Wall clock time and date at job start Mon Mar 30 2020 04:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00099 * 2 1 4 4 C 1.50708 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.30907 * 123.03396 * 269.97659 * 4 3 2 6 6 C 1.29391 * 117.47053 * 180.02562 * 5 4 3 7 7 S 1.70931 * 110.58463 * 359.72791 * 6 5 4 8 8 C 1.36756 * 123.03065 * 90.00231 * 4 3 2 9 9 C 1.46499 * 126.18032 * 359.97438 * 8 4 3 10 10 O 1.21613 * 120.00025 * 359.97438 * 9 8 4 11 11 O 1.34880 * 119.99679 * 180.27394 * 9 8 4 12 12 C 1.45201 * 116.99722 * 179.72279 * 11 9 8 13 13 H 1.08997 * 109.47182 * 30.00500 * 12 11 9 14 14 C 1.53002 * 109.47379 * 270.00098 * 12 11 9 15 15 C 1.50706 * 109.47038 * 150.00138 * 12 11 9 16 16 H 1.07993 * 119.99613 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99798 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00078 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99780 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46880 * 90.00362 * 19 17 15 21 21 H 1.48507 * 109.47436 * 210.00188 * 19 17 15 22 22 H 1.48494 * 109.47457 * 330.00539 * 19 17 15 23 23 H 1.08997 * 109.47075 * 60.00084 * 1 2 3 24 24 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47279 * 299.99813 * 1 2 3 26 26 H 1.08995 * 109.47387 * 60.00327 * 3 2 1 27 27 H 1.08995 * 109.47333 * 300.00124 * 3 2 1 28 28 H 1.07993 * 124.71313 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47253 * 180.02562 * 14 12 11 30 30 H 1.08997 * 109.47292 * 300.00335 * 14 12 11 31 31 H 1.09005 * 109.46751 * 60.00344 * 14 12 11 32 32 H 0.96999 * 119.99775 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2235 1.1307 1.0984 6 6 5.5074 1.0294 0.9735 7 16 5.9491 0.9864 -0.6772 8 6 4.2561 1.1273 -1.1456 9 6 3.7383 1.1677 -2.5154 10 8 2.5416 1.2615 -2.7106 11 8 4.5884 1.0947 -3.5601 12 6 4.0045 1.1343 -4.8890 13 1 3.0875 1.7230 -4.8655 14 6 3.6850 -0.2897 -5.3484 15 6 4.9814 1.7643 -5.8482 16 1 5.9447 2.1008 -5.4945 17 6 4.6455 1.9101 -7.1774 18 7 3.4726 1.4999 -7.6082 19 14 5.8560 2.6917 -8.3662 20 1 6.7200 1.6381 -8.9569 21 1 5.1105 3.3844 -9.4479 22 1 6.6998 3.6738 -7.6393 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 6.2031 0.9752 1.7977 29 1 3.2472 -0.2599 -6.3461 30 1 4.6021 -0.8783 -5.3719 31 1 2.9784 -0.7453 -4.6546 32 1 3.2362 1.6028 -8.5433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793149270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:02 Heat of formation + Delta-G solvation = -105.271217 kcal Electronic energy + Delta-G solvation = -18540.796621 eV Core-core repulsion = 15400.158669 eV Total energy + Delta-G solvation = -3140.637952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.66748 -40.63005 -38.59761 -37.60344 -35.36426 -32.67631 -31.67579 -29.44019 -27.48900 -27.24729 -25.64095 -24.52301 -22.36908 -20.55246 -19.82882 -18.77221 -18.05649 -17.70205 -17.52577 -16.85245 -16.72732 -16.47980 -16.07070 -15.47276 -15.29070 -14.83319 -14.27391 -13.96622 -13.91104 -13.42763 -13.22620 -13.05331 -12.81370 -12.56677 -12.43103 -12.36420 -12.16587 -11.72011 -11.62170 -11.05006 -10.90300 -10.73058 -10.66597 -10.59321 -10.10898 -8.30082 -6.47345 -1.01838 0.07105 0.53166 1.14147 1.42217 1.44733 1.55329 1.70311 1.81871 2.39750 2.76849 3.00986 3.26785 3.66087 3.90099 4.05510 4.30849 4.40200 4.49515 4.50275 4.56522 4.75832 4.77619 4.79664 4.84241 5.08581 5.44687 5.56777 5.83182 5.99273 6.07017 6.40559 6.54596 6.78991 7.23655 8.77881 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.005377 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.432674 B = 5206.494887 C = 6157.419304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.127 3.873 4 C 0.143 3.857 5 N -0.486 5.486 6 C 0.047 3.953 7 S 0.267 5.733 8 C -0.305 4.305 9 C 0.528 3.472 10 O -0.526 6.526 11 O -0.355 6.355 12 C 0.221 3.779 13 H 0.012 0.988 14 C -0.143 4.143 15 C -0.548 4.548 16 H 0.069 0.931 17 C 0.018 3.982 18 N -0.916 5.916 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.264 1.264 23 H 0.038 0.962 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -0.874 16.438 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.048 3.952 4 C 0.002 3.998 5 N -0.200 5.200 6 C -0.246 4.246 7 S 0.525 5.475 8 C -0.428 4.428 9 C 0.373 3.627 10 O -0.418 6.418 11 O -0.272 6.272 12 C 0.168 3.832 13 H 0.030 0.970 14 C -0.200 4.200 15 C -0.586 4.586 16 H 0.088 0.912 17 C -0.182 4.182 18 N -0.554 5.554 19 Si 0.807 3.193 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 H 0.057 0.943 24 H 0.119 0.881 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.277 0.723 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.820 -1.108 16.197 16.678 hybrid contribution -1.142 0.547 -0.940 1.577 sum 2.677 -0.561 15.257 15.501 Atomic orbital electron populations 1.22940 0.78677 1.04081 1.00951 1.87834 1.22122 1.26916 1.95664 1.21016 0.85342 0.86150 1.02685 1.20696 0.97518 0.96326 0.85271 1.66104 1.06406 1.17788 1.29731 1.29728 0.94878 0.97716 1.02296 1.84100 1.01202 1.61113 1.01095 1.24955 1.00746 1.22150 0.94927 1.19849 0.84654 0.72849 0.85395 1.90758 1.17247 1.47466 1.86352 1.86570 1.40939 1.82289 1.17376 1.20445 0.94120 0.94976 0.73694 0.97025 1.22001 0.99402 0.96267 1.02365 1.21263 1.02470 1.41586 0.93258 0.91245 1.25831 0.97625 0.95397 0.99353 1.70016 1.21943 1.46510 1.16945 0.85157 0.78055 0.78619 0.77437 1.19139 1.20302 1.18861 0.94328 0.88093 0.91647 0.89300 0.91071 0.72254 0.89731 0.93496 0.95996 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -13.58 10.69 -148.98 -1.59 -15.18 16 3 C 0.13 4.06 5.77 71.24 0.41 4.48 16 4 C 0.14 4.70 6.46 42.35 0.27 4.98 16 5 N -0.49 -13.04 10.49 -189.66 -1.99 -15.03 16 6 C 0.05 0.87 12.21 130.60 1.59 2.46 16 7 S 0.27 6.52 23.09 -56.49 -1.30 5.22 16 8 C -0.30 -10.94 6.52 24.08 0.16 -10.78 16 9 C 0.53 24.14 7.90 69.97 0.55 24.69 16 10 O -0.53 -26.30 13.59 19.47 0.26 -26.03 16 11 O -0.36 -17.66 9.76 -57.94 -0.57 -18.23 16 12 C 0.22 12.28 2.57 29.85 0.08 12.36 16 13 H 0.01 0.74 7.16 -2.39 -0.02 0.72 16 14 C -0.14 -7.49 9.33 71.98 0.67 -6.82 16 15 C -0.55 -31.05 8.90 25.60 0.23 -30.82 16 16 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.92 -52.40 11.32 21.45 0.24 -52.16 16 19 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.57 6.06 -2.39 -0.01 2.55 16 28 H 0.26 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.08 4.72 6.07 -2.39 -0.01 4.70 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.28 298.07 3.89 -67.40 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.14 Total: 5.64 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.66 Total: 3.92 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: -1.75 Total: -67.19 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -1.89 Total: -59.44 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 6.52 SS G_CDS: -1.30 Total: 5.22 kcal Total: -71.28 3.89 -67.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793149270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.875 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds