Wall clock time and date at job start Mon Mar 30 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86797 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47374 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46912 * 300.00480 * 3 2 1 6 6 H 1.48505 * 109.46914 * 60.00105 * 3 2 1 7 7 C 1.38985 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99601 * 179.97438 * 7 2 1 9 9 N 1.37318 * 120.00327 * 359.97438 * 7 2 1 10 10 C 1.36496 * 126.07175 * 180.02562 * 9 7 2 11 11 C 1.35680 * 107.50940 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07777 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99355 * 180.02562 * 12 11 10 14 14 O 1.21301 * 120.00552 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99906 * 179.97438 * 13 12 11 16 16 C 1.53005 * 115.54643 * 34.41776 * 15 13 12 17 17 F 1.39899 * 109.46709 * 85.58248 * 16 15 13 18 18 F 1.39898 * 109.47127 * 205.58241 * 16 15 13 19 19 C 1.52995 * 117.50181 * 248.75034 * 15 13 12 20 20 C 1.52993 * 117.50081 * 180.08799 * 15 13 12 21 21 C 1.40641 * 107.83550 * 0.26015 * 11 10 9 22 22 N 1.30909 * 108.38952 * 359.55470 * 21 11 10 23 23 H 0.96993 * 120.00225 * 359.97438 * 1 2 3 24 24 H 1.08002 * 126.24081 * 0.03700 * 10 9 7 25 25 H 0.96991 * 120.00472 * 0.02562 * 12 11 10 26 26 H 1.08999 * 109.47068 * 325.58385 * 16 15 13 27 27 H 1.09000 * 117.49859 * 0.02562 * 19 15 13 28 28 H 1.08999 * 117.49900 * 145.01759 * 19 15 13 29 29 H 1.08998 * 117.50372 * 214.98309 * 20 15 13 30 30 H 1.09006 * 117.50059 * 359.97438 * 20 15 13 31 31 H 1.08003 * 125.80738 * 179.69698 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8882 2.3964 1.2126 7 6 2.0079 -1.2037 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6405 -0.0005 11 6 0.8578 -4.5385 -0.0011 12 7 0.9892 -5.9383 -0.0018 13 6 -0.1100 -6.7182 -0.0029 14 8 -1.2126 -6.2125 -0.0037 15 6 0.0307 -8.2187 -0.0042 16 6 1.2259 -8.7700 0.7759 17 9 0.8771 -8.9138 2.1231 18 9 1.5897 -10.0155 0.2529 19 6 -0.3927 -8.9668 -1.2698 20 6 -1.2545 -9.0487 -0.0075 21 6 -0.3511 -3.8199 -0.0076 22 7 -0.0715 -2.5411 -0.0011 23 1 -0.4850 0.8400 0.0004 24 1 2.9302 -3.8708 0.0000 25 1 1.8708 -6.3427 -0.0016 26 1 2.0655 -8.0803 0.6896 27 1 -0.7726 -8.3738 -2.1017 28 1 0.1800 -9.8520 -1.5465 29 1 -1.2486 -9.9878 0.5459 30 1 -2.2019 -8.5096 -0.0082 31 1 -1.3418 -4.2501 -0.0142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843778314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:58 Heat of formation + Delta-G solvation = -45.713305 kcal Electronic energy + Delta-G solvation = -20312.397590 eV Core-core repulsion = 16652.794628 eV Total energy + Delta-G solvation = -3659.602962 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.05331 -48.03687 -41.83797 -40.66710 -37.54022 -36.02076 -35.04300 -32.27723 -30.08365 -28.42722 -26.84759 -24.55033 -23.56553 -22.85901 -21.47610 -20.88848 -19.54227 -19.12675 -18.18983 -18.04762 -17.46490 -17.01590 -16.63491 -15.98776 -15.93933 -15.50145 -15.05854 -14.99407 -14.83329 -14.60365 -14.36510 -13.76826 -13.50020 -13.35299 -12.94861 -12.87516 -12.73196 -12.45774 -12.02586 -11.97910 -11.72273 -11.50998 -11.06526 -10.91805 -10.79097 -10.12628 -8.59122 -8.48030 -6.26009 1.09066 1.39277 1.40558 1.59621 1.80622 1.90949 2.19096 2.30601 2.43890 2.74142 2.86595 3.08292 3.11168 3.22138 3.61057 3.71577 4.01483 4.15195 4.41310 4.50666 4.60004 4.63752 4.86090 4.99047 5.03983 5.10249 5.26554 5.37214 5.94257 6.27111 6.59942 6.71642 7.23710 7.44421 7.65260 8.51610 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.043301 B = 0.003994 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.475306 B = 7008.935214 C = 7337.300744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.006 4.006 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.353 4.353 8 H 0.143 0.857 9 N -0.167 5.167 10 C -0.077 4.077 11 C -0.049 4.049 12 N -0.610 5.610 13 C 0.541 3.459 14 O -0.565 6.565 15 C -0.241 4.241 16 C 0.309 3.691 17 F -0.208 7.208 18 F -0.192 7.192 19 C -0.107 4.107 20 C -0.128 4.128 21 C -0.058 4.058 22 N -0.311 5.311 23 H 0.276 0.724 24 H 0.191 0.809 25 H 0.417 0.583 26 H 0.142 0.858 27 H 0.106 0.894 28 H 0.143 0.857 29 H 0.127 0.873 30 H 0.101 0.899 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 -15.852 -1.232 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.160 0.840 9 N 0.065 4.935 10 C -0.227 4.227 11 C -0.155 4.155 12 N -0.255 5.255 13 C 0.328 3.672 14 O -0.444 6.444 15 C -0.245 4.245 16 C 0.255 3.745 17 F -0.189 7.189 18 F -0.174 7.174 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.233 4.233 22 N -0.143 5.143 23 H 0.086 0.914 24 H 0.208 0.792 25 H 0.255 0.745 26 H 0.159 0.841 27 H 0.125 0.875 28 H 0.160 0.840 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.310 -14.220 -1.204 15.226 hybrid contribution 0.534 -0.192 0.216 0.607 sum 5.844 -14.412 -0.988 15.583 Atomic orbital electron populations 1.70400 1.08489 1.29084 1.37330 1.26883 0.96441 1.04367 0.94075 0.84531 0.79109 0.74374 0.78159 1.16211 1.19812 1.19867 1.20695 0.93034 0.80818 1.53887 0.83954 1.44861 1.03594 1.04881 1.40199 1.22019 0.98876 0.84081 1.17726 1.17299 0.92963 0.83307 1.21919 1.42354 1.09384 1.02621 1.71167 1.19450 0.83841 0.87272 0.76671 1.90608 1.27483 1.74956 1.51322 1.22457 1.01665 0.90741 1.09668 1.21081 0.95794 0.82956 0.74650 1.93007 1.93823 1.96302 1.35798 1.92982 1.92397 1.45681 1.86297 1.23290 1.00506 1.00905 0.89717 1.23135 0.92653 0.99933 1.00801 1.24142 0.98980 0.90960 1.09196 1.78167 0.92121 1.16511 1.27505 0.91389 0.79158 0.74472 0.84091 0.87535 0.83957 0.85503 0.88026 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.48 11.81 21.66 0.26 -47.22 16 2 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 3 Si 1.02 38.10 29.55 68.60 2.03 40.13 16 4 H -0.24 -7.94 7.11 99.48 0.71 -7.24 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.35 -18.43 10.25 84.01 0.86 -17.57 16 8 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 9 N -0.17 -9.13 3.74 -190.01 -0.71 -9.84 16 10 C -0.08 -3.44 11.49 83.37 0.96 -2.48 16 11 C -0.05 -2.19 6.90 37.73 0.26 -1.93 16 12 N -0.61 -20.05 5.37 -303.92 -1.63 -21.68 16 13 C 0.54 18.08 7.36 87.66 0.65 18.72 16 14 O -0.56 -24.27 13.41 -3.10 -0.04 -24.31 16 15 C -0.24 -5.50 2.36 -52.93 -0.13 -5.63 16 16 C 0.31 5.76 5.27 71.98 0.38 6.14 16 17 F -0.21 -4.94 17.29 44.97 0.78 -4.16 16 18 F -0.19 -3.32 15.91 44.97 0.72 -2.60 16 19 C -0.11 -1.89 9.63 30.62 0.29 -1.59 16 20 C -0.13 -2.65 9.69 30.62 0.30 -2.36 16 21 C -0.06 -3.12 10.85 85.42 0.93 -2.19 16 22 N -0.31 -18.70 10.40 -56.47 -0.59 -19.29 16 23 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.19 6.55 8.06 -2.91 -0.02 6.53 16 25 H 0.42 9.49 7.13 -92.71 -0.66 8.83 16 26 H 0.14 1.84 6.39 -2.39 -0.02 1.83 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.14 1.76 7.22 -2.39 -0.02 1.74 16 29 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 2.50 7.67 -2.38 -0.02 2.48 16 31 H 0.17 9.07 5.92 -2.91 -0.02 9.06 16 Total: -1.00 -75.26 282.91 6.31 -68.95 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.54 Total: 28.75 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.96 Total: -8.73 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -2.67 Total: -98.03 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.04 Total: -24.31 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 1.49 Total: -6.76 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -75.26 6.31 -68.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843778314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.239 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds