Wall clock time and date at job start Mon Mar 30 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.47102 * 2 1 4 4 C 1.50704 * 109.46588 * 240.00196 * 2 1 3 5 5 H 1.07996 * 120.00462 * 245.64018 * 4 2 1 6 6 C 1.37880 * 119.99746 * 65.64565 * 4 2 1 7 7 N 1.31521 * 119.99875 * 197.11887 * 6 4 2 8 8 Si 1.86799 * 120.00363 * 17.40092 * 6 4 2 9 9 H 1.48499 * 109.47419 * 179.72169 * 8 6 4 10 10 H 1.48504 * 109.46837 * 299.72667 * 8 6 4 11 11 H 1.48505 * 109.47142 * 59.71922 * 8 6 4 12 12 C 1.50693 * 109.47367 * 120.00682 * 2 1 3 13 13 O 1.21279 * 120.00303 * 119.99866 * 12 2 1 14 14 N 1.34780 * 119.99868 * 299.99746 * 12 2 1 15 15 N 1.40101 * 120.00101 * 180.02562 * 14 12 2 16 16 C 1.39290 * 119.99730 * 180.02562 * 15 14 12 17 17 N 1.32317 * 119.69298 * 359.71951 * 16 15 14 18 18 C 1.32002 * 121.67286 * 179.75793 * 17 16 15 19 19 C 1.38231 * 120.86156 * 0.52251 * 18 17 16 20 20 F 1.35094 * 120.35455 * 179.76602 * 19 18 17 21 21 C 1.39026 * 119.29433 * 359.74963 * 19 18 17 22 22 C 1.38491 * 118.46546 * 359.97438 * 21 19 18 23 23 F 1.35096 * 120.45890 * 179.97438 * 22 21 19 24 24 H 1.09002 * 109.47104 * 186.34398 * 1 2 3 25 25 H 1.09005 * 109.46364 * 306.34065 * 1 2 3 26 26 H 1.08998 * 109.47454 * 66.34018 * 1 2 3 27 27 H 0.97001 * 119.99482 * 355.25203 * 7 6 4 28 28 H 0.97002 * 120.00199 * 0.02562 * 14 12 2 29 29 H 0.96993 * 120.00101 * 359.97438 * 15 14 12 30 30 H 1.08004 * 119.57399 * 180.27076 * 18 17 16 31 31 H 1.08002 * 120.76504 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5760 -1.6386 -1.1342 6 6 1.7977 -0.1753 -2.4794 7 7 1.9237 -0.9271 -3.5512 8 14 1.3088 1.6195 -2.6498 9 1 1.1224 1.9476 -4.0861 10 1 0.0385 1.8580 -1.9185 11 1 2.3769 2.4798 -2.0801 12 6 2.0325 -0.7105 1.2303 13 8 2.7297 -1.6966 1.1189 14 7 1.7069 -0.2501 2.4545 15 7 2.1744 -0.9103 3.5983 16 6 1.8375 -0.4348 4.8635 17 7 1.0802 0.6442 4.9779 18 6 0.7334 1.1258 6.1570 19 6 1.1617 0.5208 7.3238 20 9 0.8045 1.0252 8.5251 21 6 1.9636 -0.6123 7.2479 22 6 2.3054 -1.0964 5.9962 23 9 3.0831 -2.1945 5.8756 24 1 -0.3633 -1.0214 0.1136 25 1 -0.3632 0.6090 0.8279 26 1 -0.3634 0.4124 -0.9412 27 1 2.2478 -1.8377 -3.4695 28 1 1.1489 0.5383 2.5436 29 1 2.7320 -1.6990 3.5093 30 1 0.1103 2.0063 6.2108 31 1 2.3113 -1.1041 8.1444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854899527.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:55 Heat of formation + Delta-G solvation = -75.127764 kcal Electronic energy + Delta-G solvation = -19967.375284 eV Core-core repulsion = 16306.496815 eV Total energy + Delta-G solvation = -3660.878469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.12081 -49.89772 -41.46420 -40.61138 -37.19970 -35.88241 -33.79637 -33.34343 -32.49650 -29.43628 -26.82454 -25.51476 -24.50328 -23.86785 -21.73041 -19.89602 -19.39819 -19.30855 -19.09290 -17.89941 -17.37934 -17.27654 -16.85861 -16.38980 -16.25885 -15.83147 -15.76638 -15.20415 -15.04278 -14.89446 -14.56247 -14.29168 -13.92643 -13.50864 -13.42122 -13.14356 -12.75113 -12.35748 -11.97731 -11.57785 -11.13550 -11.00692 -10.96825 -10.84610 -10.49172 -10.36723 -8.79230 -8.59599 -6.38774 -0.27674 -0.15139 0.72759 1.51607 1.60085 1.64211 1.79525 2.34857 2.51278 2.55388 2.77952 2.94180 3.08657 3.45431 3.58853 3.85028 4.10889 4.33378 4.41552 4.51021 4.64052 4.70770 4.79405 5.09598 5.24954 5.48661 5.55033 5.78209 5.96687 6.05674 6.45753 6.59086 6.68520 7.30013 7.43569 8.62397 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.004101 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.210940 B = 6825.414666 C = 7489.280003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.012 3.988 3 H 0.078 0.922 4 C -0.603 4.603 5 H 0.016 0.984 6 C -0.021 4.021 7 N -0.936 5.936 8 Si 1.085 2.915 9 H -0.293 1.293 10 H -0.221 1.221 11 H -0.259 1.259 12 C 0.526 3.474 13 O -0.584 6.584 14 N -0.510 5.510 15 N -0.521 5.521 16 C 0.365 3.635 17 N -0.512 5.512 18 C 0.136 3.864 19 C 0.014 3.986 20 F -0.125 7.125 21 C -0.080 4.080 22 C 0.001 3.999 23 F -0.133 7.133 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.248 0.752 28 H 0.441 0.559 29 H 0.439 0.561 30 H 0.211 0.789 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 8.224 24.686 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.011 4.011 3 H 0.095 0.905 4 C -0.641 4.641 5 H 0.035 0.965 6 C -0.218 4.218 7 N -0.571 5.571 8 Si 0.904 3.096 9 H -0.219 1.219 10 H -0.144 1.144 11 H -0.184 1.184 12 C 0.315 3.685 13 O -0.461 6.461 14 N -0.259 5.259 15 N -0.248 5.248 16 C 0.128 3.872 17 N -0.229 5.229 18 C -0.023 4.023 19 C -0.011 4.011 20 F -0.104 7.104 21 C -0.107 4.107 22 C -0.027 4.027 23 F -0.111 7.111 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.285 0.715 29 H 0.283 0.717 30 H 0.227 0.773 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.236 9.098 22.600 24.919 hybrid contribution 1.417 -2.694 1.532 3.408 sum -3.818 6.404 24.132 25.258 Atomic orbital electron populations 1.22135 0.93743 1.01163 1.02933 1.19153 0.95980 0.97403 0.88597 0.90486 1.22014 1.40268 1.09255 0.92553 0.96516 1.27529 0.93926 1.09201 0.91159 1.71001 1.44033 1.09450 1.32629 0.83649 0.79796 0.69316 0.76889 1.21908 1.14441 1.18403 1.21780 0.78999 0.84447 0.83317 1.90578 1.40155 1.28772 1.86614 1.45115 1.53692 1.30772 0.96315 1.43329 1.55516 1.31032 0.94946 1.18490 0.93639 0.91752 0.83334 1.67273 1.15928 1.11315 1.28418 1.23164 0.95856 0.99251 0.84058 1.18106 1.03690 0.96969 0.82343 1.91543 1.90369 1.86342 1.42140 1.21609 0.96261 0.95383 0.97460 1.17524 1.02497 0.90134 0.92579 1.91518 1.72548 1.50565 1.96514 0.94587 0.90005 0.91558 0.94336 0.71467 0.71679 0.77274 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 8.72 71.99 0.63 -4.62 16 2 C 0.01 0.53 2.22 -12.28 -0.03 0.50 16 3 H 0.08 3.04 6.80 -2.39 -0.02 3.02 16 4 C -0.60 -34.98 8.63 25.60 0.22 -34.76 16 5 H 0.02 1.13 7.02 -2.91 -0.02 1.11 16 6 C -0.02 -1.21 5.30 84.65 0.45 -0.76 16 7 N -0.94 -59.31 13.70 21.45 0.29 -59.01 16 8 Si 1.09 45.86 26.29 68.60 1.80 47.66 16 9 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.22 -7.56 5.76 99.48 0.57 -6.99 16 11 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 12 C 0.53 22.75 7.26 87.65 0.64 23.39 16 13 O -0.58 -30.79 15.31 -3.03 -0.05 -30.84 16 14 N -0.51 -16.66 6.19 -173.54 -1.07 -17.73 16 15 N -0.52 -15.67 6.43 -55.20 -0.35 -16.03 16 16 C 0.37 8.83 7.60 133.02 1.01 9.84 16 17 N -0.51 -10.67 9.37 -192.79 -1.81 -12.47 16 18 C 0.14 1.95 11.16 84.67 0.94 2.90 16 19 C 0.01 0.19 7.34 22.46 0.16 0.36 16 20 F -0.13 -1.74 17.28 44.97 0.78 -0.97 16 21 C -0.08 -1.19 10.14 22.52 0.23 -0.96 16 22 C 0.00 0.02 7.35 22.58 0.17 0.18 16 23 F -0.13 -3.04 16.65 44.97 0.75 -2.30 16 24 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 2.19 7.75 -2.38 -0.02 2.17 16 26 H 0.07 2.49 4.87 -2.39 -0.01 2.48 16 27 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 28 H 0.44 11.86 7.50 -213.32 -1.60 10.26 16 29 H 0.44 14.08 7.47 -213.33 -1.59 12.49 16 30 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -75.01 281.28 2.61 -72.39 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -2.15 Total: 23.22 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 4.42 Total: -3.93 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -2.94 Total: -105.24 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.05 Total: -30.84 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 1.53 Total: -3.26 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.80 Total: 47.66 kcal Total: -75.01 2.61 -72.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854899527.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.735 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds