Wall clock time and date at job start Mon Mar 30 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47102 * 2 1 4 4 C 1.50704 * 109.46588 * 240.00196 * 2 1 3 5 5 H 1.07996 * 120.00462 * 245.64018 * 4 2 1 6 6 C 1.37880 * 119.99746 * 65.64565 * 4 2 1 7 7 N 1.31521 * 119.99875 * 197.11887 * 6 4 2 8 8 Si 1.86799 * 120.00363 * 17.40092 * 6 4 2 9 9 H 1.48499 * 109.47419 * 179.72169 * 8 6 4 10 10 H 1.48504 * 109.46837 * 299.72667 * 8 6 4 11 11 H 1.48505 * 109.47142 * 59.71922 * 8 6 4 12 12 C 1.50693 * 109.47367 * 120.00682 * 2 1 3 13 13 O 1.21279 * 120.00303 * 119.99866 * 12 2 1 14 14 N 1.34780 * 119.99868 * 299.99746 * 12 2 1 15 15 N 1.40101 * 120.00101 * 180.02562 * 14 12 2 16 16 C 1.39290 * 119.99730 * 180.02562 * 15 14 12 17 17 N 1.32317 * 119.69298 * 359.71951 * 16 15 14 18 18 C 1.32002 * 121.67286 * 179.75793 * 17 16 15 19 19 C 1.38231 * 120.86156 * 0.52251 * 18 17 16 20 20 F 1.35094 * 120.35455 * 179.76602 * 19 18 17 21 21 C 1.39026 * 119.29433 * 359.74963 * 19 18 17 22 22 C 1.38491 * 118.46546 * 359.97438 * 21 19 18 23 23 F 1.35096 * 120.45890 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.47104 * 186.34398 * 1 2 3 25 25 H 1.09005 * 109.46364 * 306.34065 * 1 2 3 26 26 H 1.08998 * 109.47454 * 66.34018 * 1 2 3 27 27 H 0.97001 * 119.99482 * 355.25203 * 7 6 4 28 28 H 0.97002 * 120.00199 * 0.02562 * 14 12 2 29 29 H 0.96993 * 120.00101 * 359.97438 * 15 14 12 30 30 H 1.08004 * 119.57399 * 180.27076 * 18 17 16 31 31 H 1.08002 * 120.76504 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5760 -1.6386 -1.1342 6 6 1.7977 -0.1753 -2.4794 7 7 1.9237 -0.9271 -3.5512 8 14 1.3088 1.6195 -2.6498 9 1 1.1224 1.9476 -4.0861 10 1 0.0385 1.8580 -1.9185 11 1 2.3769 2.4798 -2.0801 12 6 2.0325 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7069 -0.2501 2.4545 15 7 2.1744 -0.9103 3.5983 16 6 1.8375 -0.4348 4.8635 17 7 1.0802 0.6442 4.9779 18 6 0.7334 1.1258 6.1570 19 6 1.1617 0.5208 7.3238 20 9 0.8045 1.0252 8.5251 21 6 1.9636 -0.6123 7.2479 22 6 2.3054 -1.0964 5.9962 23 9 3.0831 -2.1945 5.8756 24 1 -0.3633 -1.0214 0.1136 25 1 -0.3632 0.6090 0.8279 26 1 -0.3634 0.4124 -0.9412 27 1 2.2478 -1.8377 -3.4695 28 1 1.1489 0.5383 2.5436 29 1 2.7320 -1.6990 3.5093 30 1 0.1103 2.0063 6.2108 31 1 2.3113 -1.1041 8.1444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854899527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:55 Heat of formation + Delta-G solvation = -52.010561 kcal Electronic energy + Delta-G solvation = -19966.372847 eV Core-core repulsion = 16306.496815 eV Total energy + Delta-G solvation = -3659.876032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.23338 -49.14081 -40.44913 -39.13017 -35.90117 -33.95721 -32.53180 -32.15966 -30.93471 -28.37420 -24.94375 -24.49255 -23.41819 -22.45721 -20.22473 -18.63744 -18.38720 -18.11699 -17.43003 -16.57886 -16.50637 -16.13646 -15.75979 -15.57448 -14.96579 -14.72824 -14.32207 -14.08971 -13.73387 -13.52567 -13.36335 -12.87798 -12.63240 -12.04314 -11.71390 -11.69291 -11.14037 -10.60132 -10.28601 -10.23501 -10.15847 -9.86684 -9.35230 -9.12700 -8.96105 -8.27892 -7.46700 -6.54021 -4.13084 0.52184 0.68690 1.94341 3.10617 3.29229 3.35425 3.37550 3.46452 3.54187 3.69860 3.76562 4.24832 4.41904 4.43783 4.84089 5.11983 5.19382 5.33468 5.40600 5.58757 6.08592 6.14956 6.28062 6.37138 6.59569 6.80827 7.11488 7.12548 7.50229 7.76021 8.00996 8.39480 8.84829 8.94366 9.56435 10.88488 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.004101 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.210940 B = 6825.414666 C = 7489.280003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.018 3.982 3 H 0.051 0.949 4 C -0.594 4.594 5 H 0.076 0.924 6 C 0.032 3.968 7 N -0.900 5.900 8 Si 1.042 2.958 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.527 3.473 13 O -0.533 6.533 14 N -0.533 5.533 15 N -0.505 5.505 16 C 0.383 3.617 17 N -0.502 5.502 18 C 0.133 3.867 19 C -0.001 4.001 20 F -0.130 7.130 21 C -0.091 4.091 22 C 0.008 3.992 23 F -0.125 7.125 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.270 0.730 28 H 0.428 0.572 29 H 0.444 0.556 30 H 0.177 0.823 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.194 5.120 21.566 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 H 0.069 0.931 4 C -0.632 4.632 5 H 0.094 0.906 6 C -0.174 4.174 7 N -0.534 5.534 8 Si 0.870 3.130 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.208 1.208 12 C 0.316 3.684 13 O -0.406 6.406 14 N -0.283 5.283 15 N -0.229 5.229 16 C 0.143 3.857 17 N -0.220 5.220 18 C -0.027 4.027 19 C -0.026 4.026 20 F -0.109 7.109 21 C -0.118 4.118 22 C -0.021 4.021 23 F -0.104 7.104 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.270 0.730 29 H 0.290 0.710 30 H 0.194 0.806 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.422 5.959 19.364 20.547 hybrid contribution 0.856 -1.708 2.227 2.934 sum -2.566 4.251 21.591 22.155 Atomic orbital electron populations 1.22256 0.96487 1.00895 1.01038 1.19206 0.93999 0.97037 0.90280 0.93116 1.21917 1.40959 1.10929 0.89362 0.90600 1.25777 0.94707 1.05028 0.91848 1.70840 1.41175 1.10147 1.31199 0.84087 0.77057 0.75270 0.76555 1.20845 1.19853 1.20809 1.22129 0.79223 0.85025 0.81990 1.90595 1.37684 1.26559 1.85733 1.45775 1.54967 1.31166 0.96430 1.43334 1.54031 1.30507 0.95049 1.18350 0.92524 0.90786 0.84076 1.67260 1.16072 1.11671 1.26985 1.22620 0.96373 0.98760 0.84968 1.18060 1.04818 0.97563 0.82193 1.91512 1.90550 1.86489 1.42389 1.21340 0.97265 0.95688 0.97475 1.17419 1.02225 0.90146 0.92304 1.91531 1.72269 1.50155 1.96446 0.93113 0.95105 0.91220 0.91938 0.72970 0.71032 0.80606 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.72 37.16 0.32 -2.63 16 2 C 0.02 0.41 2.22 -92.92 -0.21 0.21 16 3 H 0.05 1.08 6.80 -51.93 -0.35 0.73 16 4 C -0.59 -16.61 8.63 -34.44 -0.30 -16.90 16 5 H 0.08 2.41 7.02 -52.49 -0.37 2.04 16 6 C 0.03 0.90 5.30 -17.82 -0.09 0.80 16 7 N -0.90 -27.27 13.70 55.43 0.76 -26.51 16 8 Si 1.04 23.59 26.29 -169.99 -4.47 19.12 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.27 -5.47 5.76 56.52 0.33 -5.14 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.53 11.34 7.26 -10.99 -0.08 11.26 16 13 O -0.53 -13.38 15.31 5.56 0.09 -13.30 16 14 N -0.53 -9.03 6.19 31.22 0.19 -8.84 16 15 N -0.50 -7.72 6.43 31.20 0.20 -7.52 16 16 C 0.38 4.97 7.60 -154.76 -1.18 3.79 16 17 N -0.50 -6.01 9.37 -12.29 -0.12 -6.12 16 18 C 0.13 1.22 11.16 -17.48 -0.20 1.03 16 19 C 0.00 -0.01 7.34 -39.29 -0.29 -0.30 16 20 F -0.13 -1.19 17.28 2.25 0.04 -1.15 16 21 C -0.09 -0.82 10.14 -39.20 -0.40 -1.22 16 22 C 0.01 0.09 7.35 -39.10 -0.29 -0.20 16 23 F -0.13 -1.49 16.65 2.25 0.04 -1.45 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.48 7.75 -51.93 -0.40 0.08 16 26 H 0.07 1.44 4.87 -51.93 -0.25 1.18 16 27 H 0.27 8.28 8.73 -40.82 -0.36 7.92 16 28 H 0.43 6.38 7.50 -182.59 -1.37 5.01 16 29 H 0.44 6.93 7.47 -182.60 -1.36 5.57 16 30 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 31 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -31.83 281.28 -6.33 -38.16 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.61 Total: 7.52 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.70 Total: -4.16 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 1.04 Total: -48.99 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.47 Total: 19.12 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.83 -6.33 -38.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854899527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.847 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds