Wall clock time and date at job start Mon Mar 30 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.47190 * 2 1 4 4 C 1.34643 * 117.00209 * 179.97438 * 3 2 1 5 5 O 1.21413 * 119.99923 * 0.02562 * 4 3 2 6 6 C 1.48246 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.42300 * 126.94232 * 179.71038 * 6 4 3 8 8 C 1.35311 * 103.92256 * 179.91315 * 7 6 4 9 9 C 1.50695 * 126.66478 * 180.09158 * 8 7 6 10 10 S 1.81402 * 109.47143 * 90.28605 * 9 8 7 11 11 C 1.81397 * 102.99963 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47044 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00367 * 359.97438 * 12 11 10 14 14 C 1.37887 * 120.00285 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99500 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00196 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47173 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46949 * 120.00042 * 16 14 12 19 19 H 1.48496 * 109.47033 * 240.00002 * 16 14 12 20 20 O 1.34018 * 106.67262 * 0.35170 * 8 7 6 21 21 N 1.20906 * 111.85787 * 359.75722 * 20 8 7 22 22 H 1.08994 * 109.46985 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46935 * 300.00219 * 1 2 3 24 24 H 1.08994 * 109.47020 * 59.99656 * 1 2 3 25 25 H 1.08999 * 109.47200 * 240.00228 * 2 1 3 26 26 H 1.08999 * 109.47126 * 119.99615 * 2 1 3 27 27 H 1.07999 * 128.03889 * 0.02562 * 7 6 4 28 28 H 1.08998 * 109.47229 * 210.28347 * 9 8 7 29 29 H 1.08994 * 109.46953 * 330.28400 * 9 8 7 30 30 H 1.09006 * 109.47071 * 299.99340 * 11 10 9 31 31 H 1.08991 * 109.47769 * 59.99407 * 11 10 9 32 32 H 0.96997 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3489 1.5454 0.0005 5 8 4.0885 0.5826 0.0005 6 6 3.9155 2.9153 0.0000 7 6 5.2933 3.2709 0.0062 8 6 5.2804 4.6240 0.0007 9 6 6.4805 5.5353 0.0018 10 16 6.9636 5.9010 -1.7081 11 6 8.3993 6.9904 -1.5023 12 6 8.9252 7.3895 -2.8569 13 1 8.4442 7.0240 -3.7521 14 6 10.0206 8.2214 -2.9536 15 7 10.6067 8.6661 -1.8635 16 14 10.6729 8.7155 -4.6328 17 1 9.8434 8.0855 -5.6910 18 1 10.6134 10.1928 -4.7718 19 1 12.0801 8.2616 -4.7703 20 8 3.9929 4.9962 0.0000 21 7 3.2488 4.0432 -0.0004 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 6.1502 2.6136 0.0119 28 1 6.2311 6.4639 0.5153 29 1 7.3076 5.0463 0.5164 30 1 8.1023 7.8827 -0.9510 31 1 9.1783 6.4648 -0.9502 32 1 11.3771 9.2516 -1.9314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917847481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:30 Heat of formation + Delta-G solvation = -49.665389 kcal Electronic energy + Delta-G solvation = -17220.181641 eV Core-core repulsion = 14081.954939 eV Total energy + Delta-G solvation = -3138.226702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.37267 -41.61461 -37.98672 -35.48160 -35.26462 -34.63657 -32.63850 -30.66881 -29.13558 -26.96507 -25.18504 -24.22299 -23.70352 -21.83169 -19.22283 -19.06540 -18.71755 -18.40252 -17.72780 -17.54039 -17.07544 -16.34374 -15.41418 -15.38908 -15.25778 -14.71921 -14.65525 -14.50721 -14.22212 -13.74596 -13.70224 -13.12225 -12.83243 -12.70601 -12.62929 -12.60613 -12.24240 -12.19301 -11.85573 -11.65529 -11.60374 -10.89811 -10.72470 -10.45782 -8.52188 -8.31612 -6.43302 -0.39802 0.06852 1.10220 1.18714 1.41812 1.43628 1.56152 1.58211 1.71208 1.95748 2.38877 2.66196 3.04080 3.24752 3.65549 3.85892 3.93328 3.94057 3.97035 4.26528 4.31781 4.49514 4.68627 4.71841 4.86226 4.96572 5.00115 5.01130 5.24924 5.59887 5.91401 6.25811 6.63843 6.73533 7.24619 8.80053 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.047997 B = 0.002914 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.233350 B = 9607.380392 C = 9752.130098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.559 3.441 5 O -0.503 6.503 6 C -0.028 4.028 7 C -0.158 4.158 8 C 0.007 3.993 9 C -0.008 4.008 10 S -0.298 6.298 11 C 0.093 3.907 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.018 3.982 15 N -0.922 5.922 16 Si 0.971 3.029 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.274 1.274 20 O 0.137 5.863 21 N -0.318 5.318 22 H 0.109 0.891 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.205 0.795 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.025 0.975 31 H 0.027 0.973 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.415 -13.815 6.555 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.402 3.598 5 O -0.389 6.389 6 C -0.184 4.184 7 C -0.183 4.183 8 C -0.057 4.057 9 C -0.156 4.156 10 S -0.070 6.070 11 C -0.054 4.054 12 C -0.575 4.575 13 H 0.078 0.922 14 C -0.183 4.183 15 N -0.560 5.560 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.199 1.199 20 O 0.056 5.944 21 N -0.016 5.016 22 H 0.127 0.873 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.222 0.778 28 H 0.140 0.860 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.913 -14.190 5.695 22.800 hybrid contribution 1.821 0.380 0.377 1.898 sum -15.092 -13.810 6.072 21.339 Atomic orbital electron populations 1.21857 0.90120 1.04785 1.03677 1.23547 0.97309 0.77696 1.03593 1.86614 1.21721 1.35254 1.83056 1.19399 0.81485 0.86354 0.72603 1.90857 1.61071 1.40970 1.46044 1.22417 0.92726 0.92025 1.11198 1.22606 0.96374 0.94212 1.05143 1.23640 0.85515 0.94157 1.02372 1.21750 0.93743 1.01898 0.98223 1.86962 1.43080 1.66386 1.10585 1.20829 0.90482 0.94123 1.00000 1.20990 1.14073 1.30463 0.91928 0.92219 1.25807 0.96143 0.95217 1.01160 1.70035 1.22294 1.34051 1.29662 0.85295 0.78223 0.78186 0.78758 1.19212 1.19928 1.19894 1.84835 1.14640 1.29863 1.65106 1.74322 1.17826 0.95117 1.14291 0.87299 0.91326 0.91552 0.90383 0.90064 0.77813 0.85981 0.84431 0.95633 0.95450 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 71.98 0.74 -0.80 16 2 C 0.05 0.82 6.19 71.98 0.45 1.27 16 3 O -0.35 -8.37 10.23 -55.52 -0.57 -8.93 16 4 C 0.56 15.09 7.99 70.48 0.56 15.65 16 5 O -0.50 -14.68 16.74 20.12 0.34 -14.34 16 6 C -0.03 -0.78 7.24 42.94 0.31 -0.47 16 7 C -0.16 -4.03 10.92 22.60 0.25 -3.78 16 8 C 0.01 0.18 6.73 25.01 0.17 0.34 16 9 C -0.01 -0.23 6.50 71.23 0.46 0.24 16 10 S -0.30 -11.78 21.64 -56.49 -1.22 -13.00 16 11 C 0.09 4.54 5.70 71.23 0.41 4.94 16 12 C -0.54 -29.23 9.13 25.60 0.23 -29.00 16 13 H 0.06 3.29 7.71 -2.91 -0.02 3.27 16 14 C 0.02 0.97 5.46 84.66 0.46 1.43 16 15 N -0.92 -51.91 13.29 21.45 0.28 -51.63 16 16 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 O 0.14 3.87 11.18 71.86 0.80 4.67 16 21 N -0.32 -9.27 12.12 -49.52 -0.60 -9.87 16 22 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.03 1.37 8.14 -2.40 -0.02 1.35 16 32 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -63.43 309.54 6.23 -57.20 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 1.13 Total: 1.53 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.04 Total: -10.17 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.32 Total: -61.50 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.57 Total: -18.60 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -11.78 SS G_CDS: -1.22 Total: -13.00 kcal Total: -63.43 6.23 -57.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.533 kcal (2) G-P(sol) polarization free energy of solvation -63.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds