Wall clock time and date at job start Mon Mar 30 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00099 * 2 1 4 4 C 1.50708 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.30907 * 123.03396 * 269.97659 * 4 3 2 6 6 C 1.29391 * 117.47053 * 180.02562 * 5 4 3 7 7 S 1.70931 * 110.58463 * 359.72791 * 6 5 4 8 8 C 1.36756 * 123.03065 * 90.00231 * 4 3 2 9 9 C 1.46499 * 126.18032 * 359.97438 * 8 4 3 10 10 O 1.21613 * 120.00025 * 359.97438 * 9 8 4 11 11 O 1.34880 * 119.99679 * 180.27394 * 9 8 4 12 12 C 1.45201 * 116.99722 * 179.72279 * 11 9 8 13 13 H 1.08997 * 109.47182 * 30.00500 * 12 11 9 14 14 C 1.53002 * 109.47379 * 270.00098 * 12 11 9 15 15 C 1.50706 * 109.47038 * 150.00138 * 12 11 9 16 16 H 1.07993 * 119.99613 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99798 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00078 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99780 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46880 * 90.00362 * 19 17 15 21 21 H 1.48507 * 109.47436 * 210.00188 * 19 17 15 22 22 H 1.48494 * 109.47457 * 330.00539 * 19 17 15 23 23 H 1.08997 * 109.47075 * 60.00084 * 1 2 3 24 24 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47279 * 299.99813 * 1 2 3 26 26 H 1.08995 * 109.47387 * 60.00327 * 3 2 1 27 27 H 1.08995 * 109.47333 * 300.00124 * 3 2 1 28 28 H 1.07993 * 124.71313 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47253 * 180.02562 * 14 12 11 30 30 H 1.08997 * 109.47292 * 300.00335 * 14 12 11 31 31 H 1.09005 * 109.46751 * 60.00344 * 14 12 11 32 32 H 0.96999 * 119.99775 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2235 1.1307 1.0984 6 6 5.5074 1.0294 0.9735 7 16 5.9491 0.9864 -0.6772 8 6 4.2561 1.1273 -1.1456 9 6 3.7383 1.1677 -2.5154 10 8 2.5416 1.2615 -2.7106 11 8 4.5884 1.0947 -3.5601 12 6 4.0045 1.1343 -4.8890 13 1 3.0875 1.7230 -4.8655 14 6 3.6850 -0.2897 -5.3484 15 6 4.9814 1.7643 -5.8482 16 1 5.9447 2.1008 -5.4945 17 6 4.6455 1.9101 -7.1774 18 7 3.4726 1.4999 -7.6082 19 14 5.8560 2.6917 -8.3662 20 1 6.7200 1.6381 -8.9569 21 1 5.1105 3.3844 -9.4479 22 1 6.6998 3.6738 -7.6393 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 6.2031 0.9752 1.7977 29 1 3.2472 -0.2599 -6.3461 30 1 4.6021 -0.8783 -5.3719 31 1 2.9784 -0.7453 -4.6546 32 1 3.2362 1.6028 -8.5433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793149270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:03 Heat of formation + Delta-G solvation = -83.584436 kcal Electronic energy + Delta-G solvation = -18539.856211 eV Core-core repulsion = 15400.158669 eV Total energy + Delta-G solvation = -3139.697542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26605 -39.07094 -37.41881 -35.76137 -33.31377 -31.37350 -29.72877 -28.12599 -26.17397 -25.35296 -24.53566 -22.85766 -20.52877 -19.09943 -18.53197 -16.93578 -16.47709 -16.36039 -15.94023 -15.38421 -15.14617 -15.02959 -14.72920 -14.13723 -14.03225 -13.01801 -12.89042 -12.29117 -12.27200 -11.96694 -11.47937 -11.30882 -11.21239 -11.12450 -10.87107 -10.44004 -10.31791 -10.09533 -9.76895 -9.64853 -9.50437 -9.39790 -8.99497 -8.96205 -8.53257 -6.22394 -4.29689 0.18700 1.20462 1.62925 2.35572 3.22475 3.26125 3.27104 3.30555 3.48335 3.87806 4.29065 4.35938 4.89837 4.99609 5.10855 5.33656 5.46217 5.52452 5.64947 5.69677 5.75039 5.99782 6.58351 6.84684 6.86808 7.04906 7.19270 7.52143 7.54538 7.66654 7.85075 8.07479 8.48447 8.79933 9.35694 10.85066 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.005377 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.432674 B = 5206.494887 C = 6157.419304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.130 3.870 4 C 0.132 3.868 5 N -0.465 5.465 6 C 0.006 3.994 7 S 0.232 5.768 8 C -0.248 4.248 9 C 0.532 3.468 10 O -0.496 6.496 11 O -0.349 6.349 12 C 0.218 3.782 13 H 0.049 0.951 14 C -0.156 4.156 15 C -0.522 4.522 16 H 0.069 0.931 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.913 3.087 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.271 1.271 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.206 0.794 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.018 0.982 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -0.967 14.840 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.051 3.949 4 C -0.008 4.008 5 N -0.179 5.179 6 C -0.288 4.288 7 S 0.489 5.511 8 C -0.371 4.371 9 C 0.374 3.626 10 O -0.387 6.387 11 O -0.266 6.266 12 C 0.166 3.834 13 H 0.067 0.933 14 C -0.214 4.214 15 C -0.560 4.560 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.740 3.260 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.196 1.196 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.222 0.778 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.869 -1.192 14.582 14.749 hybrid contribution -0.535 0.594 -0.616 1.009 sum 1.334 -0.598 13.966 14.043 Atomic orbital electron populations 1.22722 0.80542 1.02724 1.00131 1.87885 1.19945 1.26530 1.95506 1.21004 0.85145 0.86171 1.02585 1.20488 0.97026 0.98228 0.85022 1.65987 1.05169 1.15746 1.30995 1.28733 0.95319 1.02984 1.01746 1.84258 1.04766 1.61777 1.00303 1.25225 0.97411 1.17402 0.97096 1.19249 0.85000 0.73959 0.84416 1.90787 1.16133 1.46080 1.85690 1.86602 1.40648 1.81545 1.17782 1.20733 0.95498 0.95075 0.72126 0.93303 1.22177 0.99163 0.96643 1.03370 1.21003 1.02247 1.40408 0.92353 0.91236 1.24880 0.95813 0.95362 0.97838 1.69897 1.20282 1.46122 1.16293 0.86255 0.80434 0.79333 0.80011 1.20303 1.20935 1.19594 0.93400 0.89654 0.94259 0.91789 0.88898 0.77766 0.88079 0.94352 0.96328 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.34 10.69 -35.23 -0.38 -6.72 16 3 C 0.13 2.07 5.77 36.01 0.21 2.28 16 4 C 0.13 2.21 6.46 -83.52 -0.54 1.67 16 5 N -0.46 -6.87 10.49 -11.30 -0.12 -6.99 16 6 C 0.01 0.07 12.21 51.73 0.63 0.70 16 7 S 0.23 3.09 23.09 -107.50 -2.48 0.61 16 8 C -0.25 -4.45 6.52 -36.79 -0.24 -4.69 16 9 C 0.53 11.66 7.90 34.06 0.27 11.93 16 10 O -0.50 -11.68 13.59 -19.35 -0.26 -11.94 16 11 O -0.35 -8.39 9.76 -40.99 -0.40 -8.79 16 12 C 0.22 5.82 2.57 -27.88 -0.07 5.75 16 13 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 14 C -0.16 -3.96 9.33 37.16 0.35 -3.61 16 15 C -0.52 -14.49 8.90 -34.44 -0.31 -14.79 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 19 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.59 6.06 -51.93 -0.31 1.27 16 28 H 0.21 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -31.74 298.07 -5.73 -37.47 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.51 Total: -2.02 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 1.32 Total: 2.41 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.51 Total: -31.31 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -1.04 Total: -27.45 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.48 Total: 0.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.74 -5.73 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793149270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.117 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds