1.80508 2.10271 2.58569 3.25720 3.36112 3.38941 4.10315 4.39417 4.67813 4.81376 5.16172 5.24370 5.36254 5.65817 5.87033 5.93484 6.00370 6.17871 6.23799 6.25911 6.48308 6.64396 6.84035 7.11642 7.21355 7.43912 7.57950 7.81839 7.95260 8.62704 9.01323 9.54792 11.06781 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.004515 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.439037 B = 6200.657956 C = 6534.216392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.184 3.816 3 H 0.044 0.956 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.267 1.267 12 N -0.516 5.516 13 C 0.032 3.968 14 C 0.134 3.866 15 C 0.264 3.736 16 N -0.528 5.528 17 S 0.493 5.507 18 C -0.061 4.061 19 C 0.574 3.426 20 O -0.467 6.467 21 O -0.505 6.505 22 N -0.391 5.391 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -1.767 -22.024 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.077 3.923 3 H 0.062 0.938 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.192 1.192 12 N -0.240 5.240 13 C -0.116 4.116 14 C 0.001 3.999 15 C -0.025 4.025 16 N -0.370 5.370 17 S 0.634 5.366 18 C -0.344 4.344 19 C 0.411 3.589 20 O -0.350 6.350 21 O -0.318 6.318 22 N -0.115 5.115 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.289 -2.349 -21.873 22.036 hybrid contribution -0.551 1.673 0.675 1.887 sum 0.737 -0.676 -21.197 21.221 Atomic orbital electron populations 1.22853 1.01420 1.01328 0.99086 1.19826 0.88862 0.95422 0.88227 0.93832 1.20873 1.31600 1.13840 0.87596 0.90005 1.24897 0.95892 0.96589 0.95752 1.69875 1.45658 1.40305 0.97873 0.86891 0.80474 0.83909 0.77076 1.20757 1.22365 1.19248 1.62164 1.58928 1.02560 1.00398 1.22337 0.96709 0.91091 1.01485 1.20680 0.96035 0.97538 0.85632 1.23586 0.87591 0.92704 0.98603 1.73444 1.32589 1.19620 1.11322 1.81369 0.96870 1.32764 1.25587 1.27412 1.01794 1.04828 1.00411 1.18514 0.84254 0.78036 0.78110 1.90991 1.50073 1.33502 1.60453 1.84454 1.41713 1.62574 1.43035 1.68522 1.08913 1.23628 1.10472 0.92194 0.95214 0.93446 0.92597 0.95654 0.93797 0.90060 0.92194 0.88101 0.71117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.01 7.92 37.16 0.29 -3.71 16 2 C 0.18 4.32 1.90 -68.87 -0.13 4.19 16 3 H 0.04 1.05 6.99 -51.93 -0.36 0.69 16 4 C -0.50 -13.97 8.55 -34.44 -0.29 -14.27 16 5 H 0.08 2.51 7.35 -52.49 -0.39 2.13 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 8 Si 0.89 21.75 24.37 -169.99 -4.14 17.60 16 9 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.52 -10.87 4.69 -237.73 -1.12 -11.99 16 13 C 0.03 0.63 8.61 60.06 0.52 1.15 16 14 C 0.13 2.37 5.07 -4.97 -0.03 2.34 16 15 C 0.26 4.33 6.25 -159.45 -1.00 3.33 16 16 N -0.53 -7.61 10.33 21.18 0.22 -7.40 16 17 S 0.49 5.20 23.25 -107.50 -2.50 2.71 16 18 C -0.06 -0.81 7.58 -13.61 -0.10 -0.91 16 19 C 0.57 6.57 8.34 34.52 0.29 6.86 16 20 O -0.47 -7.01 17.89 -19.26 -0.34 -7.35 16 21 O -0.50 -3.19 13.37 -40.66 -0.54 -3.73 16 22 N -0.39 -6.56 10.84 -22.02 -0.24 -6.80 16 23 H 0.06 1.26 6.33 -51.93 -0.33 0.93 16 24 H 0.03 0.54 6.91 -51.93 -0.36 0.18 16 25 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.03 0.47 6.21 -51.93 -0.32 0.15 16 28 H 0.04 0.79 6.39 -51.93 -0.33 0.46 16 29 H 0.08 1.75 6.86 -51.93 -0.36 1.39 16 30 H 0.06 0.98 7.06 -51.93 -0.37 0.61 16 31 H 0.10 1.73 7.93 -51.93 -0.41 1.32 16 32 H 0.43 0.55 9.11 45.56 0.42 0.96 16 LS Contribution 281.59 15.07 4.24 4.24 Total: -1.00 -34.28 281.59 -6.36 -40.64 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -2.16 Total: -2.19 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.55 Total: 0.89 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.36 Total: -52.81 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.89 Total: -11.08 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.60 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -2.50 Total: 2.71 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.28 -6.36 -40.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724328506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.254 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds