Wall clock time and date at job start Mon Mar 30 2020 04:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46709 * 2 1 4 4 C 1.38002 * 119.99985 * 179.97438 * 3 2 1 5 5 N 1.33094 * 120.03149 * 0.02562 * 4 3 2 6 6 C 1.32286 * 120.06569 * 180.02562 * 5 4 3 7 7 Cl 1.73605 * 119.92423 * 179.97438 * 6 5 4 8 8 N 1.32311 * 120.14945 * 0.02562 * 6 5 4 9 9 C 1.33065 * 120.06493 * 359.97438 * 8 6 5 10 10 N 1.37997 * 120.03314 * 180.02562 * 9 8 6 11 11 C 1.46501 * 120.00298 * 359.97438 * 10 9 8 12 12 C 1.52994 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46993 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99561 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00112 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99981 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47111 * 59.99819 * 17 15 13 19 19 H 1.48505 * 109.47080 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46991 * 299.99689 * 17 15 13 21 21 N 1.32854 * 120.03725 * 180.02562 * 4 3 2 22 22 H 1.09000 * 109.47540 * 299.99557 * 1 2 3 23 23 H 1.09000 * 109.47385 * 60.00328 * 1 2 3 24 24 H 1.09003 * 109.47023 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47112 * 240.00122 * 2 1 3 26 26 H 1.08993 * 109.47103 * 120.00272 * 2 1 3 27 27 H 0.97001 * 120.00464 * 0.02562 * 3 2 1 28 28 H 0.97007 * 120.00142 * 179.97438 * 10 9 8 29 29 H 1.09001 * 109.46528 * 300.00120 * 11 10 9 30 30 H 1.08995 * 109.47057 * 59.99377 * 11 10 9 31 31 H 1.08995 * 109.47264 * 299.99154 * 12 11 10 32 32 H 1.08995 * 109.47645 * 59.99745 * 12 11 10 33 33 H 0.96998 * 120.00729 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3750 1.6335 0.0005 5 7 4.2405 0.6224 0.0005 6 6 5.5412 0.8635 0.0016 7 17 6.6669 -0.4582 0.0022 8 7 5.9861 2.1095 0.0031 9 6 5.1258 3.1246 0.0031 10 7 5.5906 4.4239 0.0042 11 6 7.0319 4.6864 0.0059 12 6 7.2752 6.1968 0.0061 13 6 8.7579 6.4668 0.0073 14 1 9.4566 5.6433 0.0081 15 6 9.2222 7.7650 0.0082 16 7 8.3713 8.7677 0.0076 17 14 11.0600 8.0995 0.0103 18 1 11.6738 7.4998 -1.2017 19 1 11.2963 9.5657 0.0105 20 1 11.6711 7.4991 1.2233 21 7 3.8185 2.8858 0.0010 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.3879 2.1185 0.0004 28 1 4.9629 5.1636 0.0038 29 1 7.4803 4.2455 0.8962 30 1 7.4823 4.2463 -0.8837 31 1 6.8269 6.6373 -0.8844 32 1 6.8247 6.6374 0.8955 33 1 8.6980 9.6811 0.0079 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071776578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:07 Heat of formation + Delta-G solvation = 41.777470 kcal Electronic energy + Delta-G solvation = -17628.636569 eV Core-core repulsion = 14556.916922 eV Total energy + Delta-G solvation = -3071.719646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.56526 -38.54615 -38.25802 -37.14509 -35.32249 -34.40880 -33.63716 -31.21480 -30.77050 -26.89019 -25.75470 -24.67073 -23.23340 -22.87728 -19.88122 -19.81276 -18.48583 -17.49348 -17.28895 -16.51531 -16.48282 -15.96181 -15.95800 -15.50909 -15.46079 -15.16700 -14.26053 -13.84199 -13.51119 -13.24318 -13.18733 -12.82407 -12.68498 -12.59491 -12.51729 -12.32253 -11.91274 -11.65146 -11.61312 -11.42420 -10.75609 -10.71762 -10.57354 -9.68052 -9.62197 -8.22424 -6.32999 -0.17403 0.13655 0.22294 1.43104 1.46437 1.49808 1.55203 1.96950 2.43169 2.76018 3.12925 3.15942 3.29856 4.13294 4.26606 4.27931 4.47438 4.52161 4.57679 4.86608 4.98565 5.09585 5.15122 5.22231 5.30664 5.42499 5.58039 5.74060 5.92056 5.95508 6.13558 6.19412 6.63124 6.81293 7.34198 7.36427 8.89580 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.003635 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.166556 B = 7700.475886 C = 8742.592435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.127 3.873 3 N -0.669 5.669 4 C 0.626 3.374 5 N -0.630 5.630 6 C 0.465 3.535 7 Cl 0.050 6.950 8 N -0.641 5.641 9 C 0.631 3.369 10 N -0.666 5.666 11 C 0.158 3.842 12 C 0.021 3.979 13 C -0.543 4.543 14 H 0.065 0.935 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.267 1.267 21 N -0.662 5.662 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.425 0.575 28 H 0.421 0.579 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 -18.555 -0.010 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.004 3.996 3 N -0.308 5.308 4 C 0.260 3.740 5 N -0.371 5.371 6 C 0.159 3.841 7 Cl 0.078 6.922 8 N -0.380 5.380 9 C 0.266 3.734 10 N -0.301 5.301 11 C 0.035 3.965 12 C -0.016 4.016 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.192 1.192 21 N -0.404 5.404 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.265 0.735 28 H 0.260 0.740 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.722 -18.593 -0.011 23.109 hybrid contribution 0.612 1.025 0.001 1.194 sum -13.110 -17.568 -0.010 21.921 Atomic orbital electron populations 1.21985 0.91700 1.04577 1.03179 1.21530 0.95849 0.79710 1.02508 1.44377 0.99241 1.10911 1.76245 1.19205 0.88286 0.82781 0.83696 1.68018 1.01712 1.35729 1.31608 1.22752 0.87019 0.87627 0.86661 1.98432 1.57227 1.41040 1.95541 1.68039 1.40038 0.99023 1.30940 1.19032 0.83611 0.87019 0.83698 1.44607 1.09373 1.01711 1.74436 1.21373 0.76655 0.97467 1.00986 1.19151 0.96531 0.89681 0.96278 1.21416 0.92583 0.92711 1.51433 0.91659 1.25888 1.02943 0.95992 0.94453 1.70063 1.36360 0.99372 1.51076 0.85489 0.79302 0.76973 0.79242 1.19190 1.20906 1.19180 1.68045 1.14892 1.22834 1.34667 0.91379 0.91384 0.88821 0.91519 0.91523 0.73534 0.74034 0.92338 0.92344 0.97531 0.97527 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.03 71.98 0.72 -0.45 16 2 C 0.13 1.79 6.40 86.38 0.55 2.34 16 3 N -0.67 -13.14 5.69 -350.67 -1.99 -15.14 16 4 C 0.63 18.02 8.47 261.26 2.21 20.23 16 5 N -0.63 -18.82 9.70 -193.20 -1.87 -20.69 16 6 C 0.46 14.93 8.25 180.58 1.49 16.42 16 7 Cl 0.05 1.29 29.30 -2.72 -0.08 1.21 16 8 N -0.64 -23.38 9.70 -193.20 -1.87 -25.25 16 9 C 0.63 22.98 8.47 261.26 2.21 25.19 16 10 N -0.67 -24.65 5.69 -350.67 -1.99 -26.64 16 11 C 0.16 6.62 5.62 86.38 0.49 7.10 16 12 C 0.02 1.06 5.09 29.85 0.15 1.21 16 13 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 14 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -54.68 13.29 21.44 0.28 -54.39 16 17 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 N -0.66 -21.74 10.57 -200.61 -2.12 -23.86 16 22 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.42 6.85 8.59 -92.71 -0.80 6.05 16 28 H 0.42 14.58 8.59 -92.70 -0.80 13.79 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -63.95 308.21 0.46 -63.49 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.44 Total: 12.74 kcal Atomic # 6 Polarization: 34.71 SS G_CDS: 8.53 Total: 43.24 kcal Atomic # 7 Polarization: -156.40 SS G_CDS: -9.57 Total: -165.98 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: 1.29 SS G_CDS: -0.08 Total: 1.21 kcal Total: -63.95 0.46 -63.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071776578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.271 kcal (2) G-P(sol) polarization free energy of solvation -63.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds