Wall clock time and date at job start Mon Mar 30 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99861 * 2 1 4 4 C 1.50706 * 109.46974 * 270.00241 * 3 2 1 5 5 H 1.07999 * 120.00065 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99998 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00167 * 179.97438 * 6 4 3 8 8 Si 1.86809 * 120.00098 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.46927 * 89.99786 * 8 6 4 10 10 H 1.48496 * 109.46838 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46945 * 330.00017 * 8 6 4 12 12 C 1.34778 * 120.00237 * 180.02562 * 2 1 3 13 13 O 1.21273 * 120.00188 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99618 * 359.97438 * 12 2 1 15 15 C 1.50701 * 109.46672 * 180.02562 * 14 12 2 16 16 C 1.35306 * 126.04855 * 100.24607 * 15 14 12 17 17 N 1.34944 * 107.76573 * 180.13324 * 16 15 14 18 18 C 1.46506 * 126.02735 * 179.89872 * 17 16 15 19 19 N 1.40081 * 107.94720 * 359.63312 * 17 16 15 20 20 C 1.30891 * 108.20126 * 0.22504 * 19 17 16 21 21 Cl 1.73607 * 125.91253 * 179.97438 * 20 19 17 22 22 H 1.09009 * 109.46917 * 270.00014 * 1 2 3 23 23 H 1.08992 * 109.47373 * 29.99582 * 1 2 3 24 24 H 1.08998 * 109.47195 * 150.00610 * 1 2 3 25 25 H 1.08994 * 109.47339 * 30.00144 * 3 2 1 26 26 H 1.08997 * 109.47148 * 150.00728 * 3 2 1 27 27 H 0.97001 * 120.00175 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.47035 * 59.99996 * 14 12 2 29 29 H 1.09001 * 109.47171 * 299.99973 * 14 12 2 30 30 H 1.07997 * 126.11757 * 359.97438 * 16 15 14 31 31 H 1.09001 * 109.47060 * 269.71732 * 18 17 16 32 32 H 1.09004 * 109.47073 * 29.71221 * 18 17 16 33 33 H 1.09000 * 109.47212 * 149.71304 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.3463 3.2569 -2.9128 8 14 3.7350 3.9281 -0.2530 9 1 5.1083 3.5058 0.1223 10 1 3.7508 5.3548 -0.6643 11 1 2.8294 3.7586 0.9116 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3647 -3.6177 -0.0005 16 6 2.7343 -4.3493 1.0760 17 7 3.6264 -5.2723 0.6600 18 6 4.2865 -6.2735 1.5016 19 7 3.8055 -5.1084 -0.7196 20 6 3.0488 -4.1163 -1.1151 21 17 2.9171 -3.5214 -2.7408 22 1 -0.3633 0.0000 1.0278 23 1 -0.3634 0.8899 -0.5137 24 1 -0.3633 -0.8900 -0.5137 25 1 1.6084 2.0284 0.5138 26 1 3.1499 1.1384 0.5137 27 1 3.8238 4.0824 -3.0900 28 1 0.7584 -2.5298 -0.8902 29 1 0.7591 -2.5302 0.8897 30 1 2.3806 -4.2165 2.0878 31 1 5.2197 -5.8644 1.8888 32 1 3.6329 -6.5372 2.3331 33 1 4.4981 -7.1637 0.9093 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814621244.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:44 Heat of formation + Delta-G solvation = 18.799137 kcal Electronic energy + Delta-G solvation = -18503.299913 eV Core-core repulsion = 15398.291101 eV Total energy + Delta-G solvation = -3105.008813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.34016 -40.36773 -37.75385 -36.51035 -34.73721 -34.39517 -32.90239 -30.66909 -29.02285 -27.28263 -26.62864 -24.20682 -22.25019 -21.67384 -19.88624 -19.09907 -17.94388 -17.79193 -16.92073 -16.51288 -16.37238 -16.05537 -15.68238 -14.78169 -14.68767 -14.31751 -14.24636 -13.92032 -13.73134 -13.55816 -13.28873 -13.07130 -12.89296 -12.64028 -12.57836 -12.47889 -12.37995 -11.97048 -11.70957 -11.53352 -10.80600 -10.62212 -10.26552 -9.41627 -9.26957 -8.30796 -6.35150 0.53246 0.75738 1.33033 1.37945 1.42940 1.46439 1.96935 2.01300 2.33248 2.57780 3.03963 3.57625 3.88773 4.02009 4.25314 4.35757 4.45680 4.51325 4.61418 4.71131 4.72503 4.75499 4.88404 5.00301 5.02521 5.09256 5.18841 5.51032 5.72185 6.03291 6.29679 6.40959 6.66912 6.84123 7.26191 7.58534 8.86565 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.005190 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.914512 B = 5393.792363 C = 5616.651198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.225 3.775 4 C -0.532 4.532 5 H 0.026 0.974 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.276 1.276 11 H -0.234 1.234 12 C 0.499 3.501 13 O -0.588 6.588 14 C -0.048 4.048 15 C -0.228 4.228 16 C 0.093 3.907 17 N -0.362 5.362 18 C 0.093 3.907 19 N -0.325 5.325 20 C 0.117 3.883 21 Cl -0.012 7.012 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.016 0.984 27 H 0.267 0.733 28 H 0.106 0.894 29 H 0.146 0.854 30 H 0.232 0.768 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -18.076 14.314 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C 0.102 3.898 4 C -0.571 4.571 5 H 0.044 0.956 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.157 1.157 12 C 0.288 3.712 13 O -0.469 6.469 14 C -0.089 4.089 15 C -0.240 4.240 16 C -0.054 4.054 17 N -0.145 5.145 18 C -0.046 4.046 19 N -0.152 5.152 20 C -0.073 4.073 21 Cl 0.016 6.984 22 H 0.103 0.897 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.164 0.836 30 H 0.248 0.752 31 H 0.102 0.898 32 H 0.151 0.849 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.806 -18.890 13.815 24.112 hybrid contribution 0.263 1.503 -0.534 1.617 sum -5.543 -17.386 13.281 22.570 Atomic orbital electron populations 1.21995 0.77584 1.03881 1.03174 1.47972 1.08429 1.05804 1.72103 1.19280 0.92701 0.82877 0.94949 1.21618 1.36389 1.06448 0.92656 0.95574 1.25886 0.95420 0.99079 0.98596 1.70068 1.42969 1.24514 1.21397 0.85699 0.79452 0.77648 0.80016 1.20548 1.20096 1.15684 1.21347 0.87911 0.86337 0.75633 1.90637 1.16631 1.87998 1.51608 1.19992 0.95927 0.86018 1.06947 1.19577 1.08785 1.04191 0.91490 1.22972 0.91897 0.89722 1.00803 1.48624 1.33670 1.27931 1.04287 1.22376 0.99164 0.89454 0.93604 1.77204 1.23858 1.20978 0.93117 1.22737 0.99042 0.96673 0.88809 1.98391 1.96830 1.85934 1.17294 0.89652 0.92054 0.89204 0.93154 0.96594 0.92432 0.87624 0.83591 0.75220 0.89845 0.84920 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.24 127.77 1.31 3.35 16 2 N -0.61 -24.43 2.86 -851.13 -2.43 -26.86 16 3 C 0.22 11.03 4.23 85.63 0.36 11.39 16 4 C -0.53 -32.08 9.94 25.60 0.25 -31.83 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.46 5.47 84.65 0.46 0.92 16 7 N -0.95 -61.66 13.96 21.44 0.30 -61.37 16 8 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 9 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.23 -9.88 6.54 99.48 0.65 -9.23 16 12 C 0.50 19.91 7.67 87.66 0.67 20.58 16 13 O -0.59 -30.00 15.61 -3.01 -0.05 -30.05 16 14 C -0.05 -1.29 4.59 29.10 0.13 -1.16 16 15 C -0.23 -6.64 4.60 -20.12 -0.09 -6.73 16 16 C 0.09 1.97 11.40 83.54 0.95 2.92 16 17 N -0.36 -8.34 4.01 -369.56 -1.48 -9.82 16 18 C 0.09 1.03 11.47 127.77 1.47 2.49 16 19 N -0.32 -10.70 12.58 -49.68 -0.62 -11.33 16 20 C 0.12 4.10 7.84 85.25 0.67 4.77 16 21 Cl -0.01 -0.45 29.16 -2.72 -0.08 -0.53 16 22 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 24 H 0.09 1.89 6.44 -2.39 -0.02 1.88 16 25 H 0.05 2.24 7.13 -2.39 -0.02 2.23 16 26 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 27 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 28 H 0.11 2.66 7.40 -2.39 -0.02 2.64 16 29 H 0.15 2.35 8.10 -2.39 -0.02 2.33 16 30 H 0.23 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -89.97 304.83 4.77 -85.20 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.06 Total: 0.81 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 6.19 Total: 6.71 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.24 Total: -109.38 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.05 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -89.97 4.77 -85.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814621244.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.996 kcal (2) G-P(sol) polarization free energy of solvation -89.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds