Wall clock time and date at job start Mon Mar 30 2020 04:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48508 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47284 * 300.00516 * 3 2 1 6 6 H 1.48502 * 109.47194 * 60.00221 * 3 2 1 7 7 C 1.40275 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.40372 * 119.99276 * 359.97438 * 7 2 1 10 10 N 1.33067 * 126.30788 * 180.32423 * 9 7 2 11 11 C 1.32239 * 109.79540 * 180.13382 * 10 9 7 12 12 C 1.50700 * 125.15391 * 179.82177 * 11 10 9 13 13 H 1.08993 * 109.69668 * 359.16838 * 12 11 10 14 14 C 1.53407 * 109.69550 * 119.72718 * 12 11 10 15 15 O 1.42827 * 108.38175 * 184.40811 * 14 12 11 16 16 C 1.35845 * 117.85646 * 310.81570 * 15 14 12 17 17 C 1.39147 * 118.49487 * 196.98448 * 16 15 14 18 18 C 1.37972 * 120.21340 * 180.43459 * 17 16 15 19 19 C 1.38290 * 119.95654 * 359.97438 * 18 17 16 20 20 C 1.38098 * 119.98539 * 359.91422 * 19 18 17 21 21 C 1.38369 * 121.80757 * 17.23704 * 16 15 14 22 22 C 1.50764 * 121.40292 * 359.48223 * 21 16 15 23 23 N 1.31399 * 109.68292 * 359.56100 * 11 10 9 24 24 N 1.37017 * 126.32144 * 359.97438 * 9 7 2 25 25 H 0.97005 * 127.01654 * 0.06229 * 24 9 7 26 26 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.68298 * 304.12945 * 14 12 11 28 28 H 1.08997 * 109.68683 * 64.67813 * 14 12 11 29 29 H 1.08000 * 119.89477 * 0.42543 * 17 16 15 30 30 H 1.07997 * 120.02132 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.00298 * 179.89856 * 19 18 17 32 32 H 1.08005 * 119.84698 * 180.02562 * 20 19 18 33 33 H 1.08997 * 109.43559 * 257.77635 * 22 21 16 34 34 H 1.09002 * 109.40622 * 137.88718 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7005 1.3463 -0.0006 5 1 1.8816 2.3965 -1.2124 6 1 1.8817 2.3964 1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0877 -1.2148 -0.0010 9 6 1.3058 -2.4304 -0.0005 10 7 1.8404 -3.6490 0.0050 11 6 0.8809 -4.5589 0.0002 12 6 1.0991 -6.0500 0.0003 13 1 2.1676 -6.2649 -0.0099 14 6 0.4597 -6.6661 1.2513 15 8 0.7708 -8.0598 1.2763 16 6 0.5552 -8.7787 0.1440 17 6 0.5037 -10.1660 0.2382 18 6 0.2955 -10.9313 -0.8908 19 6 0.1369 -10.3190 -2.1206 20 6 0.1851 -8.9422 -2.2174 21 6 0.3927 -8.1687 -1.0873 22 6 0.4357 -6.6687 -1.2327 23 7 -0.2916 -3.9658 0.0009 24 7 -0.0561 -2.5811 0.0004 25 1 -0.7217 -1.8755 0.0004 26 1 -0.4850 0.8401 0.0004 27 1 0.8603 -6.1845 2.1434 28 1 -0.6213 -6.5317 1.2152 29 1 0.6272 -10.6454 1.1981 30 1 0.2565 -12.0079 -0.8142 31 1 -0.0245 -10.9173 -3.0050 32 1 0.0605 -8.4663 -3.1789 33 1 -0.5797 -6.2845 -1.3295 34 1 1.0087 -6.4073 -2.1223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088043739.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:25 Heat of formation + Delta-G solvation = 41.963217 kcal Electronic energy + Delta-G solvation = -19674.960184 eV Core-core repulsion = 16573.388691 eV Total energy + Delta-G solvation = -3101.571493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.61294 -39.77295 -37.33210 -34.72729 -33.74304 -31.12410 -30.22341 -30.14145 -28.89884 -26.03276 -25.49101 -23.82192 -22.41878 -21.08848 -19.89181 -18.52255 -17.77759 -17.57915 -16.18548 -15.91301 -15.47005 -15.00360 -14.76830 -14.33093 -13.70121 -13.61980 -13.54263 -13.24402 -12.99347 -12.76370 -12.48366 -11.75112 -11.54860 -11.50209 -11.43414 -11.25945 -10.80535 -10.62011 -10.41920 -10.27198 -9.93877 -9.71636 -8.68732 -8.36127 -8.30810 -8.09949 -7.98257 -7.22494 -4.96741 1.40424 1.52621 2.76112 2.93744 3.01923 3.33394 3.49715 3.70973 3.85751 4.03534 4.54928 4.85437 4.89772 5.00964 5.10572 5.15870 5.32599 5.40440 5.43067 5.58777 5.62789 5.85240 5.93176 5.96329 6.07144 6.30350 6.36878 6.39122 6.56516 6.62287 6.83836 6.88459 6.88766 7.49324 7.63015 7.95395 8.10266 8.37374 8.45962 9.29112 9.82862 10.02489 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.051441 B = 0.003678 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.179038 B = 7610.112176 C = 7752.357690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.073 3.927 3 Si 0.945 3.055 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.426 4.426 8 H 0.104 0.896 9 C 0.412 3.588 10 N -0.626 5.626 11 C 0.215 3.785 12 C -0.016 4.016 13 H 0.097 0.903 14 C 0.075 3.925 15 O -0.316 6.316 16 C 0.134 3.866 17 C -0.153 4.153 18 C -0.095 4.095 19 C -0.157 4.157 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.069 4.069 23 N -0.402 5.402 24 N -0.505 5.505 25 H 0.440 0.560 26 H 0.293 0.707 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -11.306 -1.697 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.145 4.145 3 Si 0.768 3.232 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.122 0.878 9 C 0.158 3.842 10 N -0.364 5.364 11 C -0.069 4.069 12 C -0.038 4.038 13 H 0.116 0.884 14 C 0.000 4.000 15 O -0.230 6.230 16 C 0.088 3.912 17 C -0.171 4.171 18 C -0.113 4.113 19 C -0.176 4.176 20 C -0.103 4.103 21 C -0.149 4.149 22 C -0.107 4.107 23 N -0.238 5.238 24 N -0.232 5.232 25 H 0.295 0.705 26 H 0.105 0.895 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.105 0.895 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.308 -11.701 -1.498 11.869 hybrid contribution -0.185 1.664 -0.207 1.687 sum -1.493 -10.037 -1.705 10.290 Atomic orbital electron populations 1.68737 1.08053 1.30721 1.39145 1.26072 0.94922 1.02494 0.90977 0.85642 0.80472 0.78448 0.78619 1.17946 1.19621 1.19608 1.18740 0.95557 0.86328 1.46137 0.87783 1.20791 0.81169 0.92753 0.89480 1.70720 1.32085 0.97598 1.36023 1.22847 0.88312 0.94828 1.00875 1.19792 1.01372 0.87635 0.94959 0.88450 1.23023 1.00523 0.77166 0.99315 1.85986 1.81421 1.22608 1.32975 1.18778 0.95931 0.91061 0.85399 1.20568 1.06071 0.90808 0.99669 1.20853 0.99000 0.99375 0.92072 1.20956 1.04402 0.94548 0.97669 1.20914 0.98233 0.93581 0.97600 1.19986 1.05717 0.96479 0.92743 1.20535 1.02466 0.89185 0.98493 1.77542 1.22278 0.89565 1.34404 1.48673 1.08079 1.04059 1.62344 0.70540 0.89528 0.87301 0.91025 0.85471 0.85806 0.86198 0.85914 0.89475 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.69 10.72 55.56 0.60 -19.10 16 2 C 0.07 1.70 5.50 -17.29 -0.10 1.60 16 3 Si 0.94 17.53 29.56 -169.99 -5.03 12.51 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 7 C -0.43 -11.04 9.47 -38.01 -0.36 -11.40 16 8 H 0.10 2.61 7.85 -52.49 -0.41 2.20 16 9 C 0.41 11.29 7.67 -155.88 -1.20 10.10 16 10 N -0.63 -16.81 11.24 -10.11 -0.11 -16.92 16 11 C 0.22 5.16 6.62 -157.15 -1.04 4.12 16 12 C -0.02 -0.31 2.89 -91.52 -0.26 -0.58 16 13 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 14 C 0.08 1.31 6.31 37.37 0.24 1.54 16 15 O -0.32 -5.26 10.27 -19.25 -0.20 -5.46 16 16 C 0.13 2.09 6.47 -39.20 -0.25 1.84 16 17 C -0.15 -2.01 9.94 -39.34 -0.39 -2.40 16 18 C -0.09 -1.07 10.04 -39.66 -0.40 -1.47 16 19 C -0.16 -1.81 10.04 -39.61 -0.40 -2.21 16 20 C -0.09 -1.12 9.67 -39.53 -0.38 -1.50 16 21 C -0.15 -2.29 5.75 -104.44 -0.60 -2.89 16 22 C -0.07 -1.18 5.18 -27.82 -0.14 -1.32 16 23 N -0.40 -10.10 12.66 32.36 0.41 -9.69 16 24 N -0.51 -13.40 7.16 31.10 0.22 -13.17 16 25 H 0.44 11.37 6.38 -182.32 -1.16 10.21 16 26 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 27 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 33 H 0.09 1.56 7.97 -51.93 -0.41 1.15 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 293.77 15.07 4.43 4.43 Total: -1.00 -28.53 293.77 -9.47 -38.01 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -4.51 Total: 13.96 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -5.29 Total: -4.56 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 1.11 Total: -58.88 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.53 -9.47 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088043739.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.972 kcal (2) G-P(sol) polarization free energy of solvation -28.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds