Wall clock time and date at job start Mon Mar 30 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47115 * 2 1 4 4 C 1.50699 * 109.47089 * 120.00465 * 2 1 3 5 5 H 1.07994 * 120.00588 * 120.00568 * 4 2 1 6 6 C 1.37877 * 119.99779 * 299.99328 * 4 2 1 7 7 N 1.31516 * 120.00274 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00271 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.46764 * 90.00321 * 8 6 4 10 10 H 1.48493 * 109.47640 * 210.00376 * 8 6 4 11 11 H 1.48497 * 109.47023 * 330.00699 * 8 6 4 12 12 C 1.50706 * 109.46900 * 239.99918 * 2 1 3 13 13 O 1.20824 * 120.00104 * 239.99737 * 12 2 1 14 14 O 1.34230 * 119.99717 * 60.00293 * 12 2 1 15 15 C 1.45199 * 116.99614 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46928 * 179.97438 * 15 14 12 17 17 C 1.38528 * 120.78582 * 359.71776 * 16 15 14 18 18 C 1.38506 * 119.16860 * 179.77871 * 17 16 15 19 19 F 1.35106 * 119.62434 * 180.27204 * 18 17 16 20 20 N 1.32037 * 120.75517 * 0.50665 * 18 17 16 21 21 C 1.31907 * 121.71126 * 359.74489 * 20 18 17 22 22 C 1.38366 * 120.76288 * 0.02562 * 21 20 18 23 23 F 1.35095 * 120.41550 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47349 * 59.99790 * 1 2 3 25 25 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47153 * 299.99466 * 1 2 3 27 27 H 0.96995 * 120.00517 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47177 * 299.99820 * 15 14 12 29 29 H 1.09001 * 109.47399 * 59.99991 * 15 14 12 30 30 H 1.08010 * 120.41474 * 0.02562 * 17 16 15 31 31 H 1.08005 * 119.61695 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6306 -0.5440 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 6 2.0323 -0.7105 -1.2305 13 8 2.7270 -1.6928 -1.1197 14 8 1.7080 -0.2518 -2.4496 15 6 2.2276 -0.9857 -3.5897 16 6 1.7625 -0.3292 -4.8640 17 6 0.9575 0.7975 -4.8282 18 6 0.5533 1.3765 -6.0198 19 9 -0.2275 2.4789 -5.9956 20 7 0.9184 0.8608 -7.1791 21 6 1.6800 -0.2139 -7.2508 22 6 2.1258 -0.8433 -6.1021 23 9 2.9051 -1.9438 -6.1837 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7083 1.1608 3.4844 28 1 3.3171 -0.9846 -3.5566 29 1 1.8641 -2.0128 -3.5569 30 1 0.6521 1.2216 -3.8829 31 1 1.9581 -0.6074 -8.2174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851021157.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:18 Heat of formation + Delta-G solvation = -157.299273 kcal Electronic energy + Delta-G solvation = -20005.092946 eV Core-core repulsion = 16308.358502 eV Total energy + Delta-G solvation = -3696.734444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.19476 -50.17461 -41.65129 -40.98689 -37.76822 -35.93992 -34.66240 -32.64273 -31.70859 -28.91351 -27.27635 -25.46586 -24.60882 -23.47678 -21.70616 -19.32344 -18.96332 -18.77955 -18.54400 -17.83079 -17.79511 -17.41057 -17.18015 -16.64166 -16.21290 -15.76490 -15.52764 -15.09611 -14.89817 -14.59378 -14.39879 -13.94022 -13.88253 -13.65285 -13.30538 -12.97825 -12.77610 -12.61874 -12.31512 -12.11247 -12.06268 -11.14254 -11.11008 -11.05363 -10.93190 -10.53557 -10.02345 -8.20456 -6.33542 -0.51805 -0.34915 1.36949 1.43083 1.43560 1.52106 1.63190 2.15066 2.29052 2.42868 2.73299 2.99012 3.10326 3.43875 3.46357 3.97940 4.01995 4.10795 4.24262 4.29567 4.60433 4.68606 4.73619 4.89381 4.99937 5.29926 5.32262 5.43549 5.68678 5.88484 6.10252 6.24997 6.72798 6.95623 7.35660 8.85697 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.004170 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.831945 B = 6713.289368 C = 7531.503707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.478 3.522 13 O -0.536 6.536 14 O -0.354 6.354 15 C 0.099 3.901 16 C -0.051 4.051 17 C -0.146 4.146 18 C 0.295 3.705 19 F -0.109 7.109 20 N -0.502 5.502 21 C 0.131 3.869 22 C 0.049 3.951 23 F -0.118 7.118 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.268 0.732 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.085 -0.618 -17.657 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.032 3.968 3 H 0.073 0.927 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.324 3.676 13 O -0.425 6.425 14 O -0.271 6.271 15 C 0.025 3.975 16 C -0.059 4.059 17 C -0.167 4.167 18 C 0.143 3.857 19 F -0.088 7.088 20 N -0.216 5.216 21 C -0.027 4.027 22 C 0.027 3.973 23 F -0.097 7.097 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.185 0.815 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.260 -0.380 -18.264 18.270 hybrid contribution 0.627 -0.763 1.677 1.947 sum 0.368 -1.143 -16.587 16.630 Atomic orbital electron populations 1.21584 0.94212 1.00020 1.02213 1.18709 0.95984 0.96308 0.85780 0.92695 1.21259 1.32683 1.13350 0.90467 0.92458 1.25599 0.94868 0.95627 1.01496 1.69947 1.36522 1.23373 1.24760 0.85503 0.78352 0.78809 0.78699 1.19920 1.20025 1.20019 1.24869 0.75992 0.82583 0.84190 1.90510 1.37242 1.27609 1.87147 1.86508 1.70137 1.55570 1.14922 1.21631 1.00010 0.95371 0.80498 1.19979 0.96896 0.95555 0.93506 1.21676 0.98976 0.96206 0.99821 1.18137 0.92272 0.85569 0.89771 1.91647 1.71150 1.49232 1.96815 1.67132 1.13943 1.12760 1.27805 1.23131 0.91564 0.88921 0.99098 1.18429 0.97083 0.87870 0.93903 1.91571 1.71620 1.49621 1.96888 0.92885 0.95178 0.90472 0.92265 0.88446 0.88465 0.81455 0.76256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.90 71.98 0.64 -4.82 16 2 C 0.05 2.49 2.74 -12.28 -0.03 2.45 16 3 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 4 C -0.54 -29.60 8.37 25.60 0.21 -29.39 16 5 H 0.06 3.30 6.76 -2.91 -0.02 3.28 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -49.05 11.32 21.45 0.24 -48.80 16 8 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C 0.48 20.90 7.25 71.24 0.52 21.42 16 13 O -0.54 -25.87 15.21 21.97 0.33 -25.54 16 14 O -0.35 -12.29 8.70 -51.42 -0.45 -12.74 16 15 C 0.10 2.72 5.53 71.24 0.39 3.12 16 16 C -0.05 -1.16 5.92 -19.64 -0.12 -1.28 16 17 C -0.15 -3.37 9.42 22.40 0.21 -3.16 16 18 C 0.29 6.78 8.41 84.73 0.71 7.49 16 19 F -0.11 -2.65 17.29 44.97 0.78 -1.87 16 20 N -0.50 -10.61 10.37 -196.76 -2.04 -12.65 16 21 C 0.13 2.07 11.17 84.71 0.95 3.01 16 22 C 0.05 0.92 7.29 22.46 0.16 1.08 16 23 F -0.12 -2.24 16.89 44.97 0.76 -1.48 16 24 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 3.78 6.07 -2.39 -0.01 3.76 16 27 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.10 2.63 8.13 -2.39 -0.02 2.61 16 29 H 0.10 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.17 3.99 7.10 -2.91 -0.02 3.97 16 31 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -60.53 287.89 6.92 -53.61 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.17 Total: 2.95 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.10 Total: 1.68 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.80 Total: -61.45 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.11 Total: -38.27 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 1.54 Total: -3.35 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -60.53 6.92 -53.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851021157.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.693 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds