Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00087 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00234 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99875 * 180.02562 * 11 10 9 13 13 O 1.21592 * 120.00408 * 0.26803 * 12 11 10 14 14 C 1.47516 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.38669 * 120.34023 * 359.97438 * 14 12 11 16 16 C 1.38986 * 120.63530 * 180.02562 * 15 14 12 17 17 C 1.36223 * 121.14033 * 359.97438 * 16 15 14 18 18 C 1.40690 * 120.16647 * 0.02562 * 17 16 15 19 19 N 1.33768 * 120.96832 * 179.97438 * 18 17 16 20 20 C 1.31330 * 119.72588 * 180.02562 * 19 18 17 21 21 C 1.39653 * 120.68559 * 0.02562 * 20 19 18 22 22 N 1.31454 * 120.63959 * 359.95835 * 21 20 19 23 23 C 1.33497 * 119.72217 * 359.79756 * 22 21 20 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00130 * 9 7 2 26 26 H 1.09000 * 109.46978 * 300.00492 * 9 7 2 27 27 H 1.08996 * 109.47407 * 59.99623 * 10 9 7 28 28 H 1.09000 * 109.46986 * 299.99851 * 10 9 7 29 29 H 0.96999 * 120.00082 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.68347 * 359.97438 * 15 14 12 31 31 H 1.07995 * 119.43027 * 179.97438 * 16 15 14 32 32 H 1.07998 * 119.91459 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.65681 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.67933 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4025 -6.0981 0.0051 14 6 1.4490 -7.3755 -0.0008 15 6 0.0624 -7.3837 -0.0007 16 6 -0.6388 -8.5838 -0.0002 17 6 0.0126 -9.7802 -0.0003 18 6 1.4189 -9.8195 -0.0004 19 7 2.0749 -10.9853 0.0000 20 6 3.3882 -10.9936 0.0005 21 6 4.1084 -9.7971 0.0011 22 7 3.4849 -8.6398 0.0003 23 6 2.1503 -8.6070 -0.0050 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8720 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.5428 -4.9308 -0.0011 30 1 -0.4780 -6.4486 -0.0002 31 1 -1.7186 -8.5675 0.0002 32 1 -0.5520 -10.7008 -0.0004 33 1 3.9167 -11.9354 0.0012 34 1 5.1881 -9.8228 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130467425.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = 32.258419 kcal Electronic energy + Delta-G solvation = -19200.404080 eV Core-core repulsion = 16098.411755 eV Total energy + Delta-G solvation = -3101.992325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61103 -39.20307 -37.34748 -35.05434 -34.61892 -32.90398 -31.20943 -31.01818 -29.30560 -25.70445 -25.09895 -24.23866 -23.23740 -21.00737 -20.28253 -18.91033 -18.39961 -17.07140 -16.52044 -16.23704 -15.41213 -15.28764 -15.08340 -14.64371 -14.50077 -14.24911 -14.18639 -13.22066 -13.07446 -12.41984 -12.30579 -12.07002 -12.00844 -11.74875 -11.69423 -11.19020 -11.04906 -10.62769 -10.33630 -9.88029 -9.58659 -9.29780 -9.22909 -8.95012 -8.82169 -8.52130 -8.32856 -6.10367 -4.12864 -0.17690 0.33751 1.53941 2.45193 3.28180 3.35597 3.35840 3.40210 3.51092 3.78959 3.96527 3.96867 4.15272 4.41550 4.48120 4.61135 4.77016 4.87184 5.00589 5.15024 5.27013 5.48919 5.57938 5.70627 5.90583 5.95836 6.33043 6.35319 6.38196 6.73658 6.90033 7.09196 7.50750 7.60020 7.60485 7.88315 7.99509 8.27447 8.66000 8.93337 9.52099 11.01341 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.003468 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.971221 B = 8070.840854 C = 8789.365054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.719 5.719 12 C 0.542 3.458 13 O -0.508 6.508 14 C -0.089 4.089 15 C -0.065 4.065 16 C -0.103 4.103 17 C -0.067 4.067 18 C 0.070 3.930 19 N -0.428 5.428 20 C 0.074 3.926 21 C 0.072 3.928 22 N -0.384 5.384 23 C 0.111 3.889 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.394 0.606 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.175 0.825 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -21.869 -0.011 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.001 3.999 11 N -0.371 5.371 12 C 0.326 3.674 13 O -0.383 6.383 14 C -0.094 4.094 15 C -0.085 4.085 16 C -0.123 4.123 17 C -0.086 4.086 18 C -0.054 4.054 19 N -0.142 5.142 20 C -0.102 4.102 21 C -0.103 4.103 22 N -0.097 5.097 23 C -0.015 4.015 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.229 0.771 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.192 0.808 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.063 -21.576 -0.005 21.576 hybrid contribution -0.059 0.862 -0.004 0.864 sum -0.122 -20.714 -0.010 20.715 Atomic orbital electron populations 1.69961 1.06085 1.26765 1.50529 1.24995 0.94901 0.99426 0.94990 0.86456 0.80200 0.83312 0.77604 1.19558 1.20941 1.20937 1.21092 0.93324 0.90341 1.51152 0.92151 1.19337 0.94228 0.91135 0.97855 1.21744 0.96044 0.81099 1.00969 1.46285 1.10348 1.06380 1.74077 1.17920 0.87625 0.83179 0.78657 1.90827 1.12631 1.86980 1.47889 1.20150 0.93313 0.92884 1.03043 1.21669 0.92699 0.99568 0.94605 1.20962 1.01121 0.91426 0.98781 1.20951 0.91182 0.99278 0.97204 1.19534 0.95412 0.89281 1.01171 1.68690 1.09542 1.27050 1.08957 1.24092 0.90701 1.00214 0.95170 1.24291 1.02496 0.88468 0.95086 1.69059 1.07572 1.27492 1.05547 1.19340 0.90599 0.92837 0.98723 0.92906 0.95896 0.95907 0.92383 0.92398 0.77119 0.83816 0.83872 0.83990 0.80841 0.80782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 11 N -0.72 -12.86 5.51 -61.36 -0.34 -13.19 16 12 C 0.54 10.00 7.77 -12.48 -0.10 9.90 16 13 O -0.51 -11.20 15.19 5.28 0.08 -11.12 16 14 C -0.09 -1.34 5.90 -104.63 -0.62 -1.96 16 15 C -0.06 -0.71 9.52 -39.15 -0.37 -1.08 16 16 C -0.10 -0.90 9.93 -40.03 -0.40 -1.29 16 17 C -0.07 -0.65 9.97 -39.38 -0.39 -1.05 16 18 C 0.07 0.90 6.59 -84.81 -0.56 0.34 16 19 N -0.43 -5.03 10.46 -10.82 -0.11 -5.14 16 20 C 0.07 0.69 11.21 -17.24 -0.19 0.49 16 21 C 0.07 0.79 11.22 -17.19 -0.19 0.60 16 22 N -0.38 -6.06 8.56 -10.59 -0.09 -6.15 16 23 C 0.11 1.68 6.60 -84.53 -0.56 1.12 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.39 5.90 6.50 -40.82 -0.27 5.63 16 30 H 0.14 1.28 6.37 -52.49 -0.33 0.94 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -35.21 301.55 -7.68 -42.89 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -3.52 Total: 0.41 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.96 Total: -3.34 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.19 Total: -49.72 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.21 -7.68 -42.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130467425.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.144 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds