Wall clock time and date at job start Mon Mar 30 2020 04:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34394 * 126.60552 * 2 1 4 4 C 1.50699 * 126.60449 * 359.97438 * 3 2 1 5 5 C 1.47944 * 106.78557 * 180.02562 * 3 2 1 6 6 O 1.21400 * 125.79238 * 179.97438 * 5 3 2 7 7 N 1.34516 * 108.41311 * 359.97438 * 5 3 2 8 8 C 1.39511 * 125.19793 * 180.02562 * 7 5 3 9 9 C 1.39431 * 119.82672 * 180.02562 * 8 7 5 10 10 C 1.36389 * 120.17319 * 180.29798 * 9 8 7 11 11 C 1.40861 * 119.82240 * 359.45887 * 10 9 8 12 12 C 1.41164 * 120.17189 * 180.27018 * 11 10 9 13 13 H 1.08004 * 120.00384 * 205.18721 * 12 11 10 14 14 C 1.39907 * 119.99902 * 25.18875 * 12 11 10 15 15 N 1.30869 * 119.99821 * 17.97123 * 14 12 11 16 16 Si 1.86800 * 119.99745 * 197.97005 * 14 12 11 17 17 H 1.48498 * 109.46996 * 94.51677 * 16 14 12 18 18 H 1.48505 * 109.46784 * 214.50928 * 16 14 12 19 19 H 1.48499 * 109.47449 * 334.51013 * 16 14 12 20 20 C 1.40860 * 119.66146 * 0.54105 * 11 10 9 21 21 C 1.36393 * 119.82573 * 359.73142 * 20 11 10 22 22 C 1.34512 * 109.59921 * 0.27167 * 7 5 3 23 23 O 1.21403 * 125.78985 * 179.73588 * 22 7 5 24 24 H 1.09005 * 109.47076 * 90.00101 * 1 2 3 25 25 H 1.08999 * 109.46953 * 209.99961 * 1 2 3 26 26 H 1.08992 * 109.47265 * 330.00565 * 1 2 3 27 27 H 1.09004 * 109.46795 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47598 * 300.02788 * 4 3 2 29 29 H 1.09005 * 109.47292 * 60.03313 * 4 3 2 30 30 H 1.08003 * 119.91758 * 0.02768 * 9 8 7 31 31 H 1.08001 * 120.09014 * 179.72714 * 10 9 8 32 32 H 0.96996 * 119.99983 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.08701 * 179.70837 * 20 11 10 34 34 H 1.07997 * 119.91852 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3084 1.0789 0.0000 4 6 1.8731 2.5216 -0.0005 5 6 3.7002 0.5772 -0.0006 6 8 4.7021 1.2629 -0.0013 7 7 3.6672 -0.7675 -0.0004 8 6 4.7871 -1.5994 -0.0003 9 6 4.6226 -2.9840 -0.0006 10 6 5.7125 -3.8039 0.0055 11 6 7.0070 -3.2484 0.0007 12 6 8.1402 -4.0901 0.0013 13 1 9.0793 -3.7313 0.3960 14 6 8.0469 -5.3893 -0.5094 15 7 7.0504 -5.7142 -1.2931 16 14 9.3446 -6.6599 -0.0727 17 1 8.8858 -7.4552 1.0944 18 1 9.5632 -7.5626 -1.2315 19 1 10.6166 -5.9724 0.2659 20 6 7.1649 -1.8487 0.0011 21 6 6.0652 -1.0419 0.0005 22 6 2.3893 -1.1875 -0.0057 23 8 2.0223 -2.3447 -0.0115 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 2.7521 3.1663 -0.0009 28 1 1.2761 2.7207 -0.8905 29 1 1.2764 2.7214 0.8895 30 1 3.6294 -3.4084 -0.0014 31 1 5.5835 -4.8761 0.0098 32 1 6.9855 -6.6150 -1.6469 33 1 8.1543 -1.4154 0.0022 34 1 6.1845 0.0314 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071152086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:31 Heat of formation + Delta-G solvation = -6.681783 kcal Electronic energy + Delta-G solvation = -19907.053036 eV Core-core repulsion = 16771.079386 eV Total energy + Delta-G solvation = -3135.973650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17853 -38.38680 -37.61089 -36.03352 -34.83225 -33.30424 -30.06161 -29.90199 -29.45914 -27.14139 -24.59469 -24.21418 -21.54249 -21.33949 -19.55788 -19.15108 -17.45842 -17.04060 -16.43163 -15.57059 -15.51714 -15.20755 -14.16782 -13.81512 -13.75166 -13.73430 -13.52745 -13.21057 -12.89892 -12.80797 -12.50023 -12.37009 -12.13760 -12.00653 -11.72966 -11.27247 -11.15986 -10.82285 -10.40414 -10.22543 -9.93730 -9.54381 -9.41871 -9.16968 -8.98318 -7.64452 -7.19056 -6.85408 -4.40319 0.20422 2.42866 2.64449 2.86751 2.98451 3.02062 3.05117 3.07672 3.50224 3.79190 3.86941 4.26153 4.55768 4.83494 4.95388 5.29515 5.36438 5.42617 5.46751 5.61866 5.68164 5.72371 6.01876 6.05501 6.23889 6.36958 6.55890 6.93543 7.01697 7.14122 7.38639 7.48357 7.58715 7.60752 7.95704 7.97935 8.17495 8.22089 8.52666 8.78250 8.86947 10.07924 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037335 B = 0.004554 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.783682 B = 6146.813822 C = 6805.883822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.129 4.129 3 C -0.131 4.131 4 C -0.093 4.093 5 C 0.540 3.460 6 O -0.458 6.458 7 N -0.496 5.496 8 C -0.036 4.036 9 C -0.105 4.105 10 C -0.156 4.156 11 C 0.110 3.890 12 C -0.453 4.453 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.784 5.784 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.215 4.215 21 C -0.094 4.094 22 C 0.540 3.460 23 O -0.454 6.454 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.283 0.717 33 H 0.100 0.900 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 9.571 1.685 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.135 4.135 4 C -0.149 4.149 5 C 0.329 3.671 6 O -0.331 6.331 7 N -0.227 5.227 8 C -0.124 4.124 9 C -0.124 4.124 10 C -0.175 4.175 11 C 0.107 3.893 12 C -0.482 4.482 13 H 0.100 0.900 14 C -0.145 4.145 15 N -0.409 5.409 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.184 1.184 20 C -0.236 4.236 21 C -0.114 4.114 22 C 0.329 3.671 23 O -0.326 6.326 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.637 9.060 1.528 14.056 hybrid contribution 0.676 -0.751 0.023 1.010 sum -9.961 8.310 1.551 13.065 Atomic orbital electron populations 1.20422 0.87142 1.03899 1.03375 1.23050 0.97736 0.92633 0.99967 1.23035 0.92704 0.97610 1.00176 1.20424 1.02619 0.88969 1.02926 1.19078 0.89972 0.81779 0.76225 1.90652 1.37260 1.61580 1.43559 1.43542 1.07732 1.07844 1.63609 1.17313 0.83396 0.89065 1.22661 1.20781 1.00040 0.90630 1.00971 1.20948 0.91241 0.99330 1.06009 1.17771 0.93196 0.91250 0.87071 1.19647 0.97377 0.96441 1.34697 0.90019 1.25990 0.96559 0.99393 0.92527 1.69847 1.29006 1.20854 1.21158 0.86241 0.81203 0.79933 0.79055 1.19186 1.20167 1.18428 1.20631 0.96292 0.93562 1.13067 1.20626 0.90608 0.99809 1.00321 1.19081 0.82448 0.89298 0.76307 1.90672 1.78945 1.19854 1.43135 0.89683 0.90015 0.90187 0.90073 0.89883 0.89886 0.86057 0.85893 0.90571 0.88152 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.22 36.01 0.37 -0.42 16 2 C -0.13 -1.68 6.38 -102.01 -0.65 -2.33 16 3 C -0.13 -1.69 6.38 -102.01 -0.65 -2.34 16 4 C -0.09 -0.78 10.01 36.00 0.36 -0.42 16 5 C 0.54 9.81 7.91 -12.40 -0.10 9.71 16 6 O -0.46 -9.18 14.98 5.45 0.08 -9.09 16 7 N -0.50 -10.21 2.84 -61.30 -0.17 -10.38 16 8 C -0.04 -0.87 6.61 -83.48 -0.55 -1.42 16 9 C -0.10 -2.66 9.27 -39.80 -0.37 -3.03 16 10 C -0.16 -4.18 8.64 -39.26 -0.34 -4.51 16 11 C 0.11 2.98 5.57 -106.80 -0.59 2.39 16 12 C -0.45 -11.98 9.03 -37.85 -0.34 -12.32 16 13 H 0.08 2.06 7.91 -52.48 -0.41 1.65 16 14 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 15 N -0.78 -20.25 11.00 55.55 0.61 -19.64 16 16 Si 0.91 18.46 29.60 -169.99 -5.03 13.43 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 20 C -0.22 -5.49 9.74 -39.26 -0.38 -5.87 16 21 C -0.09 -2.31 9.27 -39.80 -0.37 -2.68 16 22 C 0.54 9.92 7.91 -12.41 -0.10 9.83 16 23 O -0.45 -9.34 14.98 5.45 0.08 -9.26 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.47 7.94 -51.93 -0.41 0.06 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.12 3.01 5.30 -52.48 -0.28 2.73 16 31 H 0.12 3.36 6.21 -52.49 -0.33 3.04 16 32 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 33 H 0.10 2.38 8.06 -52.48 -0.42 1.96 16 34 H 0.12 2.86 5.30 -52.49 -0.28 2.58 16 LS Contribution 296.49 15.07 4.47 4.47 Total: -1.00 -30.51 296.49 -7.15 -37.66 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.38 Total: 4.47 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -3.81 Total: -11.66 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.44 Total: -30.02 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.16 Total: -18.36 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.51 -7.15 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071152086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.979 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds