Wall clock time and date at job start Mon Mar 30 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.47142 * 2 1 4 4 N 1.34229 * 126.28071 * 265.02721 * 3 2 1 5 5 H 0.96996 * 125.73706 * 0.23867 * 4 3 2 6 6 N 1.39935 * 108.52176 * 179.97438 * 4 3 2 7 7 C 1.30526 * 108.89441 * 0.02562 * 6 4 3 8 8 Cl 1.73597 * 126.00445 * 179.97438 * 7 6 4 9 9 C 1.38073 * 126.27883 * 85.00350 * 3 2 1 10 10 C 1.47380 * 126.42063 * 359.97438 * 9 3 2 11 11 O 1.21609 * 120.00016 * 270.01399 * 10 9 3 12 12 N 1.34781 * 119.99924 * 90.02510 * 10 9 3 13 13 C 1.46500 * 119.99970 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47355 * 34.99634 * 13 12 10 15 15 C 1.53003 * 109.46817 * 274.99452 * 13 12 10 16 16 C 1.50699 * 109.47012 * 154.99714 * 13 12 10 17 17 H 1.07996 * 119.99991 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99823 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00151 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99749 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47054 * 90.00137 * 20 18 16 22 22 H 1.48506 * 109.47126 * 209.99804 * 20 18 16 23 23 H 1.48498 * 109.47576 * 330.00005 * 20 18 16 24 24 H 1.08990 * 109.47091 * 59.99598 * 1 2 3 25 25 H 1.09001 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46550 * 299.99478 * 1 2 3 27 27 H 1.09003 * 109.46997 * 240.00339 * 2 1 3 28 28 H 1.09004 * 109.47267 * 120.00397 * 2 1 3 29 29 H 0.96994 * 119.99937 * 359.97438 * 12 10 9 30 30 H 1.08998 * 109.47387 * 60.00487 * 15 13 12 31 31 H 1.09007 * 109.46806 * 180.02562 * 15 13 12 32 32 H 1.08996 * 109.47306 * 300.00212 * 15 13 12 33 33 H 0.97000 * 119.99859 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3856 2.1384 -1.0780 5 1 2.3581 1.8305 -1.9974 6 7 2.7944 3.4074 -0.6528 7 6 2.6965 3.4694 0.6473 8 17 3.0903 4.8409 1.6360 9 6 2.2133 2.2234 1.1088 10 6 1.9512 1.8512 2.5106 11 8 0.8540 2.0475 2.9968 12 7 2.9276 1.2935 3.2536 13 6 2.6672 0.9240 4.6471 14 1 1.6388 0.5764 4.7448 15 6 2.8811 2.1433 5.5464 16 6 3.6107 -0.1762 5.0598 17 1 4.3324 -0.5614 4.3547 18 6 3.5533 -0.6903 6.3379 19 7 2.6754 -0.2202 7.1969 20 14 4.7223 -2.0546 6.8492 21 1 5.9615 -1.4599 7.4111 22 1 4.0709 -2.9051 7.8777 23 1 5.0638 -2.8835 5.6653 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8027 1.1368 2.8657 30 1 2.1987 2.9391 5.2480 31 1 2.6878 1.8683 6.5834 32 1 3.9095 2.4909 5.4488 33 1 2.6348 -0.5822 8.0960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858919213.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:49 Heat of formation + Delta-G solvation = -6.945651 kcal Electronic energy + Delta-G solvation = -18712.488537 eV Core-core repulsion = 15606.363346 eV Total energy + Delta-G solvation = -3106.125191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.65487 -40.12531 -37.95829 -36.64474 -35.14800 -34.27663 -32.62598 -31.16719 -29.96815 -27.30059 -25.34632 -24.00000 -22.99527 -22.08072 -20.79752 -19.25900 -18.25370 -17.35230 -17.12329 -16.45704 -16.30360 -15.96531 -15.79135 -14.99099 -14.87366 -14.47845 -14.26491 -13.77887 -13.63250 -13.13787 -13.00068 -12.91699 -12.80909 -12.70336 -12.36303 -12.25525 -12.20773 -12.12101 -11.77881 -11.06869 -10.89337 -10.56789 -10.55754 -9.88836 -9.74234 -8.13437 -6.30573 0.35491 0.42541 1.00935 1.48348 1.48541 1.59131 1.67861 1.85817 2.40392 2.72251 3.17180 3.45130 3.70872 3.95352 4.12758 4.26245 4.42945 4.57449 4.75558 4.83189 4.96713 4.97656 5.07411 5.14221 5.32865 5.47114 5.63913 5.72355 5.92858 5.96010 6.13065 6.24552 6.76210 6.96514 7.35047 7.53915 8.92982 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.005760 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.948228 B = 4859.578953 C = 5552.859550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C 0.166 3.834 4 N -0.422 5.422 5 H 0.467 0.533 6 N -0.287 5.287 7 C 0.147 3.853 8 Cl 0.014 6.986 9 C -0.292 4.292 10 C 0.590 3.410 11 O -0.588 6.588 12 N -0.691 5.691 13 C 0.273 3.727 14 H 0.005 0.995 15 C -0.135 4.135 16 C -0.544 4.544 17 H 0.074 0.926 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.402 0.598 30 H 0.011 0.989 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 0.581 -17.799 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C 0.032 3.968 4 N -0.133 5.133 5 H 0.318 0.682 6 N -0.113 5.113 7 C -0.045 4.045 8 Cl 0.042 6.958 9 C -0.307 4.307 10 C 0.374 3.626 11 O -0.469 6.469 12 N -0.338 5.338 13 C 0.170 3.830 14 H 0.023 0.977 15 C -0.194 4.194 16 C -0.582 4.582 17 H 0.092 0.908 18 C -0.184 4.184 19 N -0.555 5.555 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.186 1.186 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.050 0.950 27 H 0.149 0.851 28 H 0.104 0.896 29 H 0.236 0.764 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.010 1.471 -18.203 18.290 hybrid contribution 0.506 -0.656 1.056 1.342 sum 1.516 0.814 -17.147 17.233 Atomic orbital electron populations 1.21745 0.93052 1.03709 1.02005 1.20565 0.97248 0.86329 1.06448 1.21694 0.94087 0.95810 0.85244 1.45762 1.50051 1.07931 1.09604 0.68198 1.77042 1.23996 1.00387 1.09865 1.22591 1.00814 0.90108 0.90994 1.98409 1.92199 1.39776 1.65439 1.19870 1.20698 0.95619 0.94556 1.17483 0.83825 0.76731 0.84533 1.90719 1.25650 1.56340 1.74142 1.46281 1.14159 1.59847 1.13553 1.18384 0.95672 0.92538 0.76408 0.97712 1.21914 0.98105 0.96704 1.02647 1.21517 1.19174 1.19281 0.98260 0.90790 1.25766 0.97123 0.99246 0.96253 1.70054 1.36238 1.43218 1.06036 0.85366 0.78405 0.78546 0.78142 1.19966 1.21248 1.18588 0.90844 0.89409 0.95040 0.85072 0.89640 0.76360 0.97012 0.91319 0.94322 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.90 71.98 0.71 -2.16 16 2 C -0.07 -1.23 6.27 29.85 0.19 -1.05 16 3 C 0.17 3.96 6.55 42.15 0.28 4.24 16 4 N -0.42 -8.13 7.28 -46.79 -0.34 -8.47 16 5 H 0.47 4.46 8.96 -213.43 -1.91 2.55 16 6 N -0.29 -7.74 12.64 -48.96 -0.62 -8.36 16 7 C 0.15 4.67 7.89 85.66 0.68 5.34 16 8 Cl 0.01 0.44 29.19 -2.72 -0.08 0.36 16 9 C -0.29 -9.71 5.88 -20.13 -0.12 -9.83 16 10 C 0.59 24.86 7.23 86.65 0.63 25.49 16 11 O -0.59 -29.98 16.77 -4.06 -0.07 -30.05 16 12 N -0.69 -29.58 5.07 -449.41 -2.28 -31.86 16 13 C 0.27 14.18 2.56 44.25 0.11 14.29 16 14 H 0.00 0.30 7.58 -2.39 -0.02 0.28 16 15 C -0.13 -6.97 9.26 71.98 0.67 -6.31 16 16 C -0.54 -28.44 8.73 25.60 0.22 -28.21 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 18 C 0.02 0.86 5.30 84.66 0.45 1.31 16 19 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 20 Si 0.97 41.37 29.54 68.60 2.03 43.39 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.95 8.08 -2.38 -0.02 1.93 16 29 H 0.40 15.06 8.52 -92.71 -0.79 14.27 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -70.20 306.79 1.15 -69.04 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -1.54 Total: 14.77 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 3.81 Total: 3.12 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -2.99 Total: -100.65 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.07 Total: -30.05 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -0.08 Total: 0.36 kcal Total: -70.20 1.15 -69.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919213.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.099 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds