Wall clock time and date at job start Mon Mar 30 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46834 * 2 1 4 4 C 1.38002 * 119.99484 * 179.97438 * 3 2 1 5 5 N 1.33085 * 120.03606 * 359.97438 * 4 3 2 6 6 C 1.32294 * 120.07045 * 180.02562 * 5 4 3 7 7 Cl 1.73596 * 119.92817 * 180.02562 * 6 5 4 8 8 N 1.32309 * 120.14140 * 0.02562 * 6 5 4 9 9 C 1.33062 * 120.06947 * 359.97438 * 8 6 5 10 10 N 1.38003 * 120.03492 * 179.97438 * 9 8 6 11 11 C 1.46500 * 119.99882 * 0.02562 * 10 9 8 12 12 H 1.09001 * 109.47297 * 34.99604 * 11 10 9 13 13 C 1.53006 * 109.46998 * 274.99965 * 11 10 9 14 14 C 1.50698 * 109.46840 * 155.00138 * 11 10 9 15 15 H 1.07993 * 120.00472 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99554 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00420 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99716 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47510 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47309 * 119.99914 * 18 16 14 21 21 H 1.48498 * 109.47163 * 239.99790 * 18 16 14 22 22 N 1.32855 * 120.03485 * 180.25630 * 4 3 2 23 23 H 1.08994 * 109.47220 * 300.00180 * 1 2 3 24 24 H 1.09001 * 109.46798 * 60.00038 * 1 2 3 25 25 H 1.08996 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46904 * 240.00087 * 2 1 3 27 27 H 1.09001 * 109.46798 * 119.99962 * 2 1 3 28 28 H 0.96995 * 120.00370 * 359.97438 * 3 2 1 29 29 H 0.96995 * 119.99825 * 180.02562 * 10 9 8 30 30 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 31 31 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 32 32 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 33 33 H 0.97001 * 120.00306 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3751 1.6334 0.0005 5 7 4.2405 0.6223 0.0016 6 6 5.5414 0.8632 0.0026 7 17 6.6669 -0.4584 0.0033 8 7 5.9863 2.1093 0.0031 9 6 5.1260 3.1244 0.0021 10 7 5.5908 4.4238 0.0032 11 6 7.0321 4.6861 0.0049 12 1 7.5410 3.9232 -0.5843 13 6 7.5548 4.6531 1.4425 14 6 7.2964 6.0432 -0.5947 15 1 6.4731 6.6498 -0.9419 16 6 8.5893 6.5104 -0.7000 17 7 9.5919 5.7719 -0.2768 18 14 8.9170 8.1923 -1.4438 19 1 7.6297 8.8177 -1.8399 20 1 9.5983 9.0521 -0.4429 21 1 9.7835 8.0439 -2.6406 22 7 3.8188 2.8856 0.0057 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3880 2.1185 -0.0004 29 1 4.9632 5.1633 0.0028 30 1 8.6273 4.8478 1.4437 31 1 7.0459 5.4159 2.0316 32 1 7.3636 3.6715 1.8762 33 1 10.5015 6.1008 -0.3506 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071766810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:15 Heat of formation + Delta-G solvation = 49.969026 kcal Electronic energy + Delta-G solvation = -18218.115026 eV Core-core repulsion = 15146.750592 eV Total energy + Delta-G solvation = -3071.364434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.46145 -38.55277 -38.20701 -37.18639 -35.14666 -34.26804 -33.25009 -30.92114 -30.29292 -27.34859 -25.66181 -25.01082 -23.36574 -22.43848 -20.08602 -19.59771 -18.42488 -17.23607 -17.11670 -16.89940 -16.32660 -15.86969 -15.72819 -15.34879 -15.08088 -14.47996 -14.22829 -13.69930 -13.39548 -13.17961 -12.94731 -12.75447 -12.66829 -12.62428 -12.55491 -12.28574 -12.12282 -11.96726 -11.60694 -11.07323 -10.68046 -10.64612 -10.48575 -9.62480 -9.39310 -8.17330 -6.33788 -0.08195 0.20154 0.34653 1.45193 1.46476 1.57232 1.64856 2.12586 2.44133 2.86344 3.13694 3.31358 3.41343 4.15982 4.29517 4.39092 4.59450 4.77542 4.96086 5.04813 5.09839 5.11136 5.27520 5.28167 5.34233 5.49484 5.64203 5.81218 5.99325 6.01390 6.20267 6.43439 6.68457 6.89412 7.34743 7.49729 8.88842 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.004649 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.961667 B = 6021.859994 C = 6930.246963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 N -0.671 5.671 4 C 0.624 3.376 5 N -0.635 5.635 6 C 0.461 3.539 7 Cl 0.044 6.956 8 N -0.640 5.640 9 C 0.628 3.372 10 N -0.651 5.651 11 C 0.284 3.716 12 H 0.023 0.977 13 C -0.130 4.130 14 C -0.551 4.551 15 H 0.068 0.932 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.282 1.282 22 N -0.665 5.665 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.424 0.576 29 H 0.415 0.585 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.017 0.983 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.916 -10.462 0.949 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.005 3.995 3 N -0.310 5.310 4 C 0.258 3.742 5 N -0.376 5.376 6 C 0.156 3.844 7 Cl 0.071 6.929 8 N -0.379 5.379 9 C 0.263 3.737 10 N -0.283 5.283 11 C 0.181 3.819 12 H 0.041 0.959 13 C -0.189 4.189 14 C -0.590 4.590 15 H 0.086 0.914 16 C -0.179 4.179 17 N -0.548 5.548 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.208 1.208 22 N -0.408 5.408 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.264 0.736 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.496 -10.660 0.972 18.020 hybrid contribution 0.351 1.162 -0.291 1.249 sum -14.145 -9.497 0.680 17.051 Atomic orbital electron populations 1.21976 0.91578 1.04550 1.03183 1.21510 0.95890 0.79815 1.02334 1.44303 0.99117 1.10768 1.76813 1.19225 0.88271 0.82908 0.83792 1.67980 1.01553 1.35765 1.32307 1.22725 0.86985 0.87640 0.87061 1.98413 1.57568 1.41260 1.95637 1.68093 1.40273 0.99052 1.30526 1.19181 0.83444 0.87427 0.83628 1.45001 1.10043 1.00935 1.72361 1.18566 0.73730 0.95750 0.93844 0.95872 1.21895 1.03013 0.96960 0.97056 1.21510 0.93528 1.02024 1.41915 0.91410 1.25670 0.95545 1.01315 0.95377 1.70029 0.99660 1.38621 1.46459 0.85332 0.78326 0.78977 0.77899 1.18901 1.20336 1.20797 1.68070 1.14772 1.22707 1.35228 0.91331 0.91373 0.88819 0.91760 0.91708 0.73622 0.74749 0.90940 0.94918 0.96399 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 10.03 71.98 0.72 -0.75 16 2 C 0.13 2.16 6.40 86.38 0.55 2.71 16 3 N -0.67 -15.33 5.69 -350.64 -1.99 -17.32 16 4 C 0.62 20.60 8.47 261.26 2.21 22.81 16 5 N -0.63 -21.96 9.70 -193.21 -1.87 -23.84 16 6 C 0.46 17.54 8.25 180.58 1.49 19.03 16 7 Cl 0.04 1.37 29.30 -2.72 -0.08 1.29 16 8 N -0.64 -27.99 9.33 -193.21 -1.80 -29.79 16 9 C 0.63 26.86 8.45 261.26 2.21 29.07 16 10 N -0.65 -28.62 5.20 -333.62 -1.73 -30.35 16 11 C 0.28 14.40 2.57 44.25 0.11 14.51 16 12 H 0.02 1.35 7.53 -2.39 -0.02 1.33 16 13 C -0.13 -6.45 9.27 71.98 0.67 -5.78 16 14 C -0.55 -29.01 8.73 25.60 0.22 -28.79 16 15 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.02 1.15 5.30 84.66 0.45 1.60 16 17 N -0.91 -50.67 11.32 21.45 0.24 -50.42 16 18 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 N -0.66 -24.97 10.57 -200.61 -2.12 -27.09 16 23 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.42 8.03 8.59 -92.71 -0.80 7.23 16 29 H 0.41 16.66 8.66 -92.71 -0.80 15.85 16 30 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 31 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -61.46 303.34 0.86 -60.60 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.44 Total: 18.76 kcal Atomic # 6 Polarization: 45.77 SS G_CDS: 8.64 Total: 54.41 kcal Atomic # 7 Polarization: -169.54 SS G_CDS: -9.28 Total: -178.82 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 17 Polarization: 1.37 SS G_CDS: -0.08 Total: 1.29 kcal Total: -61.46 0.86 -60.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071766810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.564 kcal (2) G-P(sol) polarization free energy of solvation -61.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds