Wall clock time and date at job start Mon Mar 30 2020 04:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48508 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47284 * 300.00516 * 3 2 1 6 6 H 1.48502 * 109.47194 * 60.00221 * 3 2 1 7 7 C 1.40275 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.40372 * 119.99276 * 359.97438 * 7 2 1 10 10 N 1.33067 * 126.30788 * 180.32423 * 9 7 2 11 11 C 1.32239 * 109.79540 * 180.13382 * 10 9 7 12 12 C 1.50700 * 125.15391 * 179.82177 * 11 10 9 13 13 H 1.08993 * 109.69668 * 359.16838 * 12 11 10 14 14 C 1.53407 * 109.69550 * 119.72718 * 12 11 10 15 15 O 1.42827 * 108.38175 * 184.40811 * 14 12 11 16 16 C 1.35845 * 117.85646 * 310.81570 * 15 14 12 17 17 C 1.39147 * 118.49487 * 196.98448 * 16 15 14 18 18 C 1.37972 * 120.21340 * 180.43459 * 17 16 15 19 19 C 1.38290 * 119.95654 * 359.97438 * 18 17 16 20 20 C 1.38098 * 119.98539 * 359.91422 * 19 18 17 21 21 C 1.38369 * 121.80757 * 17.23704 * 16 15 14 22 22 C 1.50764 * 121.40292 * 359.48223 * 21 16 15 23 23 N 1.31399 * 109.68292 * 359.56100 * 11 10 9 24 24 N 1.37017 * 126.32144 * 359.97438 * 9 7 2 25 25 H 0.97005 * 127.01654 * 0.06229 * 24 9 7 26 26 H 0.97003 * 119.99906 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.68298 * 304.12945 * 14 12 11 28 28 H 1.08997 * 109.68683 * 64.67813 * 14 12 11 29 29 H 1.08000 * 119.89477 * 0.42543 * 17 16 15 30 30 H 1.07997 * 120.02132 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.00298 * 179.89856 * 19 18 17 32 32 H 1.08005 * 119.84698 * 180.02562 * 20 19 18 33 33 H 1.08997 * 109.43559 * 257.77635 * 22 21 16 34 34 H 1.09002 * 109.40622 * 137.88718 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7005 1.3463 -0.0006 5 1 1.8816 2.3965 -1.2124 6 1 1.8817 2.3964 1.2125 7 6 2.0078 -1.2148 -0.0005 8 1 3.0877 -1.2148 -0.0010 9 6 1.3058 -2.4304 -0.0005 10 7 1.8404 -3.6490 0.0050 11 6 0.8809 -4.5589 0.0002 12 6 1.0991 -6.0500 0.0003 13 1 2.1676 -6.2649 -0.0099 14 6 0.4597 -6.6661 1.2513 15 8 0.7708 -8.0598 1.2763 16 6 0.5552 -8.7787 0.1440 17 6 0.5037 -10.1660 0.2382 18 6 0.2955 -10.9313 -0.8908 19 6 0.1369 -10.3190 -2.1206 20 6 0.1851 -8.9422 -2.2174 21 6 0.3927 -8.1687 -1.0873 22 6 0.4357 -6.6687 -1.2327 23 7 -0.2916 -3.9658 0.0009 24 7 -0.0561 -2.5811 0.0004 25 1 -0.7217 -1.8755 0.0004 26 1 -0.4850 0.8401 0.0004 27 1 0.8603 -6.1845 2.1434 28 1 -0.6213 -6.5317 1.2152 29 1 0.6272 -10.6454 1.1981 30 1 0.2565 -12.0079 -0.8142 31 1 -0.0245 -10.9173 -3.0050 32 1 0.0605 -8.4663 -3.1789 33 1 -0.5797 -6.2845 -1.3295 34 1 1.0087 -6.4073 -2.1223 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088043739.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:24 Heat of formation + Delta-G solvation = 25.514694 kcal Electronic energy + Delta-G solvation = -19675.673446 eV Core-core repulsion = 16573.388691 eV Total energy + Delta-G solvation = -3102.284755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13264 -41.39687 -38.44777 -36.35465 -35.39696 -32.58588 -32.12063 -31.23540 -30.56661 -27.95586 -26.77665 -25.24251 -23.49559 -22.81526 -21.39661 -20.25597 -19.66846 -18.74527 -17.52109 -17.40342 -17.11326 -16.58915 -16.00438 -15.64192 -15.28689 -15.04161 -14.98457 -14.72363 -14.21288 -14.13757 -13.81478 -13.47197 -13.25372 -13.03718 -12.62660 -12.46323 -12.18764 -12.10358 -11.86790 -11.76292 -11.57096 -11.39492 -10.37032 -10.32603 -10.03523 -9.71742 -9.11448 -9.03474 -6.94958 0.38681 0.49382 1.10664 1.40933 1.59624 1.60036 2.14763 2.18128 2.28489 2.67476 2.83496 3.19521 3.43676 3.60484 3.75222 3.87789 4.01167 4.13452 4.29910 4.41512 4.43769 4.52922 4.61018 4.70701 4.78000 4.93797 5.04035 5.05101 5.14274 5.38867 5.53889 5.57219 5.62043 5.89279 5.98681 6.14804 6.41836 6.45803 6.53950 7.27879 7.96347 8.11522 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.051441 B = 0.003678 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.179038 B = 7610.112176 C = 7752.357690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.038 3.962 3 Si 1.024 2.976 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.456 4.456 8 H 0.103 0.897 9 C 0.384 3.616 10 N -0.657 5.657 11 C 0.220 3.780 12 C -0.014 4.014 13 H 0.092 0.908 14 C 0.087 3.913 15 O -0.321 6.321 16 C 0.101 3.899 17 C -0.157 4.157 18 C -0.085 4.085 19 C -0.149 4.149 20 C -0.093 4.093 21 C -0.167 4.167 22 C -0.058 4.058 23 N -0.416 5.416 24 N -0.519 5.519 25 H 0.438 0.562 26 H 0.308 0.692 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -12.200 -2.371 12.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.178 4.178 3 Si 0.842 3.158 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.497 4.497 8 H 0.121 0.879 9 C 0.132 3.868 10 N -0.397 5.397 11 C -0.064 4.064 12 C -0.036 4.036 13 H 0.110 0.890 14 C 0.011 3.989 15 O -0.235 6.235 16 C 0.057 3.943 17 C -0.175 4.175 18 C -0.103 4.103 19 C -0.167 4.167 20 C -0.111 4.111 21 C -0.168 4.168 22 C -0.096 4.096 23 N -0.252 5.252 24 N -0.245 5.245 25 H 0.292 0.708 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.180 0.820 31 H 0.172 0.828 32 H 0.154 0.846 33 H 0.091 0.909 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.225 -12.630 -2.176 12.874 hybrid contribution -0.265 1.864 -0.047 1.883 sum -1.489 -10.766 -2.223 11.093 Atomic orbital electron populations 1.68731 1.09342 1.32616 1.37213 1.27112 0.95765 1.05502 0.89374 0.84513 0.78812 0.73240 0.79259 1.17836 1.18414 1.18411 1.19085 0.95844 0.87151 1.47649 0.87871 1.21295 0.81781 0.93601 0.90083 1.70735 1.33108 0.98143 1.37666 1.23598 0.87457 0.96513 0.98849 1.19893 1.01522 0.84970 0.97195 0.88971 1.22772 0.99894 0.78022 0.98184 1.85968 1.81998 1.21671 1.33875 1.19153 0.97999 0.92144 0.85027 1.20886 1.05574 0.89750 1.01324 1.21328 0.96716 1.01149 0.91117 1.21388 1.02288 0.93902 0.99114 1.21160 0.97984 0.94610 0.97348 1.19905 1.07846 0.95215 0.93850 1.20355 1.01167 0.90889 0.97178 1.77492 1.22891 0.89208 1.35572 1.48666 1.07802 1.04488 1.63569 0.70751 0.88031 0.87479 0.91502 0.84010 0.82050 0.82848 0.84616 0.90923 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -39.91 10.72 21.88 0.23 -39.67 16 2 C 0.04 1.78 5.50 85.37 0.47 2.25 16 3 Si 1.02 34.83 29.56 68.60 2.03 36.85 16 4 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 5 H -0.26 -8.36 7.11 99.48 0.71 -7.66 16 6 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 7 C -0.46 -24.17 9.47 23.29 0.22 -23.94 16 8 H 0.10 5.30 7.85 -2.91 -0.02 5.28 16 9 C 0.38 21.87 7.67 133.83 1.03 22.89 16 10 N -0.66 -36.77 11.24 -185.90 -2.09 -38.86 16 11 C 0.22 11.00 6.62 138.73 0.92 11.92 16 12 C -0.01 -0.58 2.89 -11.38 -0.03 -0.61 16 13 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 14 C 0.09 3.15 6.31 72.12 0.45 3.60 16 15 O -0.32 -10.82 10.27 -91.81 -0.94 -11.76 16 16 C 0.10 3.12 6.47 22.52 0.15 3.27 16 17 C -0.16 -3.79 9.94 22.43 0.22 -3.57 16 18 C -0.09 -1.60 10.04 22.22 0.22 -1.38 16 19 C -0.15 -2.88 10.04 22.25 0.22 -2.65 16 20 C -0.09 -2.28 9.67 22.30 0.22 -2.07 16 21 C -0.17 -5.12 5.75 -19.75 -0.11 -5.23 16 22 C -0.06 -2.04 5.18 29.89 0.15 -1.89 16 23 N -0.42 -21.79 12.66 -51.54 -0.65 -22.44 16 24 N -0.52 -28.55 7.16 -55.51 -0.40 -28.94 16 25 H 0.44 23.43 6.38 -213.08 -1.36 22.07 16 26 H 0.31 12.67 8.29 -92.71 -0.77 11.90 16 27 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.07 2.73 7.97 -2.39 -0.02 2.71 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -63.41 293.77 2.09 -61.32 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.22 Total: 40.93 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 4.13 Total: 2.58 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -2.91 Total: -129.92 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.94 Total: -11.76 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.85 kcal Total: -63.41 2.09 -61.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088043739.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.832 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds