Wall clock time and date at job start Mon Mar 30 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46912 * 300.00480 * 3 2 1 6 6 H 1.48505 * 109.46914 * 60.00105 * 3 2 1 7 7 C 1.38985 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99601 * 179.97438 * 7 2 1 9 9 N 1.37318 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.36496 * 126.07175 * 180.02562 * 9 7 2 11 11 C 1.35680 * 107.50940 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07777 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99355 * 180.02562 * 12 11 10 14 14 O 1.21301 * 120.00552 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99906 * 179.97438 * 13 12 11 16 16 C 1.53005 * 115.54643 * 34.41776 * 15 13 12 17 17 F 1.39899 * 109.46709 * 85.58248 * 16 15 13 18 18 F 1.39898 * 109.47127 * 205.58241 * 16 15 13 19 19 C 1.52995 * 117.50181 * 248.75034 * 15 13 12 20 20 C 1.52993 * 117.50081 * 180.08799 * 15 13 12 21 21 C 1.40641 * 107.83550 * 0.26015 * 11 10 9 22 22 N 1.30909 * 108.38952 * 359.55470 * 21 11 10 23 23 H 0.96993 * 120.00225 * 359.97438 * 1 2 3 24 24 H 1.08002 * 126.24081 * 0.03700 * 10 9 7 25 25 H 0.96991 * 120.00472 * 0.02562 * 12 11 10 26 26 H 1.08999 * 109.47068 * 325.58385 * 16 15 13 27 27 H 1.09000 * 117.49859 * 0.02562 * 19 15 13 28 28 H 1.08999 * 117.49900 * 145.01759 * 19 15 13 29 29 H 1.08998 * 117.50372 * 214.98309 * 20 15 13 30 30 H 1.09006 * 117.50059 * 359.97438 * 20 15 13 31 31 H 1.08003 * 125.80738 * 179.69698 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8882 2.3964 1.2126 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6405 -0.0005 11 6 0.8578 -4.5385 -0.0011 12 7 0.9892 -5.9383 -0.0018 13 6 -0.1100 -6.7182 -0.0029 14 8 -1.2126 -6.2125 -0.0037 15 6 0.0307 -8.2187 -0.0042 16 6 1.2259 -8.7700 0.7759 17 9 0.8771 -8.9138 2.1231 18 9 1.5897 -10.0155 0.2529 19 6 -0.3927 -8.9668 -1.2698 20 6 -1.2545 -9.0487 -0.0075 21 6 -0.3511 -3.8199 -0.0076 22 7 -0.0715 -2.5411 -0.0011 23 1 -0.4850 0.8400 0.0004 24 1 2.9302 -3.8708 0.0000 25 1 1.8708 -6.3427 -0.0016 26 1 2.0655 -8.0803 0.6896 27 1 -0.7726 -8.3738 -2.1017 28 1 0.1800 -9.8520 -1.5465 29 1 -1.2486 -9.9878 0.5459 30 1 -2.2019 -8.5096 -0.0082 31 1 -1.3418 -4.2501 -0.0142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843778314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:58 Heat of formation + Delta-G solvation = -23.493655 kcal Electronic energy + Delta-G solvation = -20311.434074 eV Core-core repulsion = 16652.794628 eV Total energy + Delta-G solvation = -3658.639446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.17422 -47.14764 -40.18946 -39.07149 -36.39963 -34.37009 -33.23604 -30.31660 -28.51114 -27.18636 -25.04237 -23.20411 -22.70174 -21.00117 -19.86884 -19.42188 -18.26532 -17.65526 -17.30093 -16.94259 -15.79193 -15.46397 -15.18475 -14.63285 -14.45769 -14.12193 -13.91385 -13.60209 -13.49402 -13.18018 -12.99106 -12.75335 -11.88093 -11.72463 -11.57177 -11.47562 -11.31577 -10.98586 -10.80300 -10.61918 -10.52911 -10.26389 -9.38254 -9.23312 -8.86639 -8.11492 -6.78758 -6.59816 -4.27636 2.48923 2.94492 3.02633 3.09108 3.26595 3.33059 3.51226 3.70435 3.81883 3.98146 4.12617 4.37169 4.49687 4.60298 4.89306 4.94762 4.98358 5.07270 5.42457 5.46083 5.71370 5.96608 6.18194 6.37483 6.81227 6.89492 7.00552 7.17670 7.80724 8.04243 8.20041 8.53467 8.72631 9.32487 9.61270 10.36206 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.003994 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.475306 B = 7008.935214 C = 7337.300744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.323 4.323 8 H 0.118 0.882 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.064 4.064 12 N -0.619 5.619 13 C 0.541 3.459 14 O -0.522 6.522 15 C -0.232 4.232 16 C 0.304 3.696 17 F -0.195 7.195 18 F -0.199 7.199 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.030 4.030 22 N -0.260 5.260 23 H 0.275 0.725 24 H 0.146 0.854 25 H 0.393 0.607 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -14.422 -0.959 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.092 4.908 10 C -0.233 4.233 11 C -0.169 4.169 12 N -0.261 5.261 13 C 0.326 3.674 14 O -0.398 6.398 15 C -0.236 4.236 16 C 0.250 3.750 17 F -0.176 7.176 18 F -0.180 7.180 19 C -0.168 4.168 20 C -0.162 4.162 21 C -0.206 4.206 22 N -0.091 5.091 23 H 0.086 0.914 24 H 0.164 0.836 25 H 0.227 0.773 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.598 -12.724 -0.929 13.019 hybrid contribution 1.418 -0.448 0.146 1.494 sum 4.016 -13.172 -0.783 13.792 Atomic orbital electron populations 1.70221 1.06163 1.27982 1.35145 1.25652 0.95711 1.00320 0.95417 0.85753 0.79626 0.80185 0.78521 1.18663 1.19877 1.19867 1.19944 0.91719 0.80505 1.53361 0.86491 1.44570 1.04054 1.03324 1.38838 1.21246 0.96816 0.85354 1.19930 1.17238 0.94482 0.80798 1.24410 1.42432 1.07727 1.04804 1.71125 1.18665 0.84757 0.85327 0.78658 1.90618 1.25718 1.73549 1.49894 1.22606 0.99823 0.94150 1.07038 1.20992 0.95920 0.82315 0.75752 1.93025 1.93658 1.96195 1.34703 1.92968 1.92609 1.45992 1.86471 1.23154 1.01772 1.01003 0.90874 1.23045 0.93828 0.99741 0.99584 1.24093 0.97947 0.90750 1.07800 1.78272 0.90119 1.14985 1.25734 0.91440 0.83616 0.77295 0.86846 0.87070 0.86781 0.87537 0.86280 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.32 11.81 55.49 0.66 -20.67 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.70 29.55 -169.99 -5.02 13.67 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 8 H 0.12 2.73 7.83 -52.48 -0.41 2.32 16 9 N -0.14 -3.82 3.74 -11.41 -0.04 -3.86 16 10 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 11 C -0.06 -1.45 6.90 -83.84 -0.58 -2.03 16 12 N -0.62 -10.70 5.37 -10.00 -0.05 -10.76 16 13 C 0.54 9.30 7.36 -10.98 -0.08 9.22 16 14 O -0.52 -10.97 13.41 5.54 0.07 -10.89 16 15 C -0.23 -2.91 2.36 -155.66 -0.37 -3.28 16 16 C 0.30 3.33 5.27 37.16 0.20 3.53 16 17 F -0.19 -2.55 17.29 2.25 0.04 -2.51 16 18 F -0.20 -2.11 15.91 2.25 0.04 -2.07 16 19 C -0.13 -1.34 9.63 -26.70 -0.26 -1.59 16 20 C -0.12 -1.40 9.69 -26.70 -0.26 -1.66 16 21 C -0.03 -0.80 10.85 -17.04 -0.18 -0.98 16 22 N -0.26 -7.52 10.40 30.80 0.32 -7.20 16 23 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 25 H 0.39 5.12 7.13 -40.82 -0.29 4.83 16 26 H 0.11 0.97 6.39 -51.93 -0.33 0.64 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.11 0.95 7.22 -51.93 -0.37 0.58 16 29 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.12 1.47 7.67 -51.93 -0.40 1.07 16 31 H 0.18 4.51 5.92 -52.48 -0.31 4.20 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -32.87 282.91 -4.22 -37.09 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -2.52 Total: 9.32 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.97 Total: -6.39 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.88 Total: -42.48 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.87 -4.22 -37.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843778314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.599 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds