Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99908 * 2 1 4 4 H 1.48509 * 109.47058 * 240.00351 * 3 2 1 5 5 H 1.48504 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47297 * 120.00062 * 3 2 1 7 7 C 1.37872 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00045 * 174.19906 * 7 2 1 9 9 C 1.50699 * 120.00238 * 354.19685 * 7 2 1 10 10 H 1.09006 * 109.46703 * 33.81241 * 9 7 2 11 11 C 1.50695 * 109.47343 * 153.81180 * 9 7 2 12 12 C 1.38236 * 119.99994 * 59.89285 * 11 9 7 13 13 C 1.38242 * 119.99761 * 179.78784 * 12 11 9 14 14 C 1.38232 * 120.00121 * 0.44064 * 13 12 11 15 15 C 1.38236 * 120.00007 * 359.81588 * 14 13 12 16 16 C 1.38234 * 119.99985 * 359.97384 * 15 14 13 17 17 N 1.46503 * 109.47373 * 273.81282 * 9 7 2 18 18 C 1.34258 * 125.75113 * 325.04755 * 17 9 7 19 19 C 1.38037 * 107.41782 * 179.97438 * 18 17 9 20 20 C 1.47431 * 126.41525 * 179.97438 * 19 18 17 21 21 N 1.34780 * 120.00003 * 180.02562 * 20 19 18 22 22 O 1.21604 * 120.00233 * 0.02562 * 20 19 18 23 23 C 1.41290 * 107.17053 * 0.02562 * 19 18 17 24 24 N 1.30446 * 108.02115 * 359.97438 * 23 19 18 25 25 H 0.96995 * 120.00312 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00405 * 0.02562 * 12 11 9 27 27 H 1.08005 * 119.99784 * 180.27572 * 13 12 11 28 28 H 1.07996 * 119.99966 * 179.83004 * 14 13 12 29 29 H 1.08005 * 119.99934 * 179.97438 * 15 14 13 30 30 H 1.07999 * 120.00219 * 179.97438 * 16 15 14 31 31 H 1.08008 * 126.28976 * 0.23813 * 18 17 9 32 32 H 0.97003 * 119.99612 * 359.97438 * 21 20 19 33 33 H 0.96994 * 119.99987 * 180.02562 * 21 20 19 34 34 H 1.07998 * 125.98879 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1963 -0.0951 9 6 1.2569 -2.4958 0.1308 10 1 0.2890 -2.4103 -0.3631 11 6 2.0541 -3.6002 -0.5139 12 6 3.3242 -3.8947 -0.0546 13 6 4.0538 -4.9107 -0.6433 14 6 3.5168 -5.6262 -1.6970 15 6 2.2487 -5.3283 -2.1598 16 6 1.5174 -4.3152 -1.5684 17 7 1.0559 -2.8027 1.5492 18 6 1.9166 -2.5249 2.5415 19 6 1.3508 -2.9749 3.7174 20 6 1.9419 -2.8821 5.0648 21 7 1.2726 -3.3673 6.1292 22 8 3.0335 -2.3678 5.2158 23 6 0.0995 -3.5423 3.3877 24 7 -0.0654 -3.4344 2.0982 25 1 -0.4850 0.8400 -0.0004 26 1 3.7451 -3.3335 0.7665 27 1 5.0444 -5.1437 -0.2815 28 1 4.0878 -6.4181 -2.1587 29 1 1.8293 -5.8871 -2.9834 30 1 0.5269 -4.0821 -1.9301 31 1 2.8738 -2.0350 2.4391 32 1 0.4017 -3.7772 6.0088 33 1 1.6613 -3.3059 7.0157 34 1 -0.5985 -3.9865 4.0818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129427408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = 28.119794 kcal Electronic energy + Delta-G solvation = -20112.119431 eV Core-core repulsion = 17009.947642 eV Total energy + Delta-G solvation = -3102.171789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.06732 -40.11038 -39.58687 -36.15106 -34.53850 -33.73687 -31.81082 -31.33112 -30.85099 -28.59910 -25.81454 -23.86253 -23.38496 -22.58281 -21.31136 -20.78672 -18.99326 -18.54051 -17.85983 -17.44304 -16.76321 -16.45278 -16.08386 -15.80918 -15.58248 -15.09542 -14.97140 -14.66752 -14.25936 -14.12039 -13.74488 -13.52340 -13.40070 -12.92595 -12.91499 -12.33364 -12.09625 -11.91966 -11.74165 -11.53058 -10.93375 -10.84112 -10.55744 -10.23380 -9.75584 -9.61156 -9.34172 -8.47309 -6.68497 0.47929 0.56214 0.88842 1.32877 1.38015 1.44828 1.51156 1.91817 2.24439 2.67164 2.88373 3.02655 3.05953 3.97805 4.01281 4.07042 4.16581 4.24441 4.33600 4.40683 4.59598 4.72592 4.77970 4.93613 5.06550 5.15511 5.24595 5.43191 5.62585 5.63365 5.64557 5.77531 5.97951 6.07515 6.19715 6.36252 6.51048 6.62983 7.04506 7.08769 7.53729 8.57722 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.008722 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.144091 B = 3209.428548 C = 4686.069327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.039 3.961 3 Si 0.960 3.040 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.295 3.705 10 H 0.058 0.942 11 C -0.086 4.086 12 C -0.124 4.124 13 C -0.125 4.125 14 C -0.127 4.127 15 C -0.119 4.119 16 C -0.131 4.131 17 N -0.312 5.312 18 C 0.134 3.866 19 C -0.343 4.343 20 C 0.604 3.396 21 N -0.828 5.828 22 O -0.609 6.609 23 C 0.071 3.929 24 N -0.347 5.347 25 H 0.274 0.726 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.113 0.887 31 H 0.163 0.837 32 H 0.415 0.585 33 H 0.411 0.589 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 -9.465 3.132 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.168 4.168 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.092 0.908 9 C 0.200 3.800 10 H 0.076 0.924 11 C -0.087 4.087 12 C -0.142 4.142 13 C -0.142 4.142 14 C -0.145 4.145 15 C -0.137 4.137 16 C -0.150 4.150 17 N -0.088 5.088 18 C -0.023 4.023 19 C -0.359 4.359 20 C 0.392 3.608 21 N -0.392 5.392 22 O -0.492 6.492 23 C -0.115 4.115 24 N -0.167 5.167 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.167 0.833 30 H 0.131 0.869 31 H 0.180 0.820 32 H 0.246 0.754 33 H 0.243 0.757 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.868 -9.244 1.862 9.613 hybrid contribution 0.316 1.345 0.951 1.677 sum 2.184 -7.900 2.813 8.665 Atomic orbital electron populations 1.70042 1.07724 1.29084 1.45385 1.25935 0.95565 1.03298 0.92010 0.85553 0.78668 0.77798 0.79606 1.18330 1.20419 1.19389 1.21365 0.94320 0.89584 1.52469 0.90850 1.18068 0.96581 0.91310 0.74080 0.92425 1.20318 0.95535 0.95849 0.97044 1.21053 0.94227 0.98462 1.00488 1.21408 1.00476 0.95456 0.96896 1.21453 0.95735 1.00438 0.96826 1.21395 0.95069 0.96941 1.00249 1.21173 1.00295 0.96707 0.96783 1.50704 1.10654 1.38732 1.08716 1.22792 0.96469 0.95077 0.87924 1.20198 1.00715 1.21266 0.93698 1.17313 0.83230 0.75882 0.84372 1.43272 1.23964 1.63021 1.08948 1.90732 1.23265 1.48221 1.87014 1.24394 0.95709 0.98284 0.93150 1.76961 1.09493 1.19006 1.11216 0.91688 0.87606 0.83935 0.82784 0.83335 0.86865 0.81966 0.75362 0.75710 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.24 12.90 21.45 0.28 -48.96 16 2 C 0.04 2.02 5.45 84.65 0.46 2.48 16 3 Si 0.96 41.53 29.54 68.60 2.03 43.55 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -27.73 7.35 25.60 0.19 -27.54 16 8 H 0.07 3.69 7.42 -2.91 -0.02 3.67 16 9 C 0.30 14.59 2.95 43.50 0.13 14.71 16 10 H 0.06 3.23 7.23 -2.38 -0.02 3.21 16 11 C -0.09 -3.69 4.97 -19.87 -0.10 -3.79 16 12 C -0.12 -4.79 8.67 22.27 0.19 -4.60 16 13 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 14 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 15 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 16 C -0.13 -4.94 9.67 22.27 0.22 -4.73 16 17 N -0.31 -14.82 3.42 -332.91 -1.14 -15.96 16 18 C 0.13 6.07 9.33 84.27 0.79 6.86 16 19 C -0.34 -13.40 6.13 -20.15 -0.12 -13.53 16 20 C 0.60 21.32 8.09 86.66 0.70 22.02 16 21 N -0.83 -18.37 8.87 -175.88 -1.56 -19.93 16 22 O -0.61 -26.46 17.73 -4.04 -0.07 -26.54 16 23 C 0.07 2.54 11.50 85.65 0.99 3.52 16 24 N -0.35 -15.54 12.50 -56.28 -0.70 -16.24 16 25 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 26 H 0.11 4.24 7.00 -2.91 -0.02 4.22 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 28 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.11 4.25 7.95 -2.91 -0.02 4.23 16 31 H 0.16 7.45 7.62 -2.91 -0.02 7.43 16 32 H 0.42 6.42 7.78 -92.71 -0.72 5.70 16 33 H 0.41 7.39 8.93 -92.71 -0.83 6.56 16 34 H 0.22 5.13 7.50 -2.91 -0.02 5.10 16 Total: -1.00 -69.91 304.44 2.54 -67.37 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.40 Total: 31.38 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.11 Total: -14.68 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.13 Total: -101.09 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.07 Total: -26.54 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -69.91 2.54 -67.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129427408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.486 kcal (2) G-P(sol) polarization free energy of solvation -69.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds