Wall clock time and date at job start Mon Mar 30 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.37996 * 119.99737 * 180.27951 * 3 2 1 5 5 N 1.33090 * 120.03890 * 359.44836 * 4 3 2 6 6 C 1.32285 * 120.07025 * 179.72370 * 5 4 3 7 7 Cl 1.73605 * 119.92686 * 180.25164 * 6 5 4 8 8 N 1.32305 * 120.14297 * 0.55612 * 6 5 4 9 9 C 1.33058 * 120.06989 * 359.71666 * 8 6 5 10 10 N 1.38007 * 120.03493 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99759 * 180.02562 * 10 9 8 12 12 C 1.46493 * 119.99932 * 0.02634 * 10 9 8 13 13 C 1.50695 * 109.47484 * 89.99807 * 12 10 9 14 14 H 1.08007 * 119.99958 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00464 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99913 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99955 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47180 * 89.99648 * 17 15 13 19 19 H 1.48501 * 109.46863 * 210.00097 * 17 15 13 20 20 H 1.48504 * 109.46887 * 329.99842 * 17 15 13 21 21 N 1.32858 * 120.03622 * 179.72306 * 4 3 2 22 22 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 23 23 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 25 25 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 26 26 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 27 27 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.46969 * 90.00350 * 11 10 9 29 29 H 1.09000 * 109.46916 * 209.99732 * 11 10 9 30 30 H 1.08993 * 109.47400 * 329.99849 * 11 10 9 31 31 H 1.08999 * 109.47335 * 209.99976 * 12 10 9 32 32 H 1.09007 * 109.47509 * 329.99699 * 12 10 9 33 33 H 0.97010 * 119.99719 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3751 1.6333 -0.0058 5 7 4.2406 0.6223 -0.0004 6 6 5.5413 0.8632 -0.0115 7 17 6.6670 -0.4585 -0.0109 8 7 5.9862 2.1092 -0.0169 9 6 5.1260 3.1242 -0.0170 10 7 5.5908 4.4236 -0.0221 11 6 4.6430 5.5407 -0.0216 12 6 7.0321 4.6859 -0.0282 13 6 7.5211 4.7721 -1.4510 14 1 6.8277 4.6438 -2.2690 15 6 8.8537 5.0146 -1.7085 16 7 9.2805 5.0893 -2.9502 17 14 10.0533 5.2358 -0.2937 18 1 10.6222 3.9170 0.0836 19 1 11.1492 6.1465 -0.7117 20 1 9.3418 5.8197 0.8717 21 7 3.8188 2.8856 -0.0114 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 4.4117 5.8204 1.0062 29 1 5.0846 6.3922 -0.5393 30 1 3.7274 5.2406 -0.5312 31 1 7.2321 5.6279 0.4824 32 1 7.5509 3.8768 0.4860 33 1 10.2181 5.2596 -3.1314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087801162.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:10 Heat of formation + Delta-G solvation = 62.379558 kcal Electronic energy + Delta-G solvation = -18432.444703 eV Core-core repulsion = 15361.618430 eV Total energy + Delta-G solvation = -3070.826273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.089 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.47194 -38.68808 -38.22126 -37.19553 -34.90087 -34.25670 -33.55518 -30.98540 -30.18689 -27.81516 -25.34309 -25.17033 -23.69287 -22.38302 -19.81675 -19.32201 -19.10791 -17.33725 -17.15536 -16.74664 -16.24777 -15.86739 -15.78586 -15.42391 -15.09503 -14.81546 -14.41520 -13.69412 -13.64088 -13.22299 -13.15971 -12.93048 -12.72225 -12.66397 -12.56024 -12.42029 -12.14446 -11.87391 -11.70724 -11.53797 -10.79248 -10.66117 -10.53048 -9.62128 -9.13907 -8.29394 -6.34948 -0.08527 0.19699 0.34169 1.38125 1.43063 1.49878 1.58420 1.98386 2.35600 2.86645 3.05774 3.19956 3.38490 4.15226 4.18497 4.29099 4.54153 4.59842 4.61901 4.74925 4.91069 4.93555 5.06215 5.10876 5.28327 5.32737 5.35913 5.46270 5.92263 5.99031 6.17484 6.36701 6.63331 6.66635 7.27057 7.43922 8.87681 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.005597 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.273165 B = 5001.561016 C = 5868.150923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 N -0.670 5.670 4 C 0.622 3.378 5 N -0.636 5.636 6 C 0.461 3.539 7 Cl 0.040 6.960 8 N -0.638 5.638 9 C 0.627 3.373 10 N -0.555 5.555 11 C 0.103 3.897 12 C 0.235 3.765 13 C -0.530 4.530 14 H 0.022 0.978 15 C 0.017 3.983 16 N -0.946 5.946 17 Si 0.946 3.054 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.237 1.237 21 N -0.656 5.656 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.425 0.575 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 -7.980 9.787 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 N -0.309 5.309 4 C 0.257 3.743 5 N -0.377 5.377 6 C 0.155 3.845 7 Cl 0.068 6.932 8 N -0.376 5.376 9 C 0.264 3.736 10 N -0.267 5.267 11 C -0.039 4.039 12 C 0.114 3.886 13 C -0.569 4.569 14 H 0.041 0.959 15 C -0.181 4.181 16 N -0.586 5.586 17 Si 0.768 3.232 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.160 1.160 21 N -0.399 5.399 22 H 0.085 0.915 23 H 0.111 0.889 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.264 0.736 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.405 -7.964 9.700 19.870 hybrid contribution 0.905 0.179 -0.229 0.951 sum -14.500 -7.785 9.470 18.988 Atomic orbital electron populations 1.21972 0.91485 1.04540 1.03221 1.21498 0.95937 0.79866 1.02235 1.44266 0.99039 1.10732 1.76907 1.19244 0.88270 0.82952 0.83843 1.67959 1.01542 1.35925 1.32296 1.22680 0.86957 0.87584 0.87263 1.98409 1.57723 1.41399 1.95666 1.68046 1.40538 0.99110 1.29884 1.19014 0.83566 0.86949 0.84089 1.46524 1.08445 1.00542 1.71172 1.21785 0.92269 0.87203 1.02652 1.19563 0.75789 0.97412 0.95883 1.21398 0.94295 1.49300 0.91872 0.95943 1.25768 0.99934 0.93990 0.98451 1.70054 1.16518 1.50776 1.21259 0.85746 0.78656 0.78887 0.79861 1.19582 1.20507 1.15965 1.68022 1.14505 1.22377 1.34972 0.91468 0.88878 0.91113 0.92130 0.91589 0.73561 0.90643 0.90543 0.90421 0.92541 0.94323 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.03 71.98 0.72 -0.79 16 2 C 0.13 2.23 6.40 86.38 0.55 2.78 16 3 N -0.67 -15.49 5.69 -350.64 -1.99 -17.48 16 4 C 0.62 20.91 8.47 261.26 2.21 23.12 16 5 N -0.64 -22.81 9.70 -193.21 -1.87 -24.68 16 6 C 0.46 18.30 8.25 180.58 1.49 19.79 16 7 Cl 0.04 1.35 29.30 -2.72 -0.08 1.27 16 8 N -0.64 -28.96 9.24 -193.21 -1.79 -30.75 16 9 C 0.63 27.22 8.19 261.26 2.14 29.36 16 10 N -0.55 -23.68 2.94 -739.81 -2.18 -25.86 16 11 C 0.10 3.38 10.45 127.77 1.34 4.72 16 12 C 0.24 11.16 4.24 85.63 0.36 11.52 16 13 C -0.53 -30.55 9.94 25.60 0.25 -30.30 16 14 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 15 C 0.02 0.97 5.47 84.66 0.46 1.43 16 16 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 17 Si 0.95 43.15 27.47 68.60 1.88 45.04 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 21 N -0.66 -24.66 9.29 -200.61 -1.86 -26.52 16 22 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 23 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.42 7.97 8.59 -92.71 -0.80 7.17 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 30 H 0.08 2.45 7.37 -2.39 -0.02 2.43 16 31 H 0.06 2.45 7.13 -2.39 -0.02 2.43 16 32 H 0.04 1.90 6.79 -2.38 -0.02 1.88 16 33 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -71.80 302.97 2.23 -69.57 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.29 Total: 6.66 kcal Atomic # 6 Polarization: 52.11 SS G_CDS: 9.53 Total: 61.65 kcal Atomic # 7 Polarization: -174.79 SS G_CDS: -9.40 Total: -184.19 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 17 Polarization: 1.35 SS G_CDS: -0.08 Total: 1.27 kcal Total: -71.80 2.23 -69.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087801162.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.950 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds