Wall clock time and date at job start Mon Mar 30 2020 05:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46896 * 111.00084 * 306.05107 * 12 2 1 14 14 C 1.46904 * 110.99915 * 70.00061 * 12 2 1 15 15 C 1.50699 * 109.47221 * 170.00202 * 14 12 2 16 16 N 1.30039 * 121.20631 * 90.02553 * 15 14 12 17 17 S 1.56596 * 108.33896 * 180.02562 * 16 15 14 18 18 C 1.72066 * 95.79233 * 359.97438 * 17 16 15 19 19 C 1.47526 * 127.64859 * 179.97438 * 18 17 16 20 20 O 1.21488 * 120.00075 * 180.02562 * 19 18 17 21 21 O 1.34759 * 120.00336 * 0.02735 * 19 18 17 22 22 N 1.30891 * 121.20511 * 269.74550 * 15 14 12 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47503 * 59.99333 * 13 12 2 28 28 H 1.09007 * 109.47634 * 179.97438 * 13 12 2 29 29 H 1.09003 * 109.46925 * 299.99540 * 13 12 2 30 30 H 1.08999 * 109.46953 * 290.00368 * 14 12 2 31 31 H 1.08998 * 109.47126 * 50.00315 * 14 12 2 32 32 H 0.96701 * 117.00567 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4775 -0.5163 -3.5793 16 7 1.9133 -1.4236 -4.3206 17 16 2.9260 -1.8471 -5.4374 18 6 4.1875 -0.7887 -4.9384 19 6 5.5207 -0.6252 -5.5485 20 8 6.3105 0.1692 -5.0784 21 8 5.8625 -1.3570 -6.6272 22 7 3.6956 -0.1513 -3.8898 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.9026 -0.5283 4.4376 27 1 0.3491 -1.9549 -1.3693 28 1 1.8134 -2.5258 -2.2045 29 1 1.7059 -2.6221 -0.4301 30 1 0.6815 0.1053 -2.6087 31 1 2.1026 1.1189 -2.2604 32 1 6.7466 -1.2147 -6.9921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724328506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:21 Heat of formation + Delta-G solvation = -30.903371 kcal Electronic energy + Delta-G solvation = -18418.003256 eV Core-core repulsion = 15312.882887 eV Total energy + Delta-G solvation = -3105.120369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.32112 -41.09169 -39.01164 -37.26966 -34.87906 -34.10361 -31.98094 -29.88450 -28.13932 -27.22537 -26.05182 -23.25395 -21.65634 -21.00256 -20.72819 -19.01869 -18.69267 -18.43498 -17.70608 -17.17141 -16.58043 -15.83699 -15.71440 -15.59850 -14.94416 -14.65419 -14.41520 -14.06662 -13.51588 -13.16318 -13.13374 -13.02437 -12.80921 -12.78434 -12.53456 -12.21925 -12.10267 -12.03884 -11.85833 -11.44243 -11.27902 -11.13307 -10.75169 -10.33313 -9.06548 -8.26339 -6.29604 -1.27036 -0.14645 0.48364 0.75728 1.29852 1.31799 1.38657 1.48306 1.58017 2.33887 3.01294 3.07894 3.31347 3.79383 4.09227 4.14582 4.36793 4.38299 4.46175 4.57573 4.62247 4.66868 4.76967 4.96982 5.15870 5.32129 5.40430 5.61438 5.96486 6.18202 6.30716 6.61132 6.75469 6.75697 7.34522 8.90733 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032013 B = 0.004515 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.439037 B = 6200.657956 C = 6534.216392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.187 3.813 3 H 0.040 0.960 4 C -0.503 4.503 5 H 0.035 0.965 6 C 0.012 3.988 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.265 1.265 10 H -0.300 1.300 11 H -0.245 1.245 12 N -0.538 5.538 13 C 0.044 3.956 14 C 0.137 3.863 15 C 0.247 3.753 16 N -0.553 5.553 17 S 0.617 5.383 18 C -0.090 4.090 19 C 0.586 3.414 20 O -0.512 6.512 21 O -0.480 6.480 22 N -0.437 5.437 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.452 0.548 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -1.475 -25.015 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 H 0.057 0.943 4 C -0.541 4.541 5 H 0.053 0.947 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.191 1.191 10 H -0.228 1.228 11 H -0.169 1.169 12 N -0.263 5.263 13 C -0.105 4.105 14 C 0.005 3.995 15 C -0.041 4.041 16 N -0.398 5.398 17 S 0.759 5.241 18 C -0.370 4.370 19 C 0.424 3.576 20 O -0.398 6.398 21 O -0.296 6.296 22 N -0.161 5.161 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges 0.040 -2.076 -24.941 25.028 hybrid contribution -0.052 1.358 1.365 1.926 sum -0.011 -0.718 -23.577 23.587 Atomic orbital electron populations 1.22702 0.99179 1.01730 1.00395 1.19601 0.90465 0.94501 0.87520 0.94255 1.21110 1.30509 1.12517 0.89978 0.94700 1.25772 0.97507 1.00032 0.95213 1.70040 1.47880 1.42611 0.98565 0.85830 0.79009 0.79949 0.77426 1.19109 1.22830 1.16934 1.61961 1.59801 1.03299 1.01212 1.22181 0.97361 0.90316 1.00598 1.20601 0.97279 0.97026 0.84642 1.23124 0.87884 0.93986 0.99073 1.73120 1.34726 1.19393 1.12516 1.80873 0.93242 1.28472 1.21525 1.27719 1.03328 1.05620 1.00334 1.18392 0.83284 0.77497 0.78431 1.90978 1.51169 1.35635 1.62064 1.84407 1.43660 1.60744 1.40769 1.68472 1.09539 1.25606 1.12529 0.92343 0.91614 0.94206 0.92567 0.94404 0.92250 0.93296 0.90542 0.88292 0.68228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.32 7.92 71.98 0.57 -6.75 16 2 C 0.19 8.71 1.90 44.17 0.08 8.80 16 3 H 0.04 1.87 6.99 -2.39 -0.02 1.85 16 4 C -0.50 -28.95 8.55 25.60 0.22 -28.73 16 5 H 0.03 2.27 7.35 -2.91 -0.02 2.25 16 6 C 0.01 0.68 5.45 84.65 0.46 1.14 16 7 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 8 Si 0.95 44.72 24.37 68.60 1.67 46.39 16 9 H -0.27 -11.75 6.87 99.48 0.68 -11.06 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.25 -10.60 6.53 99.48 0.65 -9.95 16 12 N -0.54 -22.57 4.69 -906.04 -4.25 -26.82 16 13 C 0.04 1.70 8.61 127.69 1.10 2.80 16 14 C 0.14 4.65 5.07 85.56 0.43 5.08 16 15 C 0.25 7.77 6.25 139.54 0.87 8.64 16 16 N -0.55 -14.49 10.33 -86.89 -0.90 -15.39 16 17 S 0.62 10.92 23.25 -56.49 -1.31 9.61 16 18 C -0.09 -2.21 7.58 87.09 0.66 -1.55 16 19 C 0.59 12.41 8.34 70.27 0.59 12.99 16 20 O -0.51 -15.15 17.89 19.87 0.36 -14.79 16 21 O -0.48 -4.50 13.37 -56.70 -0.76 -5.26 16 22 N -0.44 -14.32 10.84 -223.57 -2.42 -16.74 16 23 H 0.06 2.35 6.33 -2.39 -0.02 2.33 16 24 H 0.07 2.17 6.91 -2.39 -0.02 2.15 16 25 H 0.04 1.66 3.27 -2.38 -0.01 1.65 16 26 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 27 H 0.04 1.35 6.21 -2.39 -0.01 1.34 16 28 H 0.06 2.08 6.39 -2.38 -0.02 2.07 16 29 H 0.05 2.18 6.86 -2.39 -0.02 2.17 16 30 H 0.08 2.30 7.06 -2.39 -0.02 2.28 16 31 H 0.10 3.32 7.93 -2.39 -0.02 3.30 16 32 H 0.45 -0.38 9.11 -74.06 -0.67 -1.05 16 Total: -1.00 -77.68 281.59 -1.90 -79.58 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 0.43 Total: 0.75 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.99 Total: 2.43 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -7.27 Total: -118.70 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.40 Total: -20.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.67 Total: 46.39 kcal Atomic # 16 Polarization: 10.92 SS G_CDS: -1.31 Total: 9.61 kcal Total: -77.68 -1.90 -79.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724328506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.676 kcal (2) G-P(sol) polarization free energy of solvation -77.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds