Wall clock time and date at job start Mon Mar 30 2020 04:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46768 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47564 * 119.99582 * 3 2 1 6 6 H 1.48497 * 109.47161 * 240.00013 * 3 2 1 7 7 C 1.40269 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00233 * 349.69863 * 7 2 1 9 9 C 1.40372 * 119.99646 * 169.68862 * 7 2 1 10 10 N 1.33071 * 126.31239 * 196.12852 * 9 7 2 11 11 C 1.32235 * 109.79765 * 179.82772 * 10 9 7 12 12 C 1.50698 * 125.16195 * 180.18121 * 11 10 9 13 13 H 1.09009 * 109.43017 * 0.42866 * 12 11 10 14 14 C 1.53060 * 109.43861 * 240.55696 * 12 11 10 15 15 C 1.53405 * 108.30883 * 191.75649 * 14 12 11 16 16 O 1.42831 * 108.37636 * 64.70315 * 15 14 12 17 17 C 1.35840 * 117.84617 * 310.77468 * 16 15 14 18 18 C 1.39148 * 118.49325 * 197.02651 * 17 16 15 19 19 C 1.37966 * 120.21385 * 180.42491 * 18 17 16 20 20 C 1.38287 * 119.95893 * 0.02562 * 19 18 17 21 21 C 1.38110 * 119.98430 * 359.91481 * 20 19 18 22 22 C 1.38366 * 121.80878 * 17.30667 * 17 16 15 23 23 N 1.31397 * 109.68374 * 0.45310 * 11 10 9 24 24 N 1.37022 * 126.31955 * 16.45038 * 9 7 2 25 25 H 0.97004 * 127.01307 * 0.02562 * 24 9 7 26 26 H 0.97002 * 120.00002 * 174.67326 * 1 2 3 27 27 H 1.09004 * 109.69581 * 311.45815 * 14 12 11 28 28 H 1.09001 * 109.69712 * 72.05359 * 14 12 11 29 29 H 1.08997 * 109.68142 * 304.98225 * 15 14 12 30 30 H 1.09000 * 109.68696 * 184.42768 * 15 14 12 31 31 H 1.07996 * 119.89497 * 0.41271 * 18 17 16 32 32 H 1.08003 * 120.02146 * 179.97438 * 19 18 17 33 33 H 1.08000 * 120.00940 * 179.97438 * 20 19 18 34 34 H 1.07995 * 119.83851 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2753 2.7464 -0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0941 1.6964 -1.2125 7 6 2.0077 -1.2148 0.0005 8 1 1.4808 -2.1424 0.1682 9 6 3.3944 -1.2246 -0.2171 10 7 4.1340 -2.2827 -0.5396 11 6 5.3995 -1.9219 -0.6695 12 6 6.5328 -2.8466 -1.0324 13 1 6.1455 -3.8551 -1.1780 14 6 7.5643 -2.8563 0.0984 15 6 8.8301 -3.5581 -0.4100 16 8 9.3876 -2.7726 -1.4647 17 6 8.5566 -2.3622 -2.4577 18 6 9.1171 -1.9195 -3.6519 19 6 8.3064 -1.4865 -4.6808 20 6 6.9322 -1.4913 -4.5261 21 6 6.3724 -1.9311 -3.3427 22 6 7.1811 -2.3693 -2.3072 23 7 5.5200 -0.6358 -0.4285 24 7 4.2372 -0.1476 -0.1305 25 1 3.9969 0.7655 0.0917 26 1 -0.4850 -0.8364 -0.0780 27 1 7.8026 -1.8326 0.3871 28 1 7.1639 -3.3968 0.9561 29 1 8.5748 -4.5489 -0.7857 30 1 9.5516 -3.6476 0.4020 31 1 10.1901 -1.9147 -3.7736 32 1 8.7448 -1.1431 -5.6063 33 1 6.2969 -1.1520 -5.3309 34 1 5.2989 -1.9343 -3.2246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088043744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:51 Heat of formation + Delta-G solvation = 61.630953 kcal Electronic energy + Delta-G solvation = -20301.608816 eV Core-core repulsion = 17200.890179 eV Total energy + Delta-G solvation = -3100.718636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79199 -39.94194 -37.26701 -34.90853 -33.78547 -30.97643 -30.43148 -30.09968 -29.85124 -26.18656 -25.33096 -23.55734 -22.46444 -21.16493 -19.77970 -18.86719 -18.49271 -17.52089 -16.90903 -16.35245 -15.86491 -14.82695 -14.39907 -14.08712 -13.99860 -13.58398 -13.46403 -13.35452 -13.05990 -12.99745 -12.62996 -12.20600 -11.55140 -11.46271 -11.25528 -10.86566 -10.73928 -10.61274 -10.30923 -10.22063 -10.03740 -9.57065 -8.76445 -8.54166 -8.44281 -8.29928 -7.93147 -7.59831 -5.02896 1.55403 1.67047 2.66181 2.81533 2.95887 3.11060 3.43541 3.63942 3.93914 3.95787 4.07509 4.81278 4.85152 4.90901 5.00391 5.10559 5.26629 5.29784 5.45269 5.51917 5.62104 5.71215 5.77536 5.85769 6.08666 6.19813 6.30702 6.48862 6.59248 6.72543 6.83342 6.99634 7.08046 7.30064 7.59128 7.64131 7.94876 8.08972 8.28709 8.69309 9.68044 9.77445 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.005615 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.194757 B = 4985.250677 C = 5453.401659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.050 3.950 3 Si 1.035 2.965 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.103 0.897 9 C 0.405 3.595 10 N -0.620 5.620 11 C 0.237 3.763 12 C 0.054 3.946 13 H 0.100 0.900 14 C -0.150 4.150 15 C 0.064 3.936 16 O -0.319 6.319 17 C 0.134 3.866 18 C -0.156 4.156 19 C -0.092 4.092 20 C -0.155 4.155 21 C -0.063 4.063 22 C -0.135 4.135 23 N -0.384 5.384 24 N -0.563 5.563 25 H 0.405 0.595 26 H 0.294 0.706 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.568 -2.908 -4.008 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.173 4.173 3 Si 0.862 3.138 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.532 4.532 8 H 0.121 0.879 9 C 0.156 3.844 10 N -0.358 5.358 11 C -0.047 4.047 12 C 0.034 3.966 13 H 0.118 0.882 14 C -0.188 4.188 15 C -0.011 4.011 16 O -0.233 6.233 17 C 0.089 3.911 18 C -0.175 4.175 19 C -0.110 4.110 20 C -0.174 4.174 21 C -0.081 4.081 22 C -0.137 4.137 23 N -0.218 5.218 24 N -0.292 5.292 25 H 0.257 0.743 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.051 -1.248 -3.978 13.701 hybrid contribution -0.697 -1.077 0.286 1.315 sum 12.353 -2.325 -3.692 13.101 Atomic orbital electron populations 1.70416 1.07307 1.33345 1.31502 1.26904 0.96253 1.03231 0.90959 0.84191 0.75518 0.75482 0.78590 1.18834 1.19318 1.18699 1.19672 0.88478 0.97669 1.47384 0.87939 1.21096 0.92815 0.81130 0.89394 1.70825 1.01605 1.28828 1.34533 1.23020 0.92738 0.90617 0.98322 1.18138 0.90268 0.97154 0.91089 0.88224 1.22269 0.94882 1.03262 0.98421 1.22977 0.96043 0.93285 0.88759 1.85938 1.36857 1.67654 1.32866 1.18623 0.88208 0.96203 0.88068 1.20463 1.00133 1.05498 0.91403 1.20836 0.93440 0.98698 0.98029 1.20992 0.95021 1.03289 0.98073 1.21012 1.00091 0.95020 0.91994 1.19663 0.92081 1.05273 0.96664 1.77703 1.00311 1.11490 1.32251 1.48984 1.05442 1.10588 1.64151 0.74303 0.89401 0.89562 0.89610 0.91733 0.87508 0.85615 0.85830 0.86210 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.23 13.64 55.56 0.76 -19.47 16 2 C 0.05 1.26 5.52 -17.30 -0.10 1.16 16 3 Si 1.03 21.85 24.93 -169.99 -4.24 17.62 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.31 6.76 56.52 0.38 -4.92 16 6 H -0.26 -5.52 6.87 56.52 0.39 -5.13 16 7 C -0.49 -13.02 9.88 -38.02 -0.38 -13.40 16 8 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.40 10.79 7.39 -155.87 -1.15 9.63 16 10 N -0.62 -16.14 11.24 -10.11 -0.11 -16.25 16 11 C 0.24 5.52 5.31 -157.16 -0.83 4.68 16 12 C 0.05 1.01 2.84 -92.86 -0.26 0.74 16 13 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 14 C -0.15 -2.32 5.49 -26.49 -0.15 -2.46 16 15 C 0.06 0.80 7.03 37.37 0.26 1.06 16 16 O -0.32 -4.81 10.27 -19.24 -0.20 -5.01 16 17 C 0.13 2.18 6.47 -39.20 -0.25 1.93 16 18 C -0.16 -2.24 9.94 -39.34 -0.39 -2.63 16 19 C -0.09 -1.24 10.04 -39.66 -0.40 -1.64 16 20 C -0.16 -2.38 10.04 -39.61 -0.40 -2.78 16 21 C -0.06 -1.15 9.10 -39.53 -0.36 -1.51 16 22 C -0.14 -2.42 5.42 -104.44 -0.57 -2.99 16 23 N -0.38 -9.48 12.69 32.36 0.41 -9.07 16 24 N -0.56 -14.25 6.38 31.11 0.20 -14.06 16 25 H 0.41 9.51 3.09 -182.32 -0.56 8.94 16 26 H 0.29 7.20 8.73 -40.82 -0.36 6.85 16 27 H 0.09 1.50 8.01 -51.93 -0.42 1.08 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.51 7.36 -52.49 -0.39 2.12 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -29.75 286.34 -7.77 -37.52 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -3.93 Total: 12.59 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -4.97 Total: -8.19 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 1.25 Total: -58.85 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.20 Total: -5.01 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.24 Total: 17.62 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.75 -7.77 -37.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088043744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.154 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds