Wall clock time and date at job start Mon Mar 30 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34944 * 126.02735 * 2 1 4 4 C 1.35306 * 107.76573 * 179.89872 * 3 2 1 5 5 C 1.50701 * 126.04855 * 180.13324 * 4 3 2 6 6 C 1.50704 * 109.46672 * 100.24607 * 5 4 3 7 7 O 1.21273 * 120.00193 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99618 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99902 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47281 * 179.97438 * 9 8 6 11 11 C 1.50695 * 109.47120 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00001 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99928 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99861 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.46938 * 119.99863 * 15 13 11 18 18 H 1.48500 * 109.47114 * 239.99856 * 15 13 11 19 19 C 1.39966 * 107.90630 * 0.36968 * 4 3 2 20 20 Cl 1.73607 * 125.90936 * 179.77327 * 19 4 3 21 21 N 1.30891 * 108.17810 * 359.76805 * 19 4 3 22 22 H 1.09001 * 109.47060 * 269.71732 * 1 2 3 23 23 H 1.09004 * 109.47073 * 29.71221 * 1 2 3 24 24 H 1.09000 * 109.47212 * 149.71304 * 1 2 3 25 25 H 1.07997 * 126.11654 * 0.03655 * 3 2 1 26 26 H 1.08994 * 109.47690 * 220.24573 * 5 4 3 27 27 H 1.09001 * 109.47004 * 340.24895 * 5 4 3 28 28 H 0.96996 * 120.00144 * 359.97438 * 8 6 5 29 29 H 1.09000 * 109.47329 * 300.00226 * 9 8 6 30 30 H 1.09001 * 109.47003 * 59.99963 * 9 8 6 31 31 H 1.09000 * 109.47413 * 300.00529 * 10 9 8 32 32 H 1.09001 * 109.46843 * 60.00219 * 10 9 8 33 33 H 0.96995 * 120.00005 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6674 0.0023 5 6 4.7676 1.5465 0.0059 6 6 5.3200 1.6326 1.4055 7 8 4.7739 1.0383 2.3106 8 7 6.4209 2.3702 1.6512 9 6 6.9576 2.4544 3.0118 10 6 8.2003 3.3469 3.0156 11 6 8.7527 3.4330 4.4150 12 1 8.2663 2.9037 5.2210 13 6 9.8790 4.1875 4.6664 14 7 10.4716 4.8316 3.6848 15 14 10.5633 4.2947 6.4012 16 1 9.7197 3.4854 7.3169 17 1 11.9538 3.7735 6.4179 18 1 10.5601 5.7109 6.8479 19 6 3.5350 -0.7323 -0.0049 20 17 4.9348 -1.7591 -0.0108 21 7 2.2889 -1.1329 -0.0062 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 0.8926 -0.5094 24 1 -0.3634 -0.8874 -0.5183 25 1 1.9276 2.1193 0.0006 26 1 5.5218 1.1223 -0.6568 27 1 4.4992 2.5445 -0.3408 28 1 6.8579 2.8453 0.9272 29 1 6.2032 2.8786 3.6744 30 1 7.2262 1.4567 3.3587 31 1 8.9546 2.9224 2.3530 32 1 7.9320 4.3447 2.6684 33 1 11.2642 5.3620 3.8615 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814414488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:41 Heat of formation + Delta-G solvation = -1.142332 kcal Electronic energy + Delta-G solvation = -17699.620047 eV Core-core repulsion = 14593.746507 eV Total energy + Delta-G solvation = -3105.873540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.35307 -40.35538 -37.76576 -36.52005 -34.75410 -34.47838 -32.96117 -31.48232 -29.26707 -27.16320 -26.07034 -22.99142 -22.26910 -21.99855 -20.99989 -18.56793 -18.09537 -17.72596 -16.58803 -16.55488 -16.46775 -16.30442 -15.93880 -15.17528 -14.58799 -14.41805 -14.40426 -14.17466 -13.95652 -13.28382 -13.16870 -12.99277 -12.78411 -12.58766 -12.50735 -12.50356 -12.17630 -11.63812 -11.53726 -11.41470 -10.78613 -10.58880 -10.28916 -9.89761 -9.44613 -8.22729 -6.32593 0.51410 0.74441 1.40774 1.41209 1.42934 1.55450 1.83643 1.98333 2.37973 2.62091 3.11913 3.56478 3.88048 4.07071 4.28218 4.37886 4.45004 4.54746 4.59538 4.61026 4.71339 4.72868 4.90789 4.98534 5.17267 5.37892 5.56714 5.63142 5.83014 6.00390 6.19816 6.40306 6.78551 6.81465 7.36568 7.46062 8.89186 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034115 B = 0.003332 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.549496 B = 8400.762276 C = 8679.851717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.362 5.362 3 C 0.090 3.910 4 C -0.228 4.228 5 C -0.054 4.054 6 C 0.505 3.495 7 O -0.585 6.585 8 N -0.720 5.720 9 C 0.143 3.857 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.055 0.945 13 C 0.008 3.992 14 N -0.925 5.925 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.275 1.275 19 C 0.120 3.880 20 Cl -0.006 7.006 21 N -0.323 5.323 22 H 0.084 0.916 23 H 0.129 0.871 24 H 0.094 0.906 25 H 0.227 0.773 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.412 0.588 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.008 0.992 32 H 0.012 0.988 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 -5.264 -13.136 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.145 5.145 3 C -0.057 4.057 4 C -0.240 4.240 5 C -0.094 4.094 6 C 0.293 3.707 7 O -0.465 6.465 8 N -0.372 5.372 9 C 0.019 3.981 10 C -0.014 4.014 11 C -0.585 4.585 12 H 0.074 0.926 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.201 1.201 19 C -0.070 4.070 20 Cl 0.022 6.978 21 N -0.150 5.150 22 H 0.103 0.897 23 H 0.148 0.852 24 H 0.113 0.887 25 H 0.243 0.757 26 H 0.133 0.867 27 H 0.161 0.839 28 H 0.248 0.752 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.030 0.970 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.996 -6.680 -12.530 24.525 hybrid contribution 1.598 0.638 0.746 1.875 sum -18.398 -6.043 -11.784 22.669 Atomic orbital electron populations 1.22366 0.70604 1.06793 1.04888 1.48612 1.08000 1.02410 1.55511 1.22985 0.88945 0.95289 0.98467 1.19512 0.95851 0.90926 1.17744 1.19980 0.94764 1.02372 0.92293 1.21374 0.79655 0.77569 0.92137 1.90660 1.60688 1.46665 1.48524 1.46139 1.29050 1.50732 1.11258 1.21129 0.95468 0.98755 0.82781 1.19127 0.91634 0.94203 0.96447 1.21512 1.11752 1.30071 0.95154 0.92626 1.25842 0.96945 0.94868 1.01442 1.70053 1.20973 1.32044 1.33425 0.85430 0.78195 0.78115 0.79506 1.19162 1.20263 1.20079 1.22712 0.89056 0.91589 1.03691 1.98376 1.34781 1.67689 1.96951 1.77217 1.00420 1.10363 1.27010 0.89749 0.85233 0.88747 0.75694 0.86692 0.83924 0.75232 0.93826 0.94386 0.97358 0.96998 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.47 127.77 1.47 2.28 16 2 N -0.36 -7.17 4.01 -369.56 -1.48 -8.65 16 3 C 0.09 1.63 11.40 83.54 0.95 2.58 16 4 C -0.23 -5.52 4.60 -20.12 -0.09 -5.62 16 5 C -0.05 -1.14 6.04 29.10 0.18 -0.97 16 6 C 0.50 16.31 7.82 87.66 0.69 17.00 16 7 O -0.59 -24.41 16.03 -3.01 -0.05 -24.46 16 8 N -0.72 -24.22 5.56 -463.06 -2.57 -26.80 16 9 C 0.14 6.19 5.61 86.38 0.48 6.68 16 10 C 0.02 1.17 5.09 29.85 0.15 1.33 16 11 C -0.55 -30.78 9.11 25.60 0.23 -30.54 16 12 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 13 C 0.01 0.44 5.46 84.66 0.46 0.90 16 14 N -0.93 -54.14 13.29 21.45 0.28 -53.85 16 15 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 C 0.12 3.48 7.84 85.25 0.67 4.15 16 20 Cl -0.01 -0.16 29.16 -2.72 -0.08 -0.24 16 21 N -0.32 -9.17 12.58 -49.68 -0.62 -9.80 16 22 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.13 0.16 8.14 -2.38 -0.02 0.14 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 26 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.41 11.40 8.47 -92.71 -0.79 10.61 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -77.92 311.77 3.03 -74.89 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.34 Total: 5.24 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.19 Total: -2.22 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -4.40 Total: -99.10 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -77.92 3.03 -74.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814414488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.744 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds