Wall clock time and date at job start Mon Mar 30 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48509 * 109.47058 * 240.00351 * 3 2 1 5 5 H 1.48504 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47297 * 120.00062 * 3 2 1 7 7 C 1.37872 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00045 * 174.19906 * 7 2 1 9 9 C 1.50699 * 120.00238 * 354.19685 * 7 2 1 10 10 H 1.09006 * 109.46703 * 33.81241 * 9 7 2 11 11 C 1.50695 * 109.47343 * 153.81180 * 9 7 2 12 12 C 1.38236 * 119.99994 * 59.89285 * 11 9 7 13 13 C 1.38242 * 119.99761 * 179.78784 * 12 11 9 14 14 C 1.38232 * 120.00121 * 0.44064 * 13 12 11 15 15 C 1.38236 * 120.00007 * 359.81588 * 14 13 12 16 16 C 1.38234 * 119.99985 * 359.97384 * 15 14 13 17 17 N 1.46503 * 109.47373 * 273.81282 * 9 7 2 18 18 C 1.34258 * 125.75113 * 325.04755 * 17 9 7 19 19 C 1.38037 * 107.41782 * 179.97438 * 18 17 9 20 20 C 1.47431 * 126.41525 * 179.97438 * 19 18 17 21 21 N 1.34780 * 120.00003 * 180.02562 * 20 19 18 22 22 O 1.21604 * 120.00233 * 0.02562 * 20 19 18 23 23 C 1.41290 * 107.17053 * 0.02562 * 19 18 17 24 24 N 1.30446 * 108.02115 * 359.97438 * 23 19 18 25 25 H 0.96995 * 120.00312 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00405 * 0.02562 * 12 11 9 27 27 H 1.08005 * 119.99784 * 180.27572 * 13 12 11 28 28 H 1.07996 * 119.99966 * 179.83004 * 14 13 12 29 29 H 1.08005 * 119.99934 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.00219 * 179.97438 * 16 15 14 31 31 H 1.08008 * 126.28976 * 0.23813 * 18 17 9 32 32 H 0.97003 * 119.99612 * 359.97438 * 21 20 19 33 33 H 0.96994 * 119.99987 * 180.02562 * 21 20 19 34 34 H 1.07998 * 125.98879 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0951 9 6 1.2569 -2.4958 0.1308 10 1 0.2890 -2.4103 -0.3631 11 6 2.0541 -3.6002 -0.5139 12 6 3.3242 -3.8947 -0.0546 13 6 4.0538 -4.9107 -0.6433 14 6 3.5168 -5.6262 -1.6970 15 6 2.2487 -5.3283 -2.1598 16 6 1.5174 -4.3152 -1.5684 17 7 1.0559 -2.8027 1.5492 18 6 1.9166 -2.5249 2.5415 19 6 1.3508 -2.9749 3.7174 20 6 1.9419 -2.8821 5.0648 21 7 1.2726 -3.3673 6.1292 22 8 3.0335 -2.3678 5.2158 23 6 0.0995 -3.5423 3.3877 24 7 -0.0654 -3.4344 2.0982 25 1 -0.4850 0.8400 -0.0004 26 1 3.7451 -3.3335 0.7665 27 1 5.0444 -5.1437 -0.2815 28 1 4.0878 -6.4181 -2.1587 29 1 1.8293 -5.8871 -2.9834 30 1 0.5269 -4.0821 -1.9301 31 1 2.8738 -2.0350 2.4391 32 1 0.4017 -3.7772 6.0088 33 1 1.6613 -3.3059 7.0157 34 1 -0.5985 -3.9865 4.0818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129427408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:56 Heat of formation + Delta-G solvation = 49.172309 kcal Electronic energy + Delta-G solvation = -20111.206526 eV Core-core repulsion = 17009.947642 eV Total energy + Delta-G solvation = -3101.258884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44277 -38.69398 -38.11555 -34.44149 -33.16571 -32.01001 -30.43706 -29.83008 -29.25940 -26.86262 -24.10019 -22.35464 -22.01563 -21.10764 -19.67486 -19.29506 -17.40973 -16.90002 -16.49014 -15.96260 -15.13089 -14.95725 -14.50627 -14.28848 -14.10228 -13.59746 -13.45853 -13.09121 -12.90909 -12.48343 -12.15465 -12.01884 -11.76809 -11.31601 -11.15480 -10.73824 -10.58395 -10.37866 -10.12353 -9.75127 -9.29203 -9.28698 -9.00839 -8.54853 -8.39488 -8.19447 -7.72232 -6.57882 -4.73878 1.86669 1.92146 2.49480 3.04952 3.10641 3.16169 3.19538 3.54880 4.04210 4.16113 4.19770 4.43473 4.92582 5.37040 5.38204 5.40170 5.51573 5.66240 5.78961 5.87151 6.04216 6.09572 6.33069 6.45841 6.52882 6.56833 6.82277 6.95820 6.99271 7.13363 7.25829 7.31778 7.39879 7.52975 7.65756 7.82406 8.09094 8.42268 8.68331 8.84951 8.99465 10.46768 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.008722 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.144091 B = 3209.428548 C = 4686.069327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.082 3.918 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.075 0.925 9 C 0.286 3.714 10 H 0.097 0.903 11 C -0.058 4.058 12 C -0.106 4.106 13 C -0.126 4.126 14 C -0.138 4.138 15 C -0.125 4.125 16 C -0.111 4.111 17 N -0.301 5.301 18 C 0.156 3.844 19 C -0.343 4.343 20 C 0.604 3.396 21 N -0.861 5.861 22 O -0.569 6.569 23 C 0.053 3.947 24 N -0.310 5.310 25 H 0.275 0.725 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.172 0.828 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -7.577 2.529 8.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.192 3.808 10 H 0.115 0.885 11 C -0.059 4.059 12 C -0.125 4.125 13 C -0.144 4.144 14 C -0.156 4.156 15 C -0.143 4.143 16 C -0.130 4.130 17 N -0.078 5.078 18 C -0.001 4.001 19 C -0.359 4.359 20 C 0.393 3.607 21 N -0.423 5.423 22 O -0.448 6.448 23 C -0.134 4.134 24 N -0.130 5.130 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.189 0.811 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.131 -7.328 1.228 7.516 hybrid contribution 0.561 0.931 1.071 1.525 sum 1.692 -6.398 2.299 7.006 Atomic orbital electron populations 1.69930 1.06461 1.28713 1.43062 1.25221 0.94990 1.00473 0.92233 0.86407 0.79816 0.81149 0.79603 1.19343 1.20672 1.19103 1.21172 0.94360 0.88653 1.52721 0.90656 1.18424 0.98309 0.90247 0.73866 0.88548 1.20416 0.94714 0.95177 0.95606 1.21050 0.94345 0.97049 1.00025 1.21054 0.99583 0.96718 0.97020 1.20962 0.96077 1.00506 0.98037 1.21011 0.94995 0.98235 1.00092 1.21041 0.99855 0.95468 0.96627 1.51154 1.10032 1.37750 1.08820 1.22686 0.96383 0.94028 0.87000 1.19950 1.00440 1.22070 0.93432 1.17462 0.83589 0.75746 0.83914 1.43616 1.23832 1.65198 1.09683 1.90746 1.21442 1.46156 1.86506 1.23620 0.95776 1.00243 0.93746 1.76995 1.09256 1.17427 1.09313 0.91484 0.86358 0.86800 0.86981 0.86757 0.86278 0.81073 0.77515 0.77499 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.44 12.90 55.43 0.72 -21.73 16 2 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.53 -12.97 7.35 -34.44 -0.25 -13.22 16 8 H 0.08 1.80 7.42 -52.48 -0.39 1.41 16 9 C 0.29 6.67 2.95 -70.24 -0.21 6.46 16 10 H 0.10 2.50 7.23 -51.93 -0.38 2.12 16 11 C -0.06 -1.20 4.97 -104.63 -0.52 -1.72 16 12 C -0.11 -2.03 8.67 -39.58 -0.34 -2.37 16 13 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 14 C -0.14 -2.10 10.05 -39.58 -0.40 -2.50 16 15 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 16 C -0.11 -2.07 9.67 -39.58 -0.38 -2.46 16 17 N -0.30 -6.87 3.42 -56.58 -0.19 -7.06 16 18 C 0.16 3.42 9.33 -16.56 -0.15 3.26 16 19 C -0.34 -6.79 6.13 -105.07 -0.64 -7.44 16 20 C 0.60 11.08 8.09 -12.52 -0.10 10.98 16 21 N -0.86 -10.89 8.87 30.43 0.27 -10.62 16 22 O -0.57 -12.46 17.73 5.27 0.09 -12.36 16 23 C 0.05 0.99 11.50 -16.98 -0.20 0.79 16 24 N -0.31 -6.86 12.50 30.86 0.39 -6.48 16 25 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.12 2.26 7.00 -52.49 -0.37 1.89 16 27 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 30 H 0.12 2.12 7.95 -52.49 -0.42 1.70 16 31 H 0.17 3.69 7.62 -52.48 -0.40 3.29 16 32 H 0.40 3.89 7.78 -40.82 -0.32 3.57 16 33 H 0.40 4.21 8.93 -40.82 -0.36 3.84 16 34 H 0.17 2.28 7.50 -52.49 -0.39 1.89 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -30.39 304.44 -6.68 -37.07 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -3.43 Total: 13.06 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -4.09 Total: -11.10 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 1.18 Total: -45.88 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.39 -6.68 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129427408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.242 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds