Wall clock time and date at job start Mon Mar 30 2020 04:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99750 * 2 1 4 4 H 1.09001 * 109.47626 * 330.00667 * 3 2 1 5 5 C 1.53006 * 109.47036 * 90.00531 * 3 2 1 6 6 C 1.50699 * 109.47044 * 210.00117 * 3 2 1 7 7 N 1.29394 * 124.70190 * 135.00196 * 6 3 2 8 8 C 1.30915 * 117.47488 * 180.02562 * 7 6 3 9 9 C 1.50703 * 123.04059 * 179.97438 * 8 7 6 10 10 C 1.36818 * 113.91706 * 0.02562 * 8 7 6 11 11 C 1.46442 * 126.18519 * 180.02562 * 10 8 7 12 12 O 1.21654 * 119.99558 * 0.02562 * 11 10 8 13 13 O 1.34879 * 120.00459 * 179.97438 * 11 10 8 14 14 C 1.34862 * 117.00077 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00302 * 0.02562 * 14 13 11 16 16 C 1.38784 * 119.99866 * 180.02562 * 14 13 11 17 17 N 1.31435 * 120.00100 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00223 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47390 * 89.99887 * 18 16 14 20 20 H 1.48501 * 109.47257 * 210.00308 * 18 16 14 21 21 H 1.48504 * 109.46742 * 329.99996 * 18 16 14 22 22 S 1.70924 * 124.70222 * 314.69992 * 6 3 2 23 23 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46841 * 299.99499 * 1 2 3 25 25 H 1.08997 * 109.47617 * 59.99620 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99477 * 5 3 2 27 27 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 28 28 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 29 29 H 1.09001 * 109.47393 * 90.02118 * 9 8 7 30 30 H 1.08996 * 109.46745 * 210.02748 * 9 8 7 31 31 H 1.09004 * 109.47139 * 330.02094 * 9 8 7 32 32 H 0.96999 * 120.00497 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3385 1.2639 -0.7104 7 7 3.7344 2.1328 -1.5837 8 6 4.9182 1.9591 -2.1149 9 6 5.5025 2.8931 -3.1432 10 6 5.5765 0.8522 -1.6529 11 6 6.9097 0.4055 -2.0622 12 8 7.5372 1.0413 -2.8881 13 8 7.4424 -0.7100 -1.5228 14 6 8.6732 -1.0661 -1.9436 15 1 9.1866 -0.4660 -2.6803 16 6 9.2801 -2.2036 -1.4300 17 7 10.4799 -2.5503 -1.8397 18 14 8.3919 -3.2419 -0.1562 19 1 7.5856 -4.2836 -0.8416 20 1 9.3871 -3.8922 0.7337 21 1 7.4969 -2.3753 0.6520 22 16 4.5342 0.0666 -0.4689 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.2569 1.8014 1.9564 27 1 2.8830 1.0774 1.9563 28 1 2.6614 2.7669 1.4426 29 1 6.0630 3.6816 -2.6411 30 1 6.1690 2.3367 -3.8022 31 1 4.6981 3.3364 -3.7302 32 1 10.9042 -3.3452 -1.4805 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750439450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:00 Heat of formation + Delta-G solvation = -101.383489 kcal Electronic energy + Delta-G solvation = -18316.553467 eV Core-core repulsion = 15176.084099 eV Total energy + Delta-G solvation = -3140.469367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59475 -40.77100 -39.19635 -37.49319 -34.59017 -34.00609 -31.62001 -30.06741 -27.80590 -27.47596 -26.17585 -23.47740 -22.84528 -20.67674 -20.23466 -19.33986 -18.26249 -17.42043 -17.33744 -17.04705 -16.46527 -16.35873 -15.77263 -15.59046 -14.90615 -14.62554 -14.35319 -14.13617 -13.91409 -13.53571 -13.49079 -13.37526 -13.09667 -12.65375 -12.53545 -12.45546 -12.33989 -12.07816 -11.90982 -11.31709 -10.94758 -10.91576 -10.83580 -10.63243 -9.91440 -8.62058 -6.46545 -1.01446 0.03032 0.54667 1.10712 1.28869 1.35471 1.49065 1.85007 2.12444 2.23077 2.32667 2.86373 3.24055 3.62306 3.80387 4.00757 4.04821 4.33519 4.50615 4.57512 4.59831 4.66673 4.69946 4.79689 4.83010 4.91537 5.18802 5.19837 5.41388 5.79618 6.04725 6.35746 6.38223 6.71941 7.41726 8.50037 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.005951 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.177688 B = 4703.785118 C = 5737.213264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.163 3.837 4 H 0.113 0.887 5 C -0.167 4.167 6 C 0.052 3.948 7 N -0.475 5.475 8 C 0.146 3.854 9 C -0.084 4.084 10 C -0.305 4.305 11 C 0.488 3.512 12 O -0.546 6.546 13 O -0.249 6.249 14 C -0.405 4.405 15 H 0.066 0.934 16 C 0.024 3.976 17 N -0.906 5.906 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.257 1.257 21 H -0.250 1.250 22 S 0.243 5.757 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 6.248 8.243 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.101 3.899 4 H 0.131 0.869 5 C -0.226 4.226 6 C -0.222 4.222 7 N -0.191 5.191 8 C 0.006 3.994 9 C -0.142 4.142 10 C -0.427 4.427 11 C 0.335 3.665 12 O -0.443 6.443 13 O -0.158 6.158 14 C -0.481 4.481 15 H 0.084 0.916 16 C -0.177 4.177 17 N -0.544 5.544 18 Si 0.786 3.214 19 H -0.181 1.181 20 H -0.181 1.181 21 H -0.174 1.174 22 S 0.503 5.497 23 H 0.118 0.882 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.398 5.563 8.618 24.635 hybrid contribution 0.833 0.317 -0.785 1.187 sum -21.565 5.880 7.834 23.685 Atomic orbital electron populations 1.23099 0.77850 1.04455 1.01704 1.87926 1.22780 1.26244 1.95263 1.20563 0.86598 0.86755 0.95951 0.86914 1.22333 1.04832 1.02334 0.93068 1.27846 1.02074 0.94615 0.97657 1.66056 1.14108 1.28421 1.10514 1.21174 0.88291 0.93108 0.96783 1.20627 1.01139 0.97043 0.95428 1.24838 0.99889 1.05770 1.12174 1.19486 0.85515 0.80332 0.81178 1.90661 1.62405 1.56694 1.34554 1.83577 1.32494 1.39627 1.60101 1.20392 0.89989 1.11810 1.25881 0.91595 1.25468 0.95837 0.96886 0.99549 1.69668 1.14637 1.26610 1.43533 0.85312 0.79033 0.78640 0.78414 1.18099 1.18118 1.17395 1.84107 1.05423 1.26112 1.34105 0.88182 0.91475 0.92879 0.88118 0.91907 0.90377 0.89197 0.90472 0.88195 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -7.97 10.17 -148.98 -1.52 -9.49 16 3 C 0.16 3.12 3.23 29.85 0.10 3.22 16 4 H 0.11 1.75 7.79 -2.39 -0.02 1.73 16 5 C -0.17 -2.45 9.51 71.98 0.68 -1.76 16 6 C 0.05 1.46 6.33 88.47 0.56 2.02 16 7 N -0.47 -14.81 10.49 -177.51 -1.86 -16.67 16 8 C 0.15 5.26 6.84 42.36 0.29 5.55 16 9 C -0.08 -2.68 9.72 71.24 0.69 -1.99 16 10 C -0.30 -12.62 6.52 24.08 0.16 -12.46 16 11 C 0.49 25.28 7.86 69.96 0.55 25.83 16 12 O -0.55 -30.58 13.58 19.33 0.26 -30.32 16 13 O -0.25 -13.94 8.47 9.75 0.08 -13.86 16 14 C -0.40 -25.29 10.11 67.95 0.69 -24.61 16 15 H 0.07 4.61 7.09 -2.91 -0.02 4.59 16 16 C 0.02 1.41 5.49 84.88 0.47 1.87 16 17 N -0.91 -54.48 13.96 21.63 0.30 -54.18 16 18 Si 0.97 43.74 28.62 68.60 1.96 45.70 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 22 S 0.24 8.14 22.86 -56.49 -1.29 6.85 16 23 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.47 7.87 -2.38 -0.02 0.45 16 25 H 0.05 0.52 8.08 -2.39 -0.02 0.50 16 26 H 0.10 0.91 7.87 -2.39 -0.02 0.89 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.08 2.90 6.06 -2.39 -0.01 2.88 16 31 H 0.10 2.56 8.14 -2.38 -0.02 2.55 16 32 H 0.29 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -73.52 299.68 4.49 -69.02 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: 1.14 Total: 3.78 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.41 Total: -0.83 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.56 Total: -70.85 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -1.17 Total: -53.67 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.96 Total: 45.70 kcal Atomic # 16 Polarization: 8.14 SS G_CDS: -1.29 Total: 6.85 kcal Total: -73.52 4.49 -69.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750439450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.360 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds