Wall clock time and date at job start Mon Mar 30 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47142 * 2 1 4 4 N 1.34229 * 126.28071 * 265.02721 * 3 2 1 5 5 H 0.96996 * 125.73706 * 0.23867 * 4 3 2 6 6 N 1.39935 * 108.52176 * 179.97438 * 4 3 2 7 7 C 1.30526 * 108.89441 * 0.02562 * 6 4 3 8 8 Cl 1.73597 * 126.00455 * 179.97438 * 7 6 4 9 9 C 1.38073 * 126.27883 * 85.00350 * 3 2 1 10 10 C 1.47379 * 126.42427 * 0.03961 * 9 3 2 11 11 O 1.21609 * 120.00194 * 269.95433 * 10 9 3 12 12 N 1.34778 * 120.00241 * 89.94892 * 10 9 3 13 13 C 1.46498 * 120.00315 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47233 * 325.00844 * 13 12 10 15 15 C 1.53001 * 109.47006 * 85.00249 * 13 12 10 16 16 C 1.50696 * 109.47192 * 205.00291 * 13 12 10 17 17 H 1.08004 * 120.00076 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99861 * 180.02562 * 16 13 12 19 19 N 1.31519 * 120.00129 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99868 * 180.02562 * 18 16 13 21 21 H 1.48492 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46969 * 120.00212 * 20 18 16 23 23 H 1.48502 * 109.46712 * 240.00060 * 20 18 16 24 24 H 1.08999 * 109.46550 * 299.99478 * 1 2 3 25 25 H 1.08990 * 109.47091 * 59.99598 * 1 2 3 26 26 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46997 * 240.00339 * 2 1 3 28 28 H 1.09004 * 109.47267 * 120.00397 * 2 1 3 29 29 H 0.97002 * 119.99821 * 0.02562 * 12 10 9 30 30 H 1.09003 * 109.47145 * 300.00538 * 15 13 12 31 31 H 1.09010 * 109.47064 * 60.00096 * 15 13 12 32 32 H 1.08996 * 109.47372 * 179.97438 * 15 13 12 33 33 H 0.96999 * 119.99820 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3856 2.1384 -1.0780 5 1 2.3581 1.8305 -1.9974 6 7 2.7944 3.4074 -0.6528 7 6 2.6965 3.4694 0.6473 8 17 3.0903 4.8409 1.6360 9 6 2.2133 2.2234 1.1088 10 6 1.9525 1.8508 2.5107 11 8 0.8557 2.0471 2.9981 12 7 2.9294 1.2926 3.2526 13 6 2.6703 0.9227 4.6463 14 1 1.9890 1.6465 5.0936 15 6 2.0388 -0.4700 4.6954 16 6 3.9676 0.9134 5.4130 17 1 4.8927 1.1580 4.9122 18 6 3.9737 0.5915 6.7537 19 7 2.8474 0.2921 7.3632 20 14 5.5817 0.5806 7.7043 21 1 6.6965 0.9498 6.7955 22 1 5.5050 1.5600 8.8179 23 1 5.8218 -0.7775 8.2552 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8043 1.1363 2.8640 30 1 1.1005 -0.4632 4.1407 31 1 2.7201 -1.1939 4.2480 32 1 1.8464 -0.7454 5.7323 33 1 2.8516 0.0660 8.3065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858919212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:46 Heat of formation + Delta-G solvation = -7.025787 kcal Electronic energy + Delta-G solvation = -18719.440942 eV Core-core repulsion = 15613.312276 eV Total energy + Delta-G solvation = -3106.128666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.65425 -40.12350 -37.95513 -36.64207 -35.14518 -34.27883 -32.62428 -31.17003 -29.95697 -27.29608 -25.32902 -24.02306 -22.97747 -22.07776 -20.79023 -19.24318 -18.29998 -17.29157 -17.16307 -16.45480 -16.30684 -16.08510 -15.61150 -15.11455 -14.75790 -14.48980 -14.32726 -13.75027 -13.61765 -13.14043 -12.99497 -12.90697 -12.82800 -12.71117 -12.36315 -12.23115 -12.19926 -12.11245 -11.77821 -11.06018 -10.89354 -10.57103 -10.56253 -9.88869 -9.73487 -8.14542 -6.31060 0.36127 0.42745 1.00858 1.45599 1.47327 1.58818 1.68014 1.86653 2.39738 2.72093 3.16048 3.45331 3.70997 3.95280 4.13579 4.26741 4.43092 4.57532 4.76600 4.84809 4.97068 4.98778 5.07441 5.14872 5.33823 5.48730 5.63899 5.73349 5.94772 5.96299 6.14562 6.24766 6.75999 6.96563 7.34662 7.53902 8.91902 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.005853 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.411378 B = 4782.725794 C = 5600.853517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C 0.166 3.834 4 N -0.422 5.422 5 H 0.467 0.533 6 N -0.287 5.287 7 C 0.146 3.854 8 Cl 0.012 6.988 9 C -0.292 4.292 10 C 0.590 3.410 11 O -0.588 6.588 12 N -0.691 5.691 13 C 0.271 3.729 14 H -0.001 1.001 15 C -0.132 4.132 16 C -0.544 4.544 17 H 0.070 0.930 18 C 0.017 3.983 19 N -0.916 5.916 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.277 1.277 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.402 0.598 30 H 0.017 0.983 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.798 -1.295 -18.398 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C 0.032 3.968 4 N -0.133 5.133 5 H 0.318 0.682 6 N -0.114 5.114 7 C -0.046 4.046 8 Cl 0.040 6.960 9 C -0.308 4.308 10 C 0.374 3.626 11 O -0.469 6.469 12 N -0.338 5.338 13 C 0.168 3.832 14 H 0.017 0.983 15 C -0.190 4.190 16 C -0.582 4.582 17 H 0.088 0.912 18 C -0.183 4.183 19 N -0.554 5.554 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.149 0.851 28 H 0.105 0.895 29 H 0.236 0.764 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.341 -0.433 -18.811 18.820 hybrid contribution 0.686 -0.094 1.228 1.410 sum 1.027 -0.528 -17.584 17.622 Atomic orbital electron populations 1.21748 0.93049 1.03742 1.02001 1.20574 0.97230 0.86191 1.06522 1.21710 0.94063 0.95866 0.85139 1.45764 1.50033 1.07917 1.09631 0.68187 1.77045 1.24026 1.00446 1.09837 1.22610 1.00826 0.90173 0.91015 1.98414 1.92207 1.39904 1.65465 1.19876 1.20694 0.95592 0.94594 1.17478 0.83885 0.76608 0.84598 1.90719 1.25638 1.56650 1.73851 1.46281 1.14030 1.60056 1.13454 1.18404 0.95506 0.92381 0.76920 0.98282 1.21874 0.97114 0.98159 1.01897 1.21553 0.93475 1.47971 0.95235 0.91159 1.25735 0.99917 0.94273 0.98383 1.70053 1.27633 1.46536 1.11222 0.85348 0.79334 0.77692 0.78279 1.18613 1.21087 1.20219 0.95006 0.90968 0.89300 0.85053 0.89450 0.76375 0.96435 0.93756 0.91509 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.90 71.98 0.71 -2.01 16 2 C -0.07 -1.14 6.27 29.85 0.19 -0.96 16 3 C 0.17 3.90 6.55 42.15 0.28 4.17 16 4 N -0.42 -8.05 7.28 -46.79 -0.34 -8.39 16 5 H 0.47 4.35 8.96 -213.43 -1.91 2.43 16 6 N -0.29 -7.83 12.64 -48.96 -0.62 -8.45 16 7 C 0.15 4.70 7.89 85.66 0.68 5.38 16 8 Cl 0.01 0.40 29.19 -2.72 -0.08 0.32 16 9 C -0.29 -9.71 5.88 -20.13 -0.12 -9.83 16 10 C 0.59 24.84 7.22 86.65 0.63 25.47 16 11 O -0.59 -29.96 16.77 -4.06 -0.07 -30.03 16 12 N -0.69 -29.56 5.07 -449.42 -2.28 -31.83 16 13 C 0.27 14.06 2.56 44.24 0.11 14.17 16 14 H 0.00 -0.05 7.58 -2.38 -0.02 -0.06 16 15 C -0.13 -6.49 9.26 71.98 0.67 -5.83 16 16 C -0.54 -28.90 8.73 25.60 0.22 -28.68 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 18 C 0.02 0.91 5.30 84.65 0.45 1.36 16 19 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 20 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 24 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.83 8.08 -2.38 -0.02 1.81 16 29 H 0.40 15.07 8.52 -92.71 -0.79 14.28 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -71.02 306.79 1.15 -69.87 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -1.54 Total: 13.15 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 3.81 Total: 3.25 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.99 Total: -100.73 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.07 Total: -30.03 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -71.02 1.15 -69.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.842 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds