Wall clock time and date at job start Mon Mar 30 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46903 * 111.00066 * 58.94896 * 12 2 1 14 14 C 1.46906 * 110.99440 * 294.99743 * 12 2 1 15 15 C 1.50698 * 109.46791 * 189.99797 * 14 12 2 16 16 N 1.30039 * 121.20538 * 90.02462 * 15 14 12 17 17 S 1.56603 * 108.33767 * 179.97438 * 16 15 14 18 18 C 1.72072 * 95.79187 * 0.02562 * 17 16 15 19 19 C 1.47527 * 127.64503 * 179.97438 * 18 17 16 20 20 O 1.21487 * 119.99883 * 179.97438 * 19 18 17 21 21 O 1.34760 * 120.00450 * 359.97438 * 19 18 17 22 22 N 1.30899 * 121.20635 * 269.74602 * 15 14 12 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46799 * 60.00373 * 13 12 2 28 28 H 1.08995 * 109.46967 * 180.02562 * 13 12 2 29 29 H 1.09002 * 109.46933 * 300.00619 * 13 12 2 30 30 H 1.08996 * 109.47414 * 309.99759 * 14 12 2 31 31 H 1.08997 * 109.46846 * 70.00181 * 14 12 2 32 32 H 0.96699 * 117.00177 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5571 3.6005 16 7 3.5375 -0.1226 3.9669 17 16 3.9999 -0.9461 5.2161 18 6 2.5969 -1.9389 5.2987 19 6 2.3057 -3.0081 6.2725 20 8 1.2623 -3.6265 6.2017 21 8 3.1969 -3.2990 7.2405 22 7 1.8355 -1.5275 4.2993 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 1.8762 -2.6151 0.3647 28 1 1.9053 -2.5656 2.1440 29 1 0.4384 -2.0742 1.2639 30 1 1.9298 1.0870 2.3125 31 1 0.5723 -0.0345 2.5726 32 1 2.9620 -4.0078 7.8550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724328508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:24 Heat of formation + Delta-G solvation = -11.048017 kcal Electronic energy + Delta-G solvation = -18404.847848 eV Core-core repulsion = 15300.588472 eV Total energy + Delta-G solvation = -3104.259376 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19565 -40.20954 -37.08087 -36.50157 -33.19424 -32.66312 -29.54992 -27.96850 -27.10248 -25.18460 -24.32804 -22.02885 -20.46333 -19.79389 -19.20271 -18.12111 -17.51955 -16.54918 -16.20027 -15.63503 -14.92091 -14.45884 -14.16414 -13.96884 -13.59206 -12.96844 -12.54738 -12.08791 -12.06723 -11.92878 -11.53611 -11.18213 -11.11958 -11.08073 -10.91065 -10.78922 -10.65046 -10.50289 -10.22767 -10.03045 -9.92150 -9.28954 -8.88583 -8.40264 -7.26347 -6.02298 -4.05852 -0.21931 0.86570 1.57669 1.84489 2.11904 2.60815 3.30373 3.38231 3.42961 4.15930 4.42265 4.69885 5.11948 5.23322 5.30503 5.42117 5.86706 5.93088 6.06166 6.21551 6.43768 6.66472 6.81439 6.90504 7.06894 7.22717 7.40145 7.45753 7.69245 7.79679 8.04783 8.32328 8.51984 8.99283 9.59024 11.04993 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033953 B = 0.004220 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.474759 B = 6632.895816 C = 6734.096478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.213 3.787 3 H 0.043 0.957 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.528 5.528 13 C 0.034 3.966 14 C 0.137 3.863 15 C 0.262 3.738 16 N -0.511 5.511 17 S 0.493 5.507 18 C -0.068 4.068 19 C 0.575 3.425 20 O -0.471 6.471 21 O -0.504 6.504 22 N -0.405 5.405 23 H 0.090 0.910 24 H 0.009 0.991 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -4.667 18.948 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.107 3.893 3 H 0.061 0.939 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.253 5.253 13 C -0.114 4.114 14 C 0.004 3.996 15 C -0.026 4.026 16 N -0.351 5.351 17 S 0.633 5.367 18 C -0.351 4.351 19 C 0.412 3.588 20 O -0.355 6.355 21 O -0.317 6.317 22 N -0.129 5.129 23 H 0.109 0.891 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 6.200 -3.831 18.508 19.891 hybrid contribution -1.743 -1.184 -0.859 2.275 sum 4.458 -5.015 17.649 18.882 Atomic orbital electron populations 1.22433 1.00522 0.99686 1.00726 1.19369 0.89968 0.94677 0.85287 0.93869 1.21112 1.30635 1.12515 0.89487 0.91865 1.24910 0.95197 0.95120 0.98981 1.69891 1.37037 1.23006 1.23361 0.86449 0.78531 0.79643 0.82839 1.19784 1.21151 1.21032 1.62395 1.59619 1.02315 1.00995 1.22266 0.97780 0.90532 1.00826 1.20637 0.95787 0.97920 0.85288 1.23701 0.88341 0.91504 0.99048 1.73434 1.17518 1.29477 1.14715 1.81397 1.19496 1.16468 1.19329 1.27361 1.01465 1.05470 1.00778 1.18532 0.81028 0.80357 0.78835 1.90977 1.25070 1.48381 1.71034 1.84464 1.48431 1.57435 1.41363 1.68588 1.30745 1.10190 1.03424 0.89113 0.97229 0.94803 0.93013 0.90707 0.94130 0.95606 0.88413 0.91997 0.71188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.28 37.16 0.31 -3.87 16 2 C 0.21 5.31 2.34 -68.86 -0.16 5.15 16 3 H 0.04 1.17 8.03 -51.93 -0.42 0.75 16 4 C -0.50 -13.60 7.94 -34.44 -0.27 -13.88 16 5 H 0.06 1.74 6.75 -52.49 -0.35 1.39 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.53 -11.63 4.73 -237.72 -1.13 -12.75 16 13 C 0.03 0.72 8.69 60.07 0.52 1.25 16 14 C 0.14 2.59 4.94 -4.97 -0.02 2.56 16 15 C 0.26 4.52 6.24 -159.44 -0.99 3.52 16 16 N -0.51 -8.07 11.42 21.19 0.24 -7.82 16 17 S 0.49 5.56 23.25 -107.50 -2.50 3.06 16 18 C -0.07 -0.91 7.58 -13.61 -0.10 -1.01 16 19 C 0.58 6.55 8.34 34.52 0.29 6.84 16 20 O -0.47 -6.93 17.89 -19.25 -0.34 -7.27 16 21 O -0.50 -3.21 13.37 -40.66 -0.54 -3.76 16 22 N -0.40 -6.77 9.77 -22.01 -0.22 -6.98 16 23 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 24 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 25 H 0.03 0.79 6.38 -51.93 -0.33 0.46 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.07 1.65 6.53 -51.93 -0.34 1.31 16 28 H 0.04 0.80 6.40 -51.93 -0.33 0.47 16 29 H 0.03 0.54 6.28 -51.93 -0.33 0.21 16 30 H 0.10 1.79 8.00 -51.93 -0.42 1.38 16 31 H 0.06 1.16 6.94 -51.93 -0.36 0.80 16 32 H 0.43 0.55 9.11 45.56 0.42 0.96 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -32.45 287.82 -7.34 -39.79 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -2.26 Total: -2.43 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.53 Total: 2.09 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.47 Total: -52.14 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.89 Total: -11.03 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -2.50 Total: 3.06 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.45 -7.34 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724328508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.740 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds