Wall clock time and date at job start Mon Mar 30 2020 05:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.08995 * 109.47102 * 2 1
4 4 C 1.50704 * 109.46588 * 240.00196 * 2 1 3
5 5 H 1.07996 * 120.00462 * 245.64018 * 4 2 1
6 6 C 1.37880 * 119.99746 * 65.64565 * 4 2 1
7 7 N 1.31521 * 119.99875 * 197.11887 * 6 4 2
8 8 Si 1.86799 * 120.00363 * 17.40092 * 6 4 2
9 9 H 1.48499 * 109.47419 * 179.72169 * 8 6 4
10 10 H 1.48504 * 109.46837 * 299.72667 * 8 6 4
11 11 H 1.48505 * 109.47142 * 59.71922 * 8 6 4
12 12 C 1.50693 * 109.47367 * 120.00682 * 2 1 3
13 13 O 1.21279 * 120.00303 * 119.99866 * 12 2 1
14 14 N 1.34780 * 119.99868 * 299.99746 * 12 2 1
15 15 N 1.40101 * 120.00101 * 180.02562 * 14 12 2
16 16 C 1.39290 * 119.99730 * 180.02562 * 15 14 12
17 17 N 1.32317 * 119.69298 * 359.71951 * 16 15 14
18 18 C 1.32002 * 121.67286 * 179.75793 * 17 16 15
19 19 C 1.38231 * 120.86156 * 0.52251 * 18 17 16
20 20 F 1.35094 * 120.35455 * 179.76602 * 19 18 17
21 21 C 1.39026 * 119.29433 * 359.74963 * 19 18 17
22 22 C 1.38491 * 118.46546 * 359.97438 * 21 19 18
23 23 F 1.35096 * 120.45890 * 179.97438 * 22 21 19
24 24 H 1.09002 * 109.47104 * 186.34398 * 1 2 3
25 25 H 1.09005 * 109.46364 * 306.34065 * 1 2 3
26 26 H 1.08998 * 109.47454 * 66.34018 * 1 2 3
27 27 H 0.97001 * 119.99482 * 355.25203 * 7 6 4
28 28 H 0.97002 * 120.00199 * 0.02562 * 14 12 2
29 29 H 0.96993 * 120.00101 * 359.97438 * 15 14 12
30 30 H 1.08004 * 119.57399 * 180.27076 * 18 17 16
31 31 H 1.08002 * 120.76504 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2306
5 1 2.5760 -1.6386 -1.1342
6 6 1.7977 -0.1753 -2.4794
7 7 1.9237 -0.9271 -3.5512
8 14 1.3088 1.6195 -2.6498
9 1 1.1224 1.9476 -4.0861
10 1 0.0385 1.8580 -1.9185
11 1 2.3769 2.4798 -2.0801
12 6 2.0325 -0.7105 1.2303
13 8 2.7297 -1.6966 1.1189
14 7 1.7069 -0.2501 2.4545
15 7 2.1744 -0.9103 3.5983
16 6 1.8375 -0.4348 4.8635
17 7 1.0802 0.6442 4.9779
18 6 0.7334 1.1258 6.1570
19 6 1.1617 0.5208 7.3238
20 9 0.8045 1.0252 8.5251
21 6 1.9636 -0.6123 7.2479
22 6 2.3054 -1.0964 5.9962
23 9 3.0831 -2.1945 5.8756
24 1 -0.3633 -1.0214 0.1136
25 1 -0.3632 0.6090 0.8279
26 1 -0.3634 0.4124 -0.9412
27 1 2.2478 -1.8377 -3.4695
28 1 1.1489 0.5383 2.5436
29 1 2.7320 -1.6990 3.5093
30 1 0.1103 2.0063 6.2108
31 1 2.3113 -1.1041 8.1444
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000854899527.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:55
Heat of formation + Delta-G solvation = -75.127764 kcal
Electronic energy + Delta-G solvation = -19967.375284 eV
Core-core repulsion = 16306.496815 eV
Total energy + Delta-G solvation = -3660.878469 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 271.087 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-50.12081 -49.89772 -41.46420 -40.61138 -37.19970 -35.88241 -33.79637 -33.34343
-32.49650 -29.43628 -26.82454 -25.51476 -24.50328 -23.86785 -21.73041 -19.89602
-19.39819 -19.30855 -19.09290 -17.89941 -17.37934 -17.27654 -16.85861 -16.38980
-16.25885 -15.83147 -15.76638 -15.20415 -15.04278 -14.89446 -14.56247 -14.29168
-13.92643 -13.50864 -13.42122 -13.14356 -12.75113 -12.35748 -11.97731 -11.57785
-11.13550 -11.00692 -10.96825 -10.84610 -10.49172 -10.36723 -8.79230 -8.59599
-6.38774 -0.27674 -0.15139 0.72759 1.51607 1.60085 1.64211 1.79525
2.34857 2.51278 2.55388 2.77952 2.94180 3.08657 3.45431 3.58853
3.85028 4.10889 4.33378 4.41552 4.51021 4.64052 4.70770 4.79405
5.09598 5.24954 5.48661 5.55033 5.78209 5.96687 6.05674 6.45753
6.59086 6.68520 7.30013 7.43569 8.62397
Molecular weight = 271.09amu
Principal moments of inertia in cm(-1)
A = 0.034088 B = 0.004101 C = 0.003738
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 821.210940 B = 6825.414666 C = 7489.280003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.012 3.988
3 H 0.078 0.922
4 C -0.603 4.603
5 H 0.016 0.984
6 C -0.021 4.021
7 N -0.936 5.936
8 Si 1.085 2.915
9 H -0.293 1.293
10 H -0.221 1.221
11 H -0.259 1.259
12 C 0.526 3.474
13 O -0.584 6.584
14 N -0.510 5.510
15 N -0.521 5.521
16 C 0.365 3.635
17 N -0.512 5.512
18 C 0.136 3.864
19 C 0.014 3.986
20 F -0.125 7.125
21 C -0.080 4.080
22 C 0.001 3.999
23 F -0.133 7.133
24 H 0.035 0.965
25 H 0.081 0.919
26 H 0.066 0.934
27 H 0.248 0.752
28 H 0.441 0.559
29 H 0.439 0.561
30 H 0.211 0.789
31 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.965 8.224 24.686 26.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.011 4.011
3 H 0.095 0.905
4 C -0.641 4.641
5 H 0.035 0.965
6 C -0.218 4.218
7 N -0.571 5.571
8 Si 0.904 3.096
9 H -0.219 1.219
10 H -0.144 1.144
11 H -0.184 1.184
12 C 0.315 3.685
13 O -0.461 6.461
14 N -0.259 5.259
15 N -0.248 5.248
16 C 0.128 3.872
17 N -0.229 5.229
18 C -0.023 4.023
19 C -0.011 4.011
20 F -0.104 7.104
21 C -0.107 4.107
22 C -0.027 4.027
23 F -0.111 7.111
24 H 0.054 0.946
25 H 0.100 0.900
26 H 0.084 0.916
27 H 0.057 0.943
28 H 0.285 0.715
29 H 0.283 0.717
30 H 0.227 0.773
31 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges -5.236 9.098 22.600 24.919
hybrid contribution 1.417 -2.694 1.532 3.408
sum -3.818 6.404 24.132 25.258
Atomic orbital electron populations
1.22135 0.93743 1.01163 1.02933 1.19153 0.95980 0.97403 0.88597
0.90486 1.22014 1.40268 1.09255 0.92553 0.96516 1.27529 0.93926
1.09201 0.91159 1.71001 1.44033 1.09450 1.32629 0.83649 0.79796
0.69316 0.76889 1.21908 1.14441 1.18403 1.21780 0.78999 0.84447
0.83317 1.90578 1.40155 1.28772 1.86614 1.45115 1.53692 1.30772
0.96315 1.43329 1.55516 1.31032 0.94946 1.18490 0.93639 0.91752
0.83334 1.67273 1.15928 1.11315 1.28418 1.23164 0.95856 0.99251
0.84058 1.18106 1.03690 0.96969 0.82343 1.91543 1.90369 1.86342
1.42140 1.21609 0.96261 0.95383 0.97460 1.17524 1.02497 0.90134
0.92579 1.91518 1.72548 1.50565 1.96514 0.94587 0.90005 0.91558
0.94336 0.71467 0.71679 0.77274 0.79614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.25 8.72 71.99 0.63 -4.62 16
2 C 0.01 0.53 2.22 -12.28 -0.03 0.50 16
3 H 0.08 3.04 6.80 -2.39 -0.02 3.02 16
4 C -0.60 -34.98 8.63 25.60 0.22 -34.76 16
5 H 0.02 1.13 7.02 -2.91 -0.02 1.11 16
6 C -0.02 -1.21 5.30 84.65 0.45 -0.76 16
7 N -0.94 -59.31 13.70 21.45 0.29 -59.01 16
8 Si 1.09 45.86 26.29 68.60 1.80 47.66 16
9 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
10 H -0.22 -7.56 5.76 99.48 0.57 -6.99 16
11 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16
12 C 0.53 22.75 7.26 87.65 0.64 23.39 16
13 O -0.58 -30.79 15.31 -3.03 -0.05 -30.84 16
14 N -0.51 -16.66 6.19 -173.54 -1.07 -17.73 16
15 N -0.52 -15.67 6.43 -55.20 -0.35 -16.03 16
16 C 0.37 8.83 7.60 133.02 1.01 9.84 16
17 N -0.51 -10.67 9.37 -192.79 -1.81 -12.47 16
18 C 0.14 1.95 11.16 84.67 0.94 2.90 16
19 C 0.01 0.19 7.34 22.46 0.16 0.36 16
20 F -0.13 -1.74 17.28 44.97 0.78 -0.97 16
21 C -0.08 -1.19 10.14 22.52 0.23 -0.96 16
22 C 0.00 0.02 7.35 22.58 0.17 0.18 16
23 F -0.13 -3.04 16.65 44.97 0.75 -2.30 16
24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16
25 H 0.08 2.19 7.75 -2.38 -0.02 2.17 16
26 H 0.07 2.49 4.87 -2.39 -0.01 2.48 16
27 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16
28 H 0.44 11.86 7.50 -213.32 -1.60 10.26 16
29 H 0.44 14.08 7.47 -213.33 -1.59 12.49 16
30 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16
31 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16
Total: -1.00 -75.01 281.28 2.61 -72.39
By element:
Atomic # 1 Polarization: 25.37 SS G_CDS: -2.15 Total: 23.22 kcal
Atomic # 6 Polarization: -8.35 SS G_CDS: 4.42 Total: -3.93 kcal
Atomic # 7 Polarization: -102.30 SS G_CDS: -2.94 Total: -105.24 kcal
Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal
Atomic # 9 Polarization: -4.79 SS G_CDS: 1.53 Total: -3.26 kcal
Atomic # 14 Polarization: 45.86 SS G_CDS: 1.80 Total: 47.66 kcal
Total: -75.01 2.61 -72.39 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000854899527.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.735 kcal
(2) G-P(sol) polarization free energy of solvation -75.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds