Wall clock time and date at job start Mon Mar 30 2020 05:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.08995 * 109.47102 * 2 1
4 4 C 1.50704 * 109.46588 * 240.00196 * 2 1 3
5 5 H 1.07996 * 120.00462 * 245.64018 * 4 2 1
6 6 C 1.37880 * 119.99746 * 65.64565 * 4 2 1
7 7 N 1.31521 * 119.99875 * 197.11887 * 6 4 2
8 8 Si 1.86799 * 120.00363 * 17.40092 * 6 4 2
9 9 H 1.48499 * 109.47419 * 179.72169 * 8 6 4
10 10 H 1.48504 * 109.46837 * 299.72667 * 8 6 4
11 11 H 1.48505 * 109.47142 * 59.71922 * 8 6 4
12 12 C 1.50693 * 109.47367 * 120.00682 * 2 1 3
13 13 O 1.21279 * 120.00303 * 119.99866 * 12 2 1
14 14 N 1.34780 * 119.99868 * 299.99746 * 12 2 1
15 15 N 1.40101 * 120.00101 * 180.02562 * 14 12 2
16 16 C 1.39290 * 119.99730 * 180.02562 * 15 14 12
17 17 N 1.32317 * 119.69298 * 359.71951 * 16 15 14
18 18 C 1.32002 * 121.67286 * 179.75793 * 17 16 15
19 19 C 1.38231 * 120.86156 * 0.52251 * 18 17 16
20 20 F 1.35094 * 120.35455 * 179.76602 * 19 18 17
21 21 C 1.39026 * 119.29433 * 359.74963 * 19 18 17
22 22 C 1.38491 * 118.46546 * 359.97438 * 21 19 18
23 23 F 1.35096 * 120.45890 * 179.97438 * 22 21 19
24 24 H 1.09002 * 109.47104 * 186.34398 * 1 2 3
25 25 H 1.09005 * 109.46364 * 306.34065 * 1 2 3
26 26 H 1.08998 * 109.47454 * 66.34018 * 1 2 3
27 27 H 0.97001 * 119.99482 * 355.25203 * 7 6 4
28 28 H 0.97002 * 120.00199 * 0.02562 * 14 12 2
29 29 H 0.96993 * 120.00101 * 359.97438 * 15 14 12
30 30 H 1.08004 * 119.57399 * 180.27076 * 18 17 16
31 31 H 1.08002 * 120.76504 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2306
5 1 2.5760 -1.6386 -1.1342
6 6 1.7977 -0.1753 -2.4794
7 7 1.9237 -0.9271 -3.5512
8 14 1.3088 1.6195 -2.6498
9 1 1.1224 1.9476 -4.0861
10 1 0.0385 1.8580 -1.9185
11 1 2.3769 2.4798 -2.0801
12 6 2.0325 -0.7105 1.2303
13 8 2.7297 -1.6966 1.1189
14 7 1.7069 -0.2501 2.4545
15 7 2.1744 -0.9103 3.5983
16 6 1.8375 -0.4348 4.8635
17 7 1.0802 0.6442 4.9779
18 6 0.7334 1.1258 6.1570
19 6 1.1617 0.5208 7.3238
20 9 0.8045 1.0252 8.5251
21 6 1.9636 -0.6123 7.2479
22 6 2.3054 -1.0964 5.9962
23 9 3.0831 -2.1945 5.8756
24 1 -0.3633 -1.0214 0.1136
25 1 -0.3632 0.6090 0.8279
26 1 -0.3634 0.4124 -0.9412
27 1 2.2478 -1.8377 -3.4695
28 1 1.1489 0.5383 2.5436
29 1 2.7320 -1.6990 3.5093
30 1 0.1103 2.0063 6.2108
31 1 2.3113 -1.1041 8.1444
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000854899527.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:55
Heat of formation + Delta-G solvation = -52.010561 kcal
Electronic energy + Delta-G solvation = -19966.372847 eV
Core-core repulsion = 16306.496815 eV
Total energy + Delta-G solvation = -3659.876032 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 271.087 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-49.23338 -49.14081 -40.44913 -39.13017 -35.90117 -33.95721 -32.53180 -32.15966
-30.93471 -28.37420 -24.94375 -24.49255 -23.41819 -22.45721 -20.22473 -18.63744
-18.38720 -18.11699 -17.43003 -16.57886 -16.50637 -16.13646 -15.75979 -15.57448
-14.96579 -14.72824 -14.32207 -14.08971 -13.73387 -13.52567 -13.36335 -12.87798
-12.63240 -12.04314 -11.71390 -11.69291 -11.14037 -10.60132 -10.28601 -10.23501
-10.15847 -9.86684 -9.35230 -9.12700 -8.96105 -8.27892 -7.46700 -6.54021
-4.13084 0.52184 0.68690 1.94341 3.10617 3.29229 3.35425 3.37550
3.46452 3.54187 3.69860 3.76562 4.24832 4.41904 4.43783 4.84089
5.11983 5.19382 5.33468 5.40600 5.58757 6.08592 6.14956 6.28062
6.37138 6.59569 6.80827 7.11488 7.12548 7.50229 7.76021 8.00996
8.39480 8.84829 8.94366 9.56435 10.88488
Molecular weight = 271.09amu
Principal moments of inertia in cm(-1)
A = 0.034088 B = 0.004101 C = 0.003738
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 821.210940 B = 6825.414666 C = 7489.280003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.018 3.982
3 H 0.051 0.949
4 C -0.594 4.594
5 H 0.076 0.924
6 C 0.032 3.968
7 N -0.900 5.900
8 Si 1.042 2.958
9 H -0.283 1.283
10 H -0.272 1.272
11 H -0.282 1.282
12 C 0.527 3.473
13 O -0.533 6.533
14 N -0.533 5.533
15 N -0.505 5.505
16 C 0.383 3.617
17 N -0.502 5.502
18 C 0.133 3.867
19 C -0.001 4.001
20 F -0.130 7.130
21 C -0.091 4.091
22 C 0.008 3.992
23 F -0.125 7.125
24 H 0.050 0.950
25 H 0.030 0.970
26 H 0.069 0.931
27 H 0.270 0.730
28 H 0.428 0.572
29 H 0.444 0.556
30 H 0.177 0.823
31 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.194 5.120 21.566 22.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.005 4.005
3 H 0.069 0.931
4 C -0.632 4.632
5 H 0.094 0.906
6 C -0.174 4.174
7 N -0.534 5.534
8 Si 0.870 3.130
9 H -0.208 1.208
10 H -0.199 1.199
11 H -0.208 1.208
12 C 0.316 3.684
13 O -0.406 6.406
14 N -0.283 5.283
15 N -0.229 5.229
16 C 0.143 3.857
17 N -0.220 5.220
18 C -0.027 4.027
19 C -0.026 4.026
20 F -0.109 7.109
21 C -0.118 4.118
22 C -0.021 4.021
23 F -0.104 7.104
24 H 0.069 0.931
25 H 0.049 0.951
26 H 0.088 0.912
27 H 0.081 0.919
28 H 0.270 0.730
29 H 0.290 0.710
30 H 0.194 0.806
31 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -3.422 5.959 19.364 20.547
hybrid contribution 0.856 -1.708 2.227 2.934
sum -2.566 4.251 21.591 22.155
Atomic orbital electron populations
1.22256 0.96487 1.00895 1.01038 1.19206 0.93999 0.97037 0.90280
0.93116 1.21917 1.40959 1.10929 0.89362 0.90600 1.25777 0.94707
1.05028 0.91848 1.70840 1.41175 1.10147 1.31199 0.84087 0.77057
0.75270 0.76555 1.20845 1.19853 1.20809 1.22129 0.79223 0.85025
0.81990 1.90595 1.37684 1.26559 1.85733 1.45775 1.54967 1.31166
0.96430 1.43334 1.54031 1.30507 0.95049 1.18350 0.92524 0.90786
0.84076 1.67260 1.16072 1.11671 1.26985 1.22620 0.96373 0.98760
0.84968 1.18060 1.04818 0.97563 0.82193 1.91512 1.90550 1.86489
1.42389 1.21340 0.97265 0.95688 0.97475 1.17419 1.02225 0.90146
0.92304 1.91531 1.72269 1.50155 1.96446 0.93113 0.95105 0.91220
0.91938 0.72970 0.71032 0.80606 0.82262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.95 8.72 37.16 0.32 -2.63 16
2 C 0.02 0.41 2.22 -92.92 -0.21 0.21 16
3 H 0.05 1.08 6.80 -51.93 -0.35 0.73 16
4 C -0.59 -16.61 8.63 -34.44 -0.30 -16.90 16
5 H 0.08 2.41 7.02 -52.49 -0.37 2.04 16
6 C 0.03 0.90 5.30 -17.82 -0.09 0.80 16
7 N -0.90 -27.27 13.70 55.43 0.76 -26.51 16
8 Si 1.04 23.59 26.29 -169.99 -4.47 19.12 16
9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
10 H -0.27 -5.47 5.76 56.52 0.33 -5.14 16
11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
12 C 0.53 11.34 7.26 -10.99 -0.08 11.26 16
13 O -0.53 -13.38 15.31 5.56 0.09 -13.30 16
14 N -0.53 -9.03 6.19 31.22 0.19 -8.84 16
15 N -0.50 -7.72 6.43 31.20 0.20 -7.52 16
16 C 0.38 4.97 7.60 -154.76 -1.18 3.79 16
17 N -0.50 -6.01 9.37 -12.29 -0.12 -6.12 16
18 C 0.13 1.22 11.16 -17.48 -0.20 1.03 16
19 C 0.00 -0.01 7.34 -39.29 -0.29 -0.30 16
20 F -0.13 -1.19 17.28 2.25 0.04 -1.15 16
21 C -0.09 -0.82 10.14 -39.20 -0.40 -1.22 16
22 C 0.01 0.09 7.35 -39.10 -0.29 -0.20 16
23 F -0.13 -1.49 16.65 2.25 0.04 -1.45 16
24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
25 H 0.03 0.48 7.75 -51.93 -0.40 0.08 16
26 H 0.07 1.44 4.87 -51.93 -0.25 1.18 16
27 H 0.27 8.28 8.73 -40.82 -0.36 7.92 16
28 H 0.43 6.38 7.50 -182.59 -1.37 5.01 16
29 H 0.44 6.93 7.47 -182.60 -1.36 5.57 16
30 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16
31 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16
LS Contribution 281.28 15.07 4.24 4.24
Total: -1.00 -31.83 281.28 -6.33 -38.16
By element:
Atomic # 1 Polarization: 12.12 SS G_CDS: -4.61 Total: 7.52 kcal
Atomic # 6 Polarization: -1.46 SS G_CDS: -2.70 Total: -4.16 kcal
Atomic # 7 Polarization: -50.03 SS G_CDS: 1.04 Total: -48.99 kcal
Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.30 kcal
Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.60 kcal
Atomic # 14 Polarization: 23.59 SS G_CDS: -4.47 Total: 19.12 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -31.83 -6.33 -38.16 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000854899527.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.847 kcal
(2) G-P(sol) polarization free energy of solvation -31.829 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.676 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.011 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds