Wall clock time and date at job start Mon Mar 30 2020 04:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47377 * 305.64153 * 3 2 1 5 5 C 1.37095 * 120.00141 * 263.64635 * 4 3 2 6 6 H 1.08005 * 120.00076 * 202.68628 * 5 4 3 7 7 C 1.38949 * 120.00244 * 22.68628 * 5 4 3 8 8 N 1.31411 * 120.00076 * 16.95028 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 196.94970 * 7 5 4 10 10 H 1.48500 * 109.46846 * 60.00234 * 9 7 5 11 11 H 1.48497 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47095 * 299.99823 * 9 7 5 13 13 C 1.34783 * 119.99900 * 83.63775 * 4 3 2 14 14 O 1.21293 * 119.99996 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99746 * 0.02562 * 13 4 3 16 16 H 1.08995 * 110.37608 * 299.07332 * 15 13 4 17 17 C 1.53755 * 110.42244 * 61.45082 * 15 13 4 18 18 N 1.46530 * 105.18211 * 118.88469 * 17 15 13 19 19 C 1.39583 * 110.09091 * 359.97438 * 18 17 15 20 20 C 1.39673 * 129.31814 * 179.97438 * 19 18 17 21 21 C 1.37835 * 120.27589 * 180.25407 * 20 19 18 22 22 C 1.38303 * 120.22901 * 359.44602 * 21 20 19 23 23 C 1.38224 * 119.83366 * 0.56298 * 22 21 20 24 24 C 1.38173 * 120.15393 * 359.72753 * 23 22 21 25 25 H 1.09004 * 109.46829 * 185.64725 * 3 2 1 26 26 H 1.09000 * 109.47337 * 65.64316 * 3 2 1 27 27 H 0.96994 * 120.00561 * 180.02562 * 8 7 5 28 28 H 1.08994 * 110.29591 * 359.95444 * 17 15 13 29 29 H 1.08998 * 110.29779 * 237.81101 * 17 15 13 30 30 H 0.97002 * 124.95247 * 180.02562 * 18 17 15 31 31 H 1.07995 * 119.86294 * 359.97438 * 20 19 18 32 32 H 1.07996 * 119.88178 * 179.74980 * 21 20 19 33 33 H 1.08000 * 120.08330 * 180.26869 * 22 21 20 34 34 H 1.07999 * 119.92631 * 179.69724 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.8039 1.1224 5 6 3.4489 -0.1959 2.2997 6 1 4.1301 -0.6874 2.9786 7 6 2.9295 1.0525 2.6193 8 7 1.8695 1.5046 1.9877 9 14 3.7379 2.0884 3.9471 10 1 5.1447 2.3722 3.5655 11 1 2.9983 3.3675 4.0959 12 1 3.7137 1.3494 5.2348 13 6 3.2001 -2.1420 0.9978 14 8 3.6043 -2.8083 1.9273 15 6 2.8134 -2.8103 -0.2964 16 1 1.7617 -2.6289 -0.5177 17 6 3.6988 -2.3042 -1.4470 18 7 4.3982 -3.4921 -1.9440 19 6 4.0151 -4.6161 -1.2104 20 6 4.4295 -5.9432 -1.3436 21 6 3.9201 -6.9171 -0.5117 22 6 3.0031 -6.5852 0.4690 23 6 2.5880 -5.2740 0.6069 24 6 3.0911 -4.2952 -0.2285 25 1 2.9709 1.0235 0.1011 26 1 2.9716 -0.4230 -0.9362 27 1 1.5071 2.3762 2.2105 28 1 4.4151 -1.5702 -1.0781 29 1 3.0834 -1.8703 -2.2350 30 1 5.0352 -3.4964 -2.6756 31 1 5.1485 -6.2083 -2.1045 32 1 4.2419 -7.9420 -0.6229 33 1 2.6089 -7.3495 1.1224 34 1 1.8683 -5.0141 1.3690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133981159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:59 Heat of formation + Delta-G solvation = 50.939846 kcal Electronic energy + Delta-G solvation = -20498.681892 eV Core-core repulsion = 17397.499655 eV Total energy + Delta-G solvation = -3101.182237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.47395 -38.38318 -35.86325 -35.77792 -34.33782 -32.12780 -31.43510 -29.00840 -28.73390 -27.38191 -24.99782 -22.89735 -22.06157 -21.22488 -19.07776 -17.94833 -17.15665 -16.79356 -16.26483 -15.31141 -15.24560 -15.00592 -14.32702 -14.06404 -13.57257 -13.37095 -13.20138 -12.97852 -12.57579 -12.28402 -12.20525 -12.07889 -11.78764 -11.40014 -11.28064 -11.17022 -11.12452 -10.57546 -10.52908 -10.41666 -10.36706 -9.89300 -9.26580 -8.67904 -8.38248 -8.03287 -7.07943 -6.50479 -4.06405 1.77460 1.94283 3.11089 3.20409 3.22461 3.51140 3.57061 3.74601 3.96467 4.07089 4.20888 4.78999 4.81797 4.90869 4.96440 5.17153 5.30906 5.34003 5.39550 5.64315 5.69220 5.79019 5.88278 5.90642 6.08217 6.16655 6.37784 6.43974 6.63860 6.84010 6.97786 7.01134 7.44609 7.47926 7.90195 8.03213 8.26115 8.72860 8.97512 9.15920 9.70832 10.55454 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.005824 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.488327 B = 4806.474398 C = 5160.807879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.245 3.755 3 C 0.215 3.785 4 N -0.444 5.444 5 C -0.312 4.312 6 H 0.106 0.894 7 C 0.033 3.967 8 N -0.881 5.881 9 Si 0.930 3.070 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.469 3.531 14 O -0.555 6.555 15 C -0.074 4.074 16 H 0.101 0.899 17 C 0.123 3.877 18 N -0.746 5.746 19 C 0.196 3.804 20 C -0.189 4.189 21 C -0.080 4.080 22 C -0.178 4.178 23 C -0.035 4.035 24 C -0.133 4.133 25 H 0.126 0.874 26 H 0.085 0.915 27 H 0.274 0.726 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.410 0.590 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -6.962 -9.350 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.073 4.073 3 C 0.088 3.912 4 N -0.165 5.165 5 C -0.439 4.439 6 H 0.124 0.876 7 C -0.171 4.171 8 N -0.520 5.520 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.256 3.744 14 O -0.435 6.435 15 C -0.096 4.096 16 H 0.119 0.881 17 C -0.002 4.002 18 N -0.379 5.379 19 C 0.093 3.907 20 C -0.212 4.212 21 C -0.099 4.099 22 C -0.198 4.198 23 C -0.054 4.054 24 C -0.138 4.138 25 H 0.144 0.856 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.247 0.753 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.608 -6.933 -8.858 11.812 hybrid contribution 0.842 0.870 0.444 1.289 sum 4.449 -6.063 -8.413 11.284 Atomic orbital electron populations 1.80900 1.13559 1.10187 1.10482 1.29256 0.95330 0.91629 0.91108 1.18901 0.81836 1.00504 0.89982 1.43553 1.57073 1.03687 1.12183 1.19647 1.25793 1.00710 0.97747 0.87650 1.25318 0.94744 0.98427 0.98604 1.69752 1.18982 1.20320 1.42970 0.85926 0.79053 0.78621 0.80761 1.19721 1.20990 1.19800 1.19839 0.83700 0.82154 0.88663 1.90567 1.49028 1.62756 1.41143 1.20811 1.00975 0.92838 0.94961 0.88140 1.21964 0.94921 0.88246 0.95022 1.44657 1.49474 1.05324 1.38469 1.18327 0.92999 0.88219 0.91180 1.20180 1.06038 0.90492 1.04485 1.20664 0.96272 0.98131 0.94791 1.20764 1.01943 0.95956 1.01137 1.20339 0.97650 0.91549 0.95837 1.19360 1.01735 0.93603 0.99067 0.85629 0.89794 0.91535 0.90426 0.90897 0.75298 0.86974 0.86497 0.86471 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.01 18.54 42.16 0.78 -10.23 16 2 C 0.25 5.28 12.79 -20.76 -0.27 5.02 16 3 C 0.22 4.11 4.70 -6.83 -0.03 4.08 16 4 N -0.44 -10.11 2.57 -117.93 -0.30 -10.42 16 5 C -0.31 -7.90 9.25 -14.93 -0.14 -8.04 16 6 H 0.11 2.82 7.44 -52.48 -0.39 2.43 16 7 C 0.03 0.79 4.94 -17.47 -0.09 0.71 16 8 N -0.88 -21.98 9.42 55.50 0.52 -21.46 16 9 Si 0.93 19.52 29.59 -169.99 -5.03 14.49 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 C 0.47 10.60 6.76 -10.98 -0.07 10.53 16 14 O -0.55 -14.60 15.39 5.55 0.09 -14.51 16 15 C -0.07 -1.34 2.67 -92.28 -0.25 -1.58 16 16 H 0.10 1.79 7.56 -51.93 -0.39 1.40 16 17 C 0.12 1.74 5.62 -3.63 -0.02 1.72 16 18 N -0.75 -9.98 6.53 -58.12 -0.38 -10.36 16 19 C 0.20 3.10 7.03 -83.66 -0.59 2.51 16 20 C -0.19 -2.65 10.07 -39.19 -0.39 -3.04 16 21 C -0.08 -1.08 10.02 -39.70 -0.40 -1.48 16 22 C -0.18 -2.66 10.06 -39.56 -0.40 -3.06 16 23 C -0.03 -0.62 9.49 -39.61 -0.38 -0.99 16 24 C -0.13 -2.40 5.07 -104.26 -0.53 -2.93 16 25 H 0.13 2.44 6.65 -51.93 -0.35 2.09 16 26 H 0.08 1.22 4.21 -51.93 -0.22 1.00 16 27 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.08 1.10 6.84 -51.93 -0.36 0.75 16 29 H 0.07 0.83 7.72 -51.93 -0.40 0.43 16 30 H 0.41 4.17 8.96 -40.82 -0.37 3.80 16 31 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -31.41 291.76 -6.77 -38.18 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.30 Total: 6.47 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.55 Total: 3.43 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.62 Total: -52.46 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.51 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.41 -6.77 -38.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133981159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.120 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds