Wall clock time and date at job start Mon Mar 30 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47115 * 2 1 4 4 C 1.50699 * 109.47089 * 120.00465 * 2 1 3 5 5 H 1.07994 * 120.00588 * 120.00568 * 4 2 1 6 6 C 1.37877 * 119.99779 * 299.99328 * 4 2 1 7 7 N 1.31516 * 120.00274 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46764 * 90.00321 * 8 6 4 10 10 H 1.48493 * 109.47640 * 210.00376 * 8 6 4 11 11 H 1.48497 * 109.47023 * 330.00699 * 8 6 4 12 12 C 1.50706 * 109.46900 * 239.99918 * 2 1 3 13 13 O 1.20824 * 120.00104 * 239.99737 * 12 2 1 14 14 O 1.34230 * 119.99717 * 60.00293 * 12 2 1 15 15 C 1.45199 * 116.99614 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46928 * 179.97438 * 15 14 12 17 17 C 1.38528 * 120.78582 * 359.71776 * 16 15 14 18 18 C 1.38506 * 119.16860 * 179.77871 * 17 16 15 19 19 F 1.35106 * 119.62434 * 180.27204 * 18 17 16 20 20 N 1.32037 * 120.75517 * 0.50665 * 18 17 16 21 21 C 1.31907 * 121.71126 * 359.74489 * 20 18 17 22 22 C 1.38366 * 120.76288 * 0.02562 * 21 20 18 23 23 F 1.35095 * 120.41550 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47349 * 59.99790 * 1 2 3 25 25 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47153 * 299.99466 * 1 2 3 27 27 H 0.96995 * 120.00517 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47177 * 299.99820 * 15 14 12 29 29 H 1.09001 * 109.47399 * 59.99991 * 15 14 12 30 30 H 1.08010 * 120.41474 * 0.02562 * 17 16 15 31 31 H 1.08005 * 119.61695 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6306 -0.5440 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 6 2.0323 -0.7105 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7080 -0.2518 -2.4496 15 6 2.2276 -0.9857 -3.5897 16 6 1.7625 -0.3292 -4.8640 17 6 0.9575 0.7975 -4.8282 18 6 0.5533 1.3765 -6.0198 19 9 -0.2275 2.4789 -5.9956 20 7 0.9184 0.8608 -7.1791 21 6 1.6800 -0.2139 -7.2508 22 6 2.1258 -0.8433 -6.1021 23 9 2.9051 -1.9438 -6.1837 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7083 1.1608 3.4844 28 1 3.3171 -0.9846 -3.5566 29 1 1.8641 -2.0128 -3.5569 30 1 0.6521 1.2216 -3.8829 31 1 1.9581 -0.6074 -8.2174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851021157.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:18 Heat of formation + Delta-G solvation = -141.633034 kcal Electronic energy + Delta-G solvation = -20004.413607 eV Core-core repulsion = 16308.358502 eV Total energy + Delta-G solvation = -3696.055105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.32636 -49.22927 -40.44497 -39.63588 -36.21121 -33.99895 -33.57545 -30.83899 -30.69779 -27.76179 -25.29047 -24.29096 -23.25217 -22.31809 -20.04665 -18.29898 -17.93554 -17.85727 -16.81014 -16.69479 -16.05765 -16.02068 -15.74930 -15.55504 -14.95215 -14.64626 -14.41707 -13.75881 -13.54243 -13.24185 -13.02058 -12.95313 -12.68930 -12.10434 -11.63355 -11.11990 -10.90689 -10.80455 -10.70041 -10.40075 -10.18610 -10.11967 -9.88650 -9.30961 -9.15196 -9.14189 -8.52484 -6.17948 -4.24056 0.38316 0.54606 2.99048 3.03197 3.12215 3.17694 3.26130 3.32343 3.39115 3.64318 4.00812 4.30856 4.34960 4.40255 4.97276 5.14266 5.15326 5.19132 5.29397 5.37873 5.60481 5.97675 6.20284 6.56055 6.73937 6.76582 6.98631 7.11322 7.32709 7.65659 7.85389 8.04344 8.65277 8.84467 9.42209 10.89347 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.004170 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.831945 B = 6713.289368 C = 7531.503707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.468 3.532 13 O -0.511 6.511 14 O -0.363 6.363 15 C 0.101 3.899 16 C -0.044 4.044 17 C -0.141 4.141 18 C 0.301 3.699 19 F -0.104 7.104 20 N -0.492 5.492 21 C 0.114 3.886 22 C 0.042 3.958 23 F -0.120 7.120 24 H 0.023 0.977 25 H 0.032 0.968 26 H 0.097 0.903 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.173 0.827 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 -0.252 -16.403 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.397 6.397 14 O -0.282 6.282 15 C 0.026 3.974 16 C -0.053 4.053 17 C -0.162 4.162 18 C 0.148 3.852 19 F -0.083 7.083 20 N -0.206 5.206 21 C -0.045 4.045 22 C 0.020 3.980 23 F -0.099 7.099 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.190 0.810 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.351 -0.037 -16.992 16.996 hybrid contribution 0.645 -0.880 1.418 1.789 sum 0.294 -0.917 -15.574 15.603 Atomic orbital electron populations 1.21752 0.95446 1.00169 1.01857 1.18808 0.94942 0.97034 0.85154 0.91599 1.21114 1.32171 1.13386 0.88693 0.90590 1.24932 0.94798 0.94994 0.99163 1.69866 1.36279 1.22763 1.24015 0.86365 0.78541 0.80160 0.81672 1.20477 1.21077 1.19653 1.25502 0.76569 0.83331 0.83337 1.90526 1.36128 1.26577 1.86451 1.86586 1.70623 1.55697 1.15299 1.21421 0.99626 0.95195 0.81125 1.20146 0.96041 0.95175 0.93923 1.21782 0.98544 0.96008 0.99871 1.18119 0.92028 0.85515 0.89565 1.91664 1.70952 1.48925 1.96770 1.67039 1.13397 1.11987 1.28145 1.22532 0.93542 0.90381 0.98024 1.18429 0.97369 0.87975 0.94249 1.91556 1.71703 1.49709 1.96931 0.95762 0.94888 0.88419 0.92585 0.88866 0.88883 0.80964 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.90 37.16 0.33 -2.67 16 2 C 0.06 1.43 2.74 -92.92 -0.25 1.18 16 3 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.52 -13.95 8.37 -34.44 -0.29 -14.24 16 5 H 0.08 2.15 6.76 -52.49 -0.35 1.79 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.04 11.32 55.43 0.63 -23.42 16 8 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.47 10.22 7.25 36.01 0.26 10.48 16 13 O -0.51 -12.24 15.21 -18.75 -0.29 -12.53 16 14 O -0.36 -6.42 8.70 -39.26 -0.34 -6.77 16 15 C 0.10 1.44 5.53 36.01 0.20 1.64 16 16 C -0.04 -0.54 5.92 -104.27 -0.62 -1.16 16 17 C -0.14 -1.71 9.42 -39.38 -0.37 -2.08 16 18 C 0.30 3.66 8.41 -17.36 -0.15 3.52 16 19 F -0.10 -1.30 17.29 2.25 0.04 -1.26 16 20 N -0.49 -5.77 10.37 -13.54 -0.14 -5.91 16 21 C 0.11 1.08 11.17 -17.47 -0.20 0.88 16 22 C 0.04 0.44 7.29 -39.29 -0.29 0.16 16 23 F -0.12 -1.29 16.89 2.25 0.04 -1.26 16 24 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 30 H 0.17 2.10 7.10 -52.48 -0.37 1.73 16 31 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 287.89 15.07 4.34 4.34 Total: -1.00 -28.64 287.89 -4.92 -33.56 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -2.71 Total: -1.94 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.46 Total: -0.71 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.49 Total: -29.33 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.63 Total: -19.29 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.64 -4.92 -33.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851021157.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.076 kcal (2) G-P(sol) polarization free energy of solvation -28.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds