Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47163 * 36.64168 * 3 2 1 5 5 C 1.36755 * 120.00467 * 263.83478 * 4 3 2 6 6 H 1.07998 * 120.00192 * 200.39855 * 5 4 3 7 7 C 1.39086 * 119.99816 * 20.39740 * 5 4 3 8 8 N 1.31350 * 120.00017 * 21.47025 * 7 5 4 9 9 Si 1.86795 * 119.99908 * 201.46240 * 7 5 4 10 10 H 1.48499 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47083 * 120.00306 * 9 7 5 12 12 H 1.48501 * 109.47351 * 240.00156 * 9 7 5 13 13 C 1.34786 * 119.99464 * 83.83792 * 4 3 2 14 14 O 1.21785 * 119.99335 * 179.97438 * 13 4 3 15 15 C 1.41732 * 120.00250 * 359.97438 * 13 4 3 16 16 C 1.35197 * 119.99959 * 180.02562 * 15 13 4 17 17 C 1.46873 * 119.99692 * 179.72282 * 16 15 13 18 18 C 1.40058 * 120.09829 * 359.72677 * 17 16 15 19 19 C 1.37096 * 119.90179 * 179.71614 * 18 17 16 20 20 C 1.39258 * 120.09458 * 0.57659 * 19 18 17 21 21 N 1.39120 * 119.90254 * 179.69376 * 20 19 18 22 22 C 1.39254 * 120.19428 * 359.68038 * 20 19 18 23 23 C 1.37095 * 120.09724 * 0.03740 * 22 20 19 24 24 H 1.09003 * 109.46733 * 276.64322 * 3 2 1 25 25 H 1.08992 * 109.47111 * 156.64553 * 3 2 1 26 26 H 0.96996 * 119.99972 * 180.02562 * 8 7 5 27 27 H 1.08004 * 120.00047 * 359.72351 * 15 13 4 28 28 H 1.07996 * 120.00268 * 359.72263 * 16 15 13 29 29 H 1.08002 * 120.05079 * 359.97438 * 18 17 16 30 30 H 1.07992 * 119.95307 * 180.27819 * 19 18 17 31 31 H 0.96998 * 120.00080 * 179.97438 * 21 20 19 32 32 H 0.97003 * 119.99624 * 359.97438 * 21 20 19 33 33 H 1.07998 * 119.94981 * 180.02562 * 22 20 19 34 34 H 1.07994 * 120.04558 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.1074 -0.8243 5 6 3.4452 -2.2932 -0.2390 6 1 4.0971 -2.9805 -0.7578 7 6 2.9600 -2.6142 1.0243 8 7 1.8751 -2.0299 1.4791 9 14 3.8511 -3.8765 2.0740 10 1 5.0372 -4.3836 1.3383 11 1 4.2901 -3.2432 3.3436 12 1 2.9348 -5.0056 2.3751 13 6 3.2032 -0.9579 -2.1596 14 8 3.6100 -1.8789 -2.8448 15 6 2.8417 0.2709 -2.7663 16 6 2.9480 0.4206 -4.1057 17 6 2.5676 1.6920 -4.7350 18 6 2.0891 2.7487 -3.9501 19 6 1.7406 3.9357 -4.5410 20 6 1.8505 4.0875 -5.9209 21 7 1.4898 5.2916 -6.5171 22 6 2.3207 3.0377 -6.7058 23 6 2.6768 1.8492 -6.1225 24 1 2.9713 -0.1181 1.0208 25 1 2.9709 0.9442 -0.4074 26 1 1.5369 -2.2535 2.3603 27 1 2.4767 1.0862 -2.1591 28 1 3.3126 -0.3947 -4.7130 29 1 1.9987 2.6301 -2.8804 30 1 1.3759 4.7525 -3.9360 31 1 1.5661 5.3991 -7.4781 32 1 1.1620 6.0238 -5.9717 33 1 2.4047 3.1599 -7.7755 34 1 3.0418 1.0358 -6.7319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134721791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = 29.039300 kcal Electronic energy + Delta-G solvation = -19310.443585 eV Core-core repulsion = 16208.311669 eV Total energy + Delta-G solvation = -3102.131916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84325 -40.14429 -37.64034 -36.37611 -35.98793 -33.91579 -33.22979 -31.88368 -29.46452 -28.93744 -26.82835 -24.41483 -23.64076 -21.93815 -19.93221 -19.57236 -18.74219 -18.05012 -17.85972 -17.50544 -16.61262 -16.19448 -15.88573 -15.33709 -15.10296 -14.85361 -14.68088 -14.41860 -14.21599 -14.11329 -13.85900 -13.44551 -13.17899 -13.01711 -12.87917 -12.48033 -12.36440 -12.16465 -12.06320 -12.03326 -11.67206 -11.13659 -10.46388 -10.25706 -9.90230 -9.89397 -8.43067 -8.14368 -5.93977 -0.18350 0.61810 1.21466 1.47653 1.48597 1.62070 1.94511 2.24647 2.37353 2.55536 3.02320 3.05070 3.16726 3.25319 3.63004 3.90439 3.98878 4.14253 4.29262 4.41745 4.53181 4.64868 4.70911 4.84825 4.92171 5.18108 5.26413 5.34976 5.45386 5.46902 5.65015 5.91220 5.96797 6.12098 6.44978 6.60900 7.01351 7.02038 7.13148 7.35133 7.97561 8.61242 Molecular weight = 271.11amu Principal moments of inertia in cm(-1) A = 0.034178 B = 0.004066 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.032409 B = 6884.660888 C = 7492.332640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.258 3.742 3 C 0.221 3.779 4 N -0.447 5.447 5 C -0.340 4.340 6 H 0.082 0.918 7 C 0.005 3.995 8 N -0.888 5.888 9 Si 0.990 3.010 10 H -0.270 1.270 11 H -0.260 1.260 12 H -0.288 1.288 13 C 0.475 3.525 14 O -0.635 6.635 15 C -0.230 4.230 16 C -0.012 4.012 17 C -0.154 4.154 18 C -0.058 4.058 19 C -0.211 4.211 20 C 0.228 3.772 21 N -0.859 5.859 22 C -0.209 4.209 23 C -0.051 4.051 24 H 0.124 0.876 25 H 0.138 0.862 26 H 0.276 0.724 27 H 0.139 0.861 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.409 0.591 32 H 0.408 0.592 33 H 0.145 0.855 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 17.104 -10.402 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.060 4.060 3 C 0.095 3.905 4 N -0.165 5.165 5 C -0.468 4.468 6 H 0.100 0.900 7 C -0.198 4.198 8 N -0.526 5.526 9 Si 0.814 3.186 10 H -0.195 1.195 11 H -0.185 1.185 12 H -0.214 1.214 13 C 0.271 3.729 14 O -0.525 6.525 15 C -0.250 4.250 16 C -0.034 4.034 17 C -0.157 4.157 18 C -0.077 4.077 19 C -0.233 4.233 20 C 0.120 3.880 21 N -0.398 5.398 22 C -0.231 4.231 23 C -0.070 4.070 24 H 0.141 0.859 25 H 0.155 0.845 26 H 0.086 0.914 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.159 0.841 31 H 0.239 0.761 32 H 0.238 0.762 33 H 0.163 0.837 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.568 16.649 -10.498 19.691 hybrid contribution 0.391 -0.914 0.658 1.192 sum 0.959 15.735 -9.840 18.583 Atomic orbital electron populations 1.80872 1.14647 1.11618 1.11402 1.29695 0.95760 0.90044 0.90503 1.19065 0.80275 0.91342 0.99830 1.43714 1.55560 1.12255 1.04944 1.19682 1.28267 0.98152 1.00686 0.89999 1.26010 0.95011 1.00173 0.98616 1.69910 1.18334 1.44615 1.19691 0.84925 0.78100 0.77414 0.78151 1.19461 1.18459 1.21406 1.17612 0.83605 0.89667 0.82024 1.90611 1.53626 1.45527 1.62686 1.21964 1.08760 0.97470 0.96837 1.22275 0.91616 0.95277 0.94191 1.18838 1.08592 0.93899 0.94338 1.21215 0.94280 0.92115 1.00050 1.20620 1.09965 0.99327 0.93420 1.18084 0.90754 0.87194 0.91982 1.42405 1.73383 1.12677 1.11289 1.20631 1.08701 0.93252 1.00561 1.21191 0.95153 0.97589 0.93090 0.85861 0.84501 0.91369 0.84319 0.86770 0.85401 0.84116 0.76103 0.76194 0.83704 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.43 18.54 20.01 0.37 -24.06 16 2 C 0.26 11.53 13.13 89.44 1.17 12.70 16 3 C 0.22 8.83 4.79 84.57 0.40 9.23 16 4 N -0.45 -21.99 2.59 -655.41 -1.70 -23.69 16 5 C -0.34 -18.41 9.26 84.13 0.78 -17.63 16 6 H 0.08 4.79 7.42 -2.91 -0.02 4.77 16 7 C 0.00 0.24 4.83 84.97 0.41 0.65 16 8 N -0.89 -45.33 9.59 21.69 0.21 -45.12 16 9 Si 0.99 40.65 29.60 68.60 2.03 42.68 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 12 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.48 23.50 7.34 85.10 0.62 24.12 16 14 O -0.63 -36.48 15.78 -4.62 -0.07 -36.56 16 15 C -0.23 -8.87 8.30 22.43 0.19 -8.69 16 16 C -0.01 -0.43 9.41 23.83 0.22 -0.21 16 17 C -0.15 -4.37 5.87 -20.13 -0.12 -4.49 16 18 C -0.06 -1.46 9.38 22.44 0.21 -1.25 16 19 C -0.21 -4.26 9.85 22.25 0.22 -4.04 16 20 C 0.23 4.04 6.76 38.48 0.26 4.30 16 21 N -0.86 -8.61 9.06 -51.29 -0.46 -9.07 16 22 C -0.21 -3.92 9.85 22.25 0.22 -3.71 16 23 C -0.05 -1.21 9.76 22.44 0.22 -0.99 16 24 H 0.12 4.93 6.63 -2.39 -0.02 4.91 16 25 H 0.14 4.01 6.45 -2.39 -0.02 3.99 16 26 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 27 H 0.14 4.50 4.08 -2.91 -0.01 4.49 16 28 H 0.11 4.27 7.45 -2.91 -0.02 4.25 16 29 H 0.13 3.08 6.16 -2.91 -0.02 3.06 16 30 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.41 2.46 8.83 -92.71 -0.82 1.65 16 32 H 0.41 2.71 8.83 -92.71 -0.82 1.89 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -72.99 303.33 4.73 -68.26 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.46 Total: 17.55 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.81 Total: 10.00 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -1.58 Total: -101.95 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.07 Total: -36.56 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -72.99 4.73 -68.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134721791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.304 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds