Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00087 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00234 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47037 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99875 * 180.02562 * 11 10 9 13 13 O 1.21592 * 120.00408 * 0.26803 * 12 11 10 14 14 C 1.47516 * 120.00023 * 179.97438 * 12 11 10 15 15 C 1.38669 * 120.34023 * 359.97438 * 14 12 11 16 16 C 1.38986 * 120.63530 * 180.02562 * 15 14 12 17 17 C 1.36223 * 121.14033 * 359.97438 * 16 15 14 18 18 C 1.40690 * 120.16647 * 0.02562 * 17 16 15 19 19 N 1.33768 * 120.96832 * 179.97438 * 18 17 16 20 20 C 1.31330 * 119.72588 * 180.02562 * 19 18 17 21 21 C 1.39653 * 120.68559 * 0.02562 * 20 19 18 22 22 N 1.31454 * 120.63959 * 359.95835 * 21 20 19 23 23 C 1.33497 * 119.72217 * 359.79756 * 22 21 20 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47197 * 60.00130 * 9 7 2 26 26 H 1.09000 * 109.46978 * 300.00492 * 9 7 2 27 27 H 1.08996 * 109.47407 * 59.99623 * 10 9 7 28 28 H 1.09000 * 109.46986 * 299.99851 * 10 9 7 29 29 H 0.96999 * 120.00082 * 359.97438 * 11 10 9 30 30 H 1.08002 * 119.68347 * 359.97438 * 15 14 12 31 31 H 1.07995 * 119.43027 * 179.97438 * 16 15 14 32 32 H 1.07998 * 119.91459 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.65681 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.67933 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4025 -6.0981 0.0051 14 6 1.4490 -7.3755 -0.0008 15 6 0.0624 -7.3837 -0.0007 16 6 -0.6388 -8.5838 -0.0002 17 6 0.0126 -9.7802 -0.0003 18 6 1.4189 -9.8195 -0.0004 19 7 2.0749 -10.9853 0.0000 20 6 3.3882 -10.9936 0.0005 21 6 4.1084 -9.7971 0.0011 22 7 3.4849 -8.6398 0.0003 23 6 2.1503 -8.6070 -0.0050 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 2.8720 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.5428 -4.9308 -0.0011 30 1 -0.4780 -6.4486 -0.0002 31 1 -1.7186 -8.5675 0.0002 32 1 -0.5520 -10.7008 -0.0004 33 1 3.9167 -11.9354 0.0012 34 1 5.1881 -9.8228 0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130467425.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = 6.602589 kcal Electronic energy + Delta-G solvation = -19201.516601 eV Core-core repulsion = 16098.411755 eV Total energy + Delta-G solvation = -3103.104845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.49793 -40.55977 -38.26602 -36.64397 -35.68039 -34.85146 -32.46285 -31.84642 -30.93327 -27.04912 -26.41680 -25.12720 -24.54022 -22.82546 -21.52213 -19.84027 -19.37868 -18.50386 -18.01780 -17.48218 -16.61883 -16.54670 -16.44237 -15.97998 -15.96585 -15.23519 -15.03846 -14.77116 -14.57052 -14.29194 -13.27969 -13.16072 -13.01084 -12.89866 -12.79731 -12.70877 -12.61051 -12.51307 -12.24063 -11.67981 -11.45887 -11.03330 -10.61061 -10.09798 -10.04165 -9.96995 -9.64230 -8.24706 -6.34707 -1.05238 -0.48439 0.58915 1.40682 1.41826 1.54879 1.62471 2.12743 2.14923 2.43094 3.01340 3.04432 3.10126 3.15451 3.26212 3.67237 3.71259 3.94685 4.11949 4.26364 4.34444 4.47158 4.47370 4.63456 4.79096 4.83465 4.96545 5.12535 5.21047 5.25649 5.47818 5.57449 5.60206 5.78033 6.15760 6.25841 6.58404 6.76778 6.78286 7.25182 7.34453 8.87333 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.037881 B = 0.003468 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.971221 B = 8070.840854 C = 8789.365054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.143 3.857 11 N -0.713 5.713 12 C 0.542 3.458 13 O -0.554 6.554 14 C -0.133 4.133 15 C -0.044 4.044 16 C -0.096 4.096 17 C -0.055 4.055 18 C 0.051 3.949 19 N -0.439 5.439 20 C 0.084 3.916 21 C 0.074 3.926 22 N -0.445 5.445 23 C 0.084 3.916 24 H 0.266 0.734 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.409 0.591 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.172 0.828 33 H 0.222 0.778 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -23.504 -0.011 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.020 3.980 11 N -0.366 5.366 12 C 0.329 3.671 13 O -0.433 6.433 14 C -0.138 4.138 15 C -0.064 4.064 16 C -0.115 4.115 17 C -0.074 4.074 18 C -0.072 4.072 19 N -0.153 5.153 20 C -0.091 4.091 21 C -0.101 4.101 22 N -0.159 5.159 23 C -0.040 4.040 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.246 0.754 30 H 0.180 0.820 31 H 0.206 0.794 32 H 0.189 0.811 33 H 0.239 0.761 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.134 -23.222 -0.006 23.250 hybrid contribution 0.264 1.215 -0.005 1.243 sum -0.870 -22.007 -0.010 22.024 Atomic orbital electron populations 1.70051 1.07426 1.27955 1.50982 1.25842 0.95823 1.02981 0.94389 0.85405 0.78912 0.78830 0.77953 1.19161 1.20142 1.20133 1.21484 0.93546 0.91975 1.51564 0.92508 1.19136 0.94160 0.91474 0.96593 1.21233 0.95131 0.81941 0.99737 1.46040 1.10949 1.05263 1.74325 1.18489 0.87355 0.84197 0.77023 1.90780 1.14724 1.87737 1.50039 1.19905 0.94756 0.90977 1.08120 1.22005 0.91147 1.01623 0.91665 1.21397 1.03056 0.89823 0.97244 1.21406 0.90095 1.00974 0.94945 1.19863 0.96727 0.88766 1.01859 1.68790 1.10611 1.26366 1.09540 1.24805 0.90133 1.01379 0.92819 1.24931 1.04020 0.88052 0.93097 1.68989 1.08640 1.30124 1.08140 1.19559 0.90872 0.93739 0.99858 0.92489 0.96991 0.97008 0.93671 0.93676 0.75397 0.82020 0.79419 0.81074 0.76132 0.77918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.91 13.29 21.45 0.28 -53.63 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.14 6.41 5.61 86.38 0.48 6.89 16 11 N -0.71 -26.34 5.51 -466.30 -2.57 -28.91 16 12 C 0.54 20.94 7.77 86.69 0.67 21.61 16 13 O -0.55 -25.95 15.19 -4.00 -0.06 -26.01 16 14 C -0.13 -4.06 5.90 -19.87 -0.12 -4.18 16 15 C -0.04 -0.90 9.52 22.55 0.21 -0.68 16 16 C -0.10 -1.34 9.93 21.98 0.22 -1.12 16 17 C -0.05 -0.92 9.97 22.40 0.22 -0.69 16 18 C 0.05 1.24 6.59 40.28 0.27 1.51 16 19 N -0.44 -9.43 10.46 -188.15 -1.97 -11.40 16 20 C 0.08 1.39 11.21 85.11 0.95 2.34 16 21 C 0.07 1.59 11.22 85.09 0.95 2.54 16 22 N -0.45 -14.53 8.56 -187.41 -1.60 -16.14 16 23 C 0.08 2.60 6.60 40.58 0.27 2.87 16 24 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.41 12.35 6.50 -92.71 -0.60 11.75 16 30 H 0.16 2.56 6.37 -2.91 -0.02 2.54 16 31 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.22 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -79.92 301.55 1.63 -78.29 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.54 Total: 9.20 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 4.99 Total: 2.73 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -5.86 Total: -110.07 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.06 Total: -26.01 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -79.92 1.63 -78.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130467425.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.888 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds