Wall clock time and date at job start Mon Mar 30 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.47190 * 2 1 4 4 C 1.34643 * 117.00209 * 179.97438 * 3 2 1 5 5 O 1.21413 * 119.99923 * 0.02562 * 4 3 2 6 6 C 1.48246 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.42300 * 126.94232 * 179.71038 * 6 4 3 8 8 C 1.35311 * 103.92256 * 179.91315 * 7 6 4 9 9 C 1.50695 * 126.66478 * 180.09158 * 8 7 6 10 10 S 1.81402 * 109.47143 * 90.28605 * 9 8 7 11 11 C 1.81397 * 102.99963 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47044 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00367 * 359.97438 * 12 11 10 14 14 C 1.37887 * 120.00285 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99500 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00196 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46949 * 120.00042 * 16 14 12 19 19 H 1.48496 * 109.47033 * 240.00002 * 16 14 12 20 20 O 1.34018 * 106.67262 * 0.35170 * 8 7 6 21 21 N 1.20906 * 111.85787 * 359.75722 * 20 8 7 22 22 H 1.08994 * 109.46985 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46935 * 300.00219 * 1 2 3 24 24 H 1.08994 * 109.47020 * 59.99656 * 1 2 3 25 25 H 1.08999 * 109.47200 * 240.00228 * 2 1 3 26 26 H 1.08999 * 109.47126 * 119.99615 * 2 1 3 27 27 H 1.07999 * 128.03889 * 0.02562 * 7 6 4 28 28 H 1.08998 * 109.47229 * 210.28347 * 9 8 7 29 29 H 1.08994 * 109.46953 * 330.28400 * 9 8 7 30 30 H 1.09006 * 109.47071 * 299.99340 * 11 10 9 31 31 H 1.08991 * 109.47769 * 59.99407 * 11 10 9 32 32 H 0.96997 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0885 0.5826 0.0005 6 6 3.9155 2.9153 0.0000 7 6 5.2933 3.2709 0.0062 8 6 5.2804 4.6240 0.0007 9 6 6.4805 5.5353 0.0018 10 16 6.9636 5.9010 -1.7081 11 6 8.3993 6.9904 -1.5023 12 6 8.9252 7.3895 -2.8569 13 1 8.4442 7.0240 -3.7521 14 6 10.0206 8.2214 -2.9536 15 7 10.6067 8.6661 -1.8635 16 14 10.6729 8.7155 -4.6328 17 1 9.8434 8.0855 -5.6910 18 1 10.6134 10.1928 -4.7718 19 1 12.0801 8.2616 -4.7703 20 8 3.9929 4.9962 0.0000 21 7 3.2488 4.0432 -0.0004 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 6.1502 2.6136 0.0119 28 1 6.2311 6.4639 0.5153 29 1 7.3076 5.0463 0.5164 30 1 8.1023 7.8827 -0.9510 31 1 9.1783 6.4648 -0.9502 32 1 11.3771 9.2516 -1.9314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917847481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:31 Heat of formation + Delta-G solvation = -33.343206 kcal Electronic energy + Delta-G solvation = -17219.473858 eV Core-core repulsion = 14081.954939 eV Total energy + Delta-G solvation = -3137.518919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.22222 -40.59794 -36.99255 -34.34738 -33.49098 -33.22501 -31.97467 -28.70956 -27.89227 -25.94346 -23.30975 -23.22929 -22.72831 -20.78670 -18.02376 -17.81683 -17.67422 -16.80867 -16.49478 -16.49084 -15.40390 -14.60650 -14.44275 -14.33584 -14.15032 -13.76606 -13.20977 -13.09569 -12.74696 -12.40934 -12.37115 -12.17792 -11.99992 -11.60708 -11.12874 -10.94319 -10.90963 -10.85085 -10.70714 -10.41488 -9.71158 -9.34714 -9.00543 -8.68855 -6.89757 -6.26977 -4.31599 0.74795 1.26895 2.05876 2.49847 2.69133 2.86454 3.21709 3.29395 3.35155 3.63625 3.73438 4.30071 4.32030 4.55451 4.58305 4.77985 4.86725 4.91237 5.04905 5.10843 5.32253 5.39848 5.43416 5.59114 5.60314 5.77622 5.98028 6.97258 6.98753 7.28492 7.67824 7.86611 7.90896 8.70448 9.32276 10.84179 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.047997 B = 0.002914 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.233350 B = 9607.380392 C = 9752.130098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.343 6.343 4 C 0.557 3.443 5 O -0.487 6.487 6 C -0.019 4.019 7 C -0.169 4.169 8 C 0.012 3.988 9 C -0.026 4.026 10 S -0.278 6.278 11 C 0.089 3.911 12 C -0.514 4.514 13 H 0.069 0.931 14 C 0.066 3.934 15 N -0.891 5.891 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.281 1.281 20 O 0.139 5.861 21 N -0.308 5.308 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.187 0.813 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 -12.956 6.569 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.259 6.259 4 C 0.399 3.601 5 O -0.372 6.372 6 C -0.175 4.175 7 C -0.194 4.194 8 C -0.052 4.052 9 C -0.174 4.174 10 S -0.051 6.051 11 C -0.057 4.057 12 C -0.553 4.553 13 H 0.087 0.913 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.207 1.207 20 O 0.058 5.942 21 N -0.006 5.006 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.204 0.796 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.260 -13.328 5.712 21.787 hybrid contribution 1.760 0.216 0.294 1.797 sum -14.501 -13.112 6.005 20.451 Atomic orbital electron populations 1.21816 0.92190 1.03122 1.03859 1.23163 0.95699 0.79324 1.03013 1.86611 1.22717 1.32949 1.83609 1.19448 0.80979 0.86774 0.72913 1.90871 1.60614 1.40656 1.45094 1.22180 0.92251 0.91780 1.11274 1.22328 0.96124 0.94232 1.06743 1.23766 0.85847 0.94124 1.01456 1.21740 0.92838 1.00531 1.02241 1.87108 1.45132 1.67553 1.05291 1.21168 0.88998 0.93943 1.01624 1.20670 1.13585 1.30109 0.90984 0.91329 1.24957 0.95933 0.95332 0.97556 1.69952 1.21785 1.33479 1.27724 0.86273 0.78757 0.78363 0.83156 1.19390 1.20670 1.20680 1.84845 1.14393 1.29843 1.65100 1.74325 1.17503 0.94817 1.13972 0.89927 0.91312 0.91238 0.90741 0.90810 0.79578 0.87670 0.86852 0.94116 0.94151 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.34 -4.27 10.23 -40.34 -0.41 -4.68 16 4 C 0.56 7.81 7.99 34.84 0.28 8.09 16 5 O -0.49 -7.39 16.74 -19.20 -0.32 -7.71 16 6 C -0.02 -0.27 7.24 -82.54 -0.60 -0.87 16 7 C -0.17 -2.31 10.92 -39.07 -0.43 -2.74 16 8 C 0.01 0.16 6.73 -35.35 -0.24 -0.08 16 9 C -0.03 -0.37 6.50 36.00 0.23 -0.14 16 10 S -0.28 -5.58 21.64 -107.50 -2.33 -7.90 16 11 C 0.09 2.16 5.70 36.00 0.21 2.36 16 12 C -0.51 -13.88 9.13 -34.44 -0.31 -14.20 16 13 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 16 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 O 0.14 2.06 11.18 17.24 0.19 2.25 16 21 N -0.31 -4.67 12.12 33.29 0.40 -4.27 16 22 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.11 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -29.81 309.54 -6.19 -36.01 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -3.77 Total: -4.25 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.34 Total: -5.66 kcal Atomic # 7 Polarization: -29.63 SS G_CDS: 1.14 Total: -28.49 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.54 Total: -10.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.33 Total: -7.90 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.81 -6.19 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.663 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds