Wall clock time and date at job start Mon Mar 30 2020 04:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46768 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47564 * 119.99582 * 3 2 1 6 6 H 1.48497 * 109.47161 * 240.00013 * 3 2 1 7 7 C 1.40269 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00233 * 349.69863 * 7 2 1 9 9 C 1.40372 * 119.99646 * 169.68862 * 7 2 1 10 10 N 1.33071 * 126.31239 * 196.12852 * 9 7 2 11 11 C 1.32235 * 109.79765 * 179.82772 * 10 9 7 12 12 C 1.50698 * 125.16195 * 180.18121 * 11 10 9 13 13 H 1.09009 * 109.43017 * 0.42866 * 12 11 10 14 14 C 1.53060 * 109.43861 * 240.55696 * 12 11 10 15 15 C 1.53405 * 108.30883 * 191.75649 * 14 12 11 16 16 O 1.42831 * 108.37636 * 64.70315 * 15 14 12 17 17 C 1.35840 * 117.84617 * 310.77468 * 16 15 14 18 18 C 1.39148 * 118.49325 * 197.02651 * 17 16 15 19 19 C 1.37966 * 120.21385 * 180.42491 * 18 17 16 20 20 C 1.38287 * 119.95893 * 0.02562 * 19 18 17 21 21 C 1.38110 * 119.98430 * 359.91481 * 20 19 18 22 22 C 1.38366 * 121.80878 * 17.30667 * 17 16 15 23 23 N 1.31397 * 109.68374 * 0.45310 * 11 10 9 24 24 N 1.37022 * 126.31955 * 16.45038 * 9 7 2 25 25 H 0.97004 * 127.01307 * 0.02562 * 24 9 7 26 26 H 0.97002 * 120.00002 * 174.67326 * 1 2 3 27 27 H 1.09004 * 109.69581 * 311.45815 * 14 12 11 28 28 H 1.09001 * 109.69712 * 72.05359 * 14 12 11 29 29 H 1.08997 * 109.68142 * 304.98225 * 15 14 12 30 30 H 1.09000 * 109.68696 * 184.42768 * 15 14 12 31 31 H 1.07996 * 119.89497 * 0.41271 * 18 17 16 32 32 H 1.08003 * 120.02146 * 179.97438 * 19 18 17 33 33 H 1.08000 * 120.00940 * 179.97438 * 20 19 18 34 34 H 1.07995 * 119.83851 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 1.2753 2.7464 -0.0006 5 1 3.0941 1.6965 1.2125 6 1 3.0941 1.6964 -1.2125 7 6 2.0077 -1.2148 0.0005 8 1 1.4808 -2.1424 0.1682 9 6 3.3944 -1.2246 -0.2171 10 7 4.1340 -2.2827 -0.5396 11 6 5.3995 -1.9219 -0.6695 12 6 6.5328 -2.8466 -1.0324 13 1 6.1455 -3.8551 -1.1780 14 6 7.5643 -2.8563 0.0984 15 6 8.8301 -3.5581 -0.4100 16 8 9.3876 -2.7726 -1.4647 17 6 8.5566 -2.3622 -2.4577 18 6 9.1171 -1.9195 -3.6519 19 6 8.3064 -1.4865 -4.6808 20 6 6.9322 -1.4913 -4.5261 21 6 6.3724 -1.9311 -3.3427 22 6 7.1811 -2.3693 -2.3072 23 7 5.5200 -0.6358 -0.4285 24 7 4.2372 -0.1476 -0.1305 25 1 3.9969 0.7655 0.0917 26 1 -0.4850 -0.8364 -0.0780 27 1 7.8026 -1.8326 0.3871 28 1 7.1639 -3.3968 0.9561 29 1 8.5748 -4.5489 -0.7857 30 1 9.5516 -3.6476 0.4020 31 1 10.1901 -1.9147 -3.7736 32 1 8.7448 -1.1431 -5.6063 33 1 6.2969 -1.1520 -5.3309 34 1 5.2989 -1.9343 -3.2246 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088043744.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:50 Heat of formation + Delta-G solvation = 42.538681 kcal Electronic energy + Delta-G solvation = -20302.436719 eV Core-core repulsion = 17200.890179 eV Total energy + Delta-G solvation = -3101.546539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.44076 -41.42694 -38.41004 -36.49492 -35.57002 -32.82896 -32.03550 -31.53311 -31.14011 -27.88832 -26.97365 -24.74771 -23.79956 -22.85684 -21.25128 -20.72121 -20.27847 -18.80712 -18.69760 -17.55330 -17.05338 -16.17337 -16.00024 -15.70972 -15.58991 -15.04973 -14.98570 -14.93152 -14.72174 -14.23700 -14.03878 -13.46700 -13.18379 -12.75662 -12.69140 -12.43754 -12.17115 -12.04387 -11.86470 -11.74749 -11.50013 -11.45467 -10.64793 -10.44057 -10.32610 -9.76238 -9.61822 -9.12234 -7.09887 0.34533 0.46319 0.82790 1.07963 1.26673 1.33300 1.87504 2.08687 2.16302 2.36463 2.76382 2.93128 3.40248 3.58850 3.75258 3.79636 4.11452 4.16277 4.20640 4.28376 4.44782 4.52272 4.57045 4.66989 4.71044 4.94192 5.03219 5.09968 5.11256 5.25506 5.33227 5.50075 5.59707 5.66857 5.84983 5.95170 6.12418 6.28301 6.46808 6.69619 7.71141 7.76291 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.005615 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.194757 B = 4985.250677 C = 5453.401659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.025 3.975 3 Si 1.063 2.937 4 H -0.238 1.238 5 H -0.247 1.247 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.391 3.609 10 N -0.646 5.646 11 C 0.244 3.756 12 C 0.050 3.950 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.068 3.932 16 O -0.322 6.322 17 C 0.127 3.873 18 C -0.154 4.154 19 C -0.079 4.079 20 C -0.160 4.160 21 C -0.092 4.092 22 C -0.156 4.156 23 N -0.397 5.397 24 N -0.565 5.565 25 H 0.412 0.588 26 H 0.290 0.710 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.136 0.864 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.313 -2.283 -4.723 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.196 4.196 3 Si 0.885 3.115 4 H -0.162 1.162 5 H -0.173 1.173 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.385 5.385 11 C -0.040 4.040 12 C 0.029 3.971 13 H 0.118 0.882 14 C -0.183 4.183 15 C -0.006 4.006 16 O -0.236 6.236 17 C 0.081 3.919 18 C -0.172 4.172 19 C -0.097 4.097 20 C -0.178 4.178 21 C -0.110 4.110 22 C -0.158 4.158 23 N -0.230 5.230 24 N -0.295 5.295 25 H 0.265 0.735 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.154 0.846 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.783 -0.634 -4.680 16.475 hybrid contribution -1.556 -1.356 0.456 2.114 sum 14.227 -1.990 -4.223 14.974 Atomic orbital electron populations 1.70474 1.07567 1.33230 1.31778 1.27985 0.96368 1.05398 0.89816 0.83829 0.75399 0.73112 0.79166 1.16213 1.17348 1.18988 1.19675 0.88849 0.97734 1.49033 0.90223 1.21167 0.93011 0.81979 0.89764 1.70829 1.03029 1.29323 1.35289 1.23834 0.92976 0.90831 0.96315 1.18354 0.89715 0.95983 0.93045 0.88187 1.22238 0.95639 1.02747 0.97676 1.23217 0.95235 0.93102 0.89093 1.85936 1.36709 1.67966 1.33014 1.18818 0.87479 0.96376 0.89179 1.20910 1.01770 1.03971 0.90563 1.21277 0.92322 0.96774 0.99292 1.21241 0.96507 1.02721 0.97332 1.20902 0.98476 0.97660 0.93979 1.19620 0.93121 1.06903 0.96116 1.77665 1.00058 1.12236 1.32999 1.49047 1.05492 1.10754 1.64211 0.73503 0.89801 0.91598 0.88605 0.89974 0.83878 0.82709 0.81741 0.84598 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.11 13.64 21.88 0.30 -40.81 16 2 C 0.02 1.27 5.52 85.36 0.47 1.74 16 3 Si 1.06 43.41 24.93 68.60 1.71 45.12 16 4 H -0.24 -8.80 7.11 99.48 0.71 -8.10 16 5 H -0.25 -9.34 6.76 99.48 0.67 -8.67 16 6 H -0.26 -10.88 6.87 99.48 0.68 -10.20 16 7 C -0.51 -28.16 9.88 23.28 0.23 -27.93 16 8 H 0.08 4.62 8.06 -2.91 -0.02 4.60 16 9 C 0.39 21.45 7.39 133.83 0.99 22.44 16 10 N -0.65 -34.86 11.24 -185.90 -2.09 -36.95 16 11 C 0.24 11.64 5.31 138.74 0.74 12.37 16 12 C 0.05 1.86 2.84 -12.24 -0.03 1.83 16 13 H 0.10 3.62 8.14 -2.38 -0.02 3.60 16 14 C -0.14 -4.32 5.49 30.75 0.17 -4.15 16 15 C 0.07 1.50 7.03 72.12 0.51 2.00 16 16 O -0.32 -8.80 10.27 -91.75 -0.94 -9.75 16 17 C 0.13 3.87 6.47 22.52 0.15 4.02 16 18 C -0.15 -3.88 9.94 22.42 0.22 -3.66 16 19 C -0.08 -1.86 10.04 22.22 0.22 -1.64 16 20 C -0.16 -4.67 10.04 22.25 0.22 -4.45 16 21 C -0.09 -3.39 9.10 22.30 0.20 -3.19 16 22 C -0.16 -5.55 5.42 -19.75 -0.11 -5.66 16 23 N -0.40 -19.84 12.69 -51.55 -0.65 -20.49 16 24 N -0.56 -28.91 6.38 -55.50 -0.35 -29.26 16 25 H 0.41 19.16 3.09 -213.08 -0.66 18.50 16 26 H 0.29 14.61 8.73 -92.71 -0.81 13.80 16 27 H 0.07 2.24 8.01 -2.39 -0.02 2.22 16 28 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.14 2.14 8.14 -2.39 -0.02 2.13 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 34 H 0.09 3.79 7.36 -2.91 -0.02 3.76 16 Total: -1.00 -66.11 286.34 2.33 -63.78 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.38 Total: 34.64 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 3.98 Total: -6.27 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -2.80 Total: -127.52 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.94 Total: -9.75 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.71 Total: 45.12 kcal Total: -66.11 2.33 -63.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088043744.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.316 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds