Wall clock time and date at job start Mon Mar 30 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.37996 * 119.99737 * 180.27951 * 3 2 1 5 5 N 1.33090 * 120.03890 * 359.44836 * 4 3 2 6 6 C 1.32285 * 120.07025 * 179.72370 * 5 4 3 7 7 Cl 1.73605 * 119.92686 * 180.25164 * 6 5 4 8 8 N 1.32305 * 120.14297 * 0.55612 * 6 5 4 9 9 C 1.33058 * 120.06989 * 359.71666 * 8 6 5 10 10 N 1.38007 * 120.03493 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99759 * 180.02562 * 10 9 8 12 12 C 1.46493 * 119.99932 * 0.02634 * 10 9 8 13 13 C 1.50695 * 109.47484 * 89.99807 * 12 10 9 14 14 H 1.08007 * 119.99958 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00464 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99913 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99955 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47180 * 89.99648 * 17 15 13 19 19 H 1.48501 * 109.46863 * 210.00097 * 17 15 13 20 20 H 1.48504 * 109.46887 * 329.99842 * 17 15 13 21 21 N 1.32858 * 120.03622 * 179.72306 * 4 3 2 22 22 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 23 23 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 25 25 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 26 26 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 27 27 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.46969 * 90.00350 * 11 10 9 29 29 H 1.09000 * 109.46916 * 209.99732 * 11 10 9 30 30 H 1.08993 * 109.47400 * 329.99849 * 11 10 9 31 31 H 1.08999 * 109.47335 * 209.99976 * 12 10 9 32 32 H 1.09007 * 109.47509 * 329.99699 * 12 10 9 33 33 H 0.97010 * 119.99719 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3751 1.6333 -0.0058 5 7 4.2406 0.6223 -0.0004 6 6 5.5413 0.8632 -0.0115 7 17 6.6670 -0.4585 -0.0109 8 7 5.9862 2.1092 -0.0169 9 6 5.1260 3.1242 -0.0170 10 7 5.5908 4.4236 -0.0221 11 6 4.6430 5.5407 -0.0216 12 6 7.0321 4.6859 -0.0282 13 6 7.5211 4.7721 -1.4510 14 1 6.8277 4.6438 -2.2690 15 6 8.8537 5.0146 -1.7085 16 7 9.2805 5.0893 -2.9502 17 14 10.0533 5.2358 -0.2937 18 1 10.6222 3.9170 0.0836 19 1 11.1492 6.1465 -0.7117 20 1 9.3418 5.8197 0.8717 21 7 3.8188 2.8856 -0.0114 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 4.4117 5.8204 1.0062 29 1 5.0846 6.3922 -0.5393 30 1 3.7274 5.2406 -0.5312 31 1 7.2321 5.6279 0.4824 32 1 7.5509 3.8768 0.4860 33 1 10.2181 5.2596 -3.1314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087801162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:10 Heat of formation + Delta-G solvation = 80.206924 kcal Electronic energy + Delta-G solvation = -18431.671650 eV Core-core repulsion = 15361.618430 eV Total energy + Delta-G solvation = -3070.053220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00443 -37.28318 -36.82393 -35.85979 -33.10595 -32.72909 -31.95280 -29.89680 -28.42570 -26.29795 -23.89327 -23.63337 -22.51845 -20.84096 -18.35569 -17.92567 -16.98104 -15.88710 -15.75197 -15.33859 -14.83822 -14.70052 -14.36507 -13.83837 -13.59607 -13.25708 -12.57807 -12.49215 -12.40682 -11.98914 -11.89219 -11.77495 -11.52337 -11.17659 -11.12691 -10.81185 -10.55953 -10.22797 -10.02549 -9.53610 -9.18123 -8.98916 -8.60304 -8.43743 -7.50869 -6.10476 -4.10130 1.42524 1.64332 1.82747 2.86995 3.28198 3.33173 3.35973 3.42644 4.37100 4.37922 4.62355 4.72869 4.91388 4.94259 5.17763 5.22029 5.53813 5.68768 5.77367 5.83908 5.91914 6.01100 6.24276 6.48878 6.63710 6.81579 6.89145 7.30053 7.40600 7.53598 7.77957 8.00313 8.45187 8.88474 8.94844 9.48262 11.02754 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.005597 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.273165 B = 5001.561016 C = 5868.150923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.691 5.691 4 C 0.636 3.364 5 N -0.642 5.642 6 C 0.471 3.529 7 Cl 0.021 6.979 8 N -0.598 5.598 9 C 0.642 3.358 10 N -0.541 5.541 11 C 0.103 3.897 12 C 0.223 3.777 13 C -0.529 4.529 14 H 0.074 0.926 15 C 0.076 3.924 16 N -0.895 5.895 17 Si 0.875 3.125 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.658 5.658 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.414 0.586 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.359 -7.719 7.841 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.008 3.992 3 N -0.331 5.331 4 C 0.270 3.730 5 N -0.383 5.383 6 C 0.165 3.835 7 Cl 0.048 6.952 8 N -0.334 5.334 9 C 0.279 3.721 10 N -0.252 5.252 11 C -0.041 4.041 12 C 0.102 3.898 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.127 4.127 16 N -0.533 5.533 17 Si 0.702 3.298 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.400 5.400 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.251 0.749 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.032 -7.677 7.740 17.769 hybrid contribution 0.675 0.234 0.460 0.849 sum -13.357 -7.444 8.200 17.351 Atomic orbital electron populations 1.22019 0.94594 1.03145 1.02535 1.21260 0.93511 0.81671 1.02726 1.43989 1.00849 1.08953 1.79347 1.18745 0.86688 0.83473 0.84104 1.67840 1.02072 1.35927 1.32446 1.22347 0.86009 0.87541 0.87603 1.98413 1.58234 1.42684 1.95830 1.68084 1.39349 0.98002 1.27980 1.18785 0.82610 0.86941 0.83714 1.46502 1.08840 0.99519 1.70380 1.21617 0.93067 0.88559 1.00825 1.19890 0.74042 0.96945 0.98915 1.21242 0.94830 1.49813 0.90850 0.90833 1.24804 0.97847 0.94475 0.95541 1.69894 1.15842 1.49084 1.18517 0.86876 0.81350 0.78791 0.82827 1.19644 1.21078 1.19079 1.67966 1.15831 1.21639 1.34569 0.91963 0.90642 0.92023 0.91358 0.91404 0.74869 0.93476 0.90381 0.90841 0.94626 0.93581 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.03 37.16 0.37 -0.69 16 2 C 0.13 1.30 6.40 -4.04 -0.03 1.27 16 3 N -0.69 -8.65 5.69 -62.18 -0.35 -9.01 16 4 C 0.64 11.01 8.47 -322.16 -2.73 8.28 16 5 N -0.64 -11.73 9.70 -12.42 -0.12 -11.85 16 6 C 0.47 9.38 8.25 -91.29 -0.75 8.63 16 7 Cl 0.02 0.35 29.30 -51.86 -1.52 -1.17 16 8 N -0.60 -13.49 9.24 -12.42 -0.11 -13.61 16 9 C 0.64 13.96 8.19 -322.16 -2.64 11.32 16 10 N -0.54 -11.64 2.94 -185.19 -0.55 -12.19 16 11 C 0.10 1.75 10.45 59.85 0.63 2.37 16 12 C 0.22 5.33 4.24 -5.20 -0.02 5.31 16 13 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 14 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 17 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 21 N -0.66 -12.60 9.29 -14.76 -0.14 -12.74 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.41 4.37 8.59 -40.82 -0.35 4.02 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 30 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 31 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 32 H 0.05 1.15 6.79 -51.93 -0.35 0.80 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -32.38 302.97 -11.73 -44.11 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.00 Total: -1.39 kcal Atomic # 6 Polarization: 28.94 SS G_CDS: -5.61 Total: 23.33 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -0.50 Total: -85.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.38 -11.73 -44.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087801162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.322 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds